Clone LD21347 Report

Search the DGRC for LD21347

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:213
Well:47
Vector:pOT2
Associated Gene/Transcriptbeag-RA
Protein status:LD21347.pep: gold
Preliminary Size:2200
Sequenced Size:1878

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18005 2001-01-01 Release 2 assignment
CG18005 2001-11-29 Blastp of sequenced clone
CG18005 2003-01-01 Sim4 clustering to Release 3
CG18005 2008-04-29 Release 5.5 accounting
CG18005 2008-08-15 Release 5.9 accounting
CG18005 2008-12-18 5.12 accounting

Clone Sequence Records

LD21347.complete Sequence

1878 bp (1878 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069471

> LD21347.complete
TGTAAATATAGATTTTCTCTGCGAGTTTTCTTCGAATTTTCTTCGCCATG
TCGGATGCCCACTTGGAAGCACCGCCTTCGGTGCGACTAACCAACGATGA
CTTCCGCAAGCTGCTAGCGACGCCCCGAGCTCCTCCTCCTGGCTCCGGGA
CGAGCAGCACCTCCGCTGGAGGATCTCTGGCCACTGCTACCTTTGCCACG
CCCTCCACCGCCCCCGGCACGACAGGATTGAGTGGCGAAAAGAAGAAGGG
TCAGAGCAGCAGCGAGCGGAATGATCTGCGTCGCAAGAAAAAGAACTTCT
ATGCGGCGCTCAAGAAGCAGGAGGATGTGAAGCTGCAAGAGCTGTCCGAG
AAGTACAGGGACCGAGCACGAGAACGACGCGATGGTGCCAATCCAGATTA
CGTGAACGTGAGCACGCCGGGACACGGAAGCAGCACCAATGCGTATCGAG
CTGTAGCGCCAGATATGAAATCCGGAATCGATGCCCAGGAGCGAAGAAGA
CGTATCATTCAGGAGTCCAAGTTCTTGGGTGGAGACATCCAGCATACGCA
TTTGGTGAAGGGTCTTGATTACGCCCTTCTGCAAAAAGTGCGCTCCGAGC
TGCACTCGAAGGAAGCGGAAGAGGAGGAGATTGCCGCCGCTGTGGCAAGG
GAAAAGCTCGCCGAAGCAGCTGCCGCCGCTGAGCAATTGGAAGCGGAACG
CCGCGAGTCGGAGGATATTAATGCAATCAATGGTGCACTAGCGCGCAATA
TTTACAATCTAGTGCAGGCAAGGCGTTCGAAAGAAGTTCCCCGCAATGAG
CTATTTGCTCCAGGACGGATGGCCTATGTGATCGACCTGGATGACGAGCT
AGGGGAGTCGGATATTCCAACCACACTGAAGCGCTCCAAGTTCGAGGTGC
CGGTGTCACAAGAGGATGTTGCCACGCTGACCACCAATGACATTGTGATC
AACAAGCTGTCCCAAATCCTGAGCTATCTACGTGCCGGTGGTCGCAACAA
GAAGAACAAAAAGCGCGACAAGGACAAACCGCTGTTCTACGAAAAGGAGG
TGGAAAATCTTCGTGGGTCGTCTAGCAATGGTGGCTCCAGTCGGCACGCC
ACCTCGTCCTCATCGAACATGGGAGGGAAATCAGCTCCCTTGGGCGATAA
TATCTACGACGATATAGGGGACTACCAACCTTCTGCCACGCGACCTGAGC
GAAACCGCCAGGAGCAAGGCAAGTCCGCCCCGTCCTACTTTGGAGACGGC
CCGCCGGAGGCATCAGAGGAGCCGATAATATCCAGTATTCCCCCGCCACC
CAAGATATCGAAGGCCATGGCCGCACGGTTCGCTGAACCCGAGGGATACG
CAGAATGCTATCCCGGGCTGGAGGAGATGAACGACGCCATCGACGACTCG
GACGATGAGGTGGATTACACCAAGATGGATTTGGGCAATAAAAAGGGGCC
CATTGGACGCTGGGACTTTGACACGCAGGAGGAGTACTCCGACTACATGA
GCACGAAGGAGGCGCTGCCCAAGGCAGCCTTCCAGTACGGGGTCAAGATG
CAGGACGGTCGCAAGACGCGCAAGAACAAGACGGAGAAGAACGAGAAGGC
CGAGCTCGATAGGGAGTGGCAAAAGATTCAGACAATCATTCAAAAGCGAA
AACTGCCAAAGGACGGTGGAGGCGGCGGTGCTGGTGGCGATGAACCCGAT
TACAAATCCGCAAAGTACTAGAAATTCTTGAAACATTATTCTATATTTGT
AATGTAATTCTGTAAAACATTAAATATAAGTATGCTCGTACTTGTATTAA
TCTTACATGCTCTCAAATATATTTTAGCAACGTTATCACTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD21347.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18005-RA 1977 CG18005-RA 116..1957 1..1842 9210 100 Plus
CG11033-RB 5331 CG11033-RB 5188..5331 1842..1699 720 100 Minus
CG11033.a 5190 CG11033.a 5075..5190 1842..1727 580 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4889305..4890935 1631..1 8095 99.8 Minus
chr3R 27901430 chr3R 4889031..4889245 1840..1626 1060 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9063406..9065036 1631..1 8155 100 Minus
3R 32079331 3R 9063130..9063346 1842..1626 1070 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8804237..8805867 1631..1 8155 100 Minus
3R 31820162 3R 8803961..8804177 1842..1626 1070 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 16:29:27 has no hits.

LD21347.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:32 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4889031..4889239 1632..1840 100 <- Minus
chr3R 4889305..4890935 1..1631 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:54 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
CG18005-RA 1..1674 48..1721 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:59 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
CG18005-RA 1..1674 48..1721 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:14:05 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
beag-RA 1..1674 48..1721 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:13 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
CG18005-RA 1..1674 48..1721 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:30:24 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
beag-RA 1..1674 48..1721 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:37 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
CG18005-RA 62..1901 1..1840 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:59 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
CG18005-RA 62..1901 1..1840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:14:05 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
beag-RA 43..1882 1..1840 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:13 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
CG18005-RA 62..1901 1..1840 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:30:24 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
beag-RA 43..1882 1..1840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:32 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9063132..9063340 1632..1840 100 <- Minus
3R 9063406..9065036 1..1631 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:32 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9063132..9063340 1632..1840 100 <- Minus
3R 9063406..9065036 1..1631 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:32 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9063132..9063340 1632..1840 100 <- Minus
3R 9063406..9065036 1..1631 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:14:05 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4888854..4889062 1632..1840 100 <- Minus
arm_3R 4889128..4890758 1..1631 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:35 Download gff for LD21347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8803963..8804171 1632..1840 100 <- Minus
3R 8804237..8805867 1..1631 100   Minus

LD21347.pep Sequence

Translation from 47 to 1720

> LD21347.pep
MSDAHLEAPPSVRLTNDDFRKLLATPRAPPPGSGTSSTSAGGSLATATFA
TPSTAPGTTGLSGEKKKGQSSSERNDLRRKKKNFYAALKKQEDVKLQELS
EKYRDRARERRDGANPDYVNVSTPGHGSSTNAYRAVAPDMKSGIDAQERR
RRIIQESKFLGGDIQHTHLVKGLDYALLQKVRSELHSKEAEEEEIAAAVA
REKLAEAAAAAEQLEAERRESEDINAINGALARNIYNLVQARRSKEVPRN
ELFAPGRMAYVIDLDDELGESDIPTTLKRSKFEVPVSQEDVATLTTNDIV
INKLSQILSYLRAGGRNKKNKKRDKDKPLFYEKEVENLRGSSSNGGSSRH
ATSSSSNMGGKSAPLGDNIYDDIGDYQPSATRPERNRQEQGKSAPSYFGD
GPPEASEEPIISSIPPPPKISKAMAARFAEPEGYAECYPGLEEMNDAIDD
SDDEVDYTKMDLGNKKGPIGRWDFDTQEEYSDYMSTKEALPKAAFQYGVK
MQDGRKTRKNKTEKNEKAELDREWQKIQTIIQKRKLPKDGGGGGAGGDEP
DYKSAKY*

LD21347.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18429-PA 555 GF18429-PA 1..555 1..557 2185 89.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17395-PA 558 GG17395-PA 1..558 1..557 2873 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18236-PA 584 GH18236-PA 1..584 1..557 1976 78.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
beag-PA 557 CG18005-PA 1..557 1..557 2864 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10192-PA 541 GI10192-PA 1..541 1..557 2063 82.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21550-PA 558 GL21550-PA 1..558 1..557 2111 83.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14763-PA 558 GA14763-PA 1..558 1..557 2103 83.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26285-PA 557 GM26285-PA 1..557 1..557 2889 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20821-PA 557 GD20821-PA 1..557 1..557 2884 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23479-PA 299 GJ23479-PA 1..294 1..303 1114 82.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11519-PA 560 GK11519-PA 1..560 1..557 2141 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24799-PA 554 GE24799-PA 1..554 1..557 2853 97.8 Plus

LD21347.hyp Sequence

Translation from 47 to 1720

> LD21347.hyp
MSDAHLEAPPSVRLTNDDFRKLLATPRAPPPGSGTSSTSAGGSLATATFA
TPSTAPGTTGLSGEKKKGQSSSERNDLRRKKKNFYAALKKQEDVKLQELS
EKYRDRARERRDGANPDYVNVSTPGHGSSTNAYRAVAPDMKSGIDAQERR
RRIIQESKFLGGDIQHTHLVKGLDYALLQKVRSELHSKEAEEEEIAAAVA
REKLAEAAAAAEQLEAERRESEDINAINGALARNIYNLVQARRSKEVPRN
ELFAPGRMAYVIDLDDELGESDIPTTLKRSKFEVPVSQEDVATLTTNDIV
INKLSQILSYLRAGGRNKKNKKRDKDKPLFYEKEVENLRGSSSNGGSSRH
ATSSSSNMGGKSAPLGDNIYDDIGDYQPSATRPERNRQEQGKSAPSYFGD
GPPEASEEPIISSIPPPPKISKAMAARFAEPEGYAECYPGLEEMNDAIDD
SDDEVDYTKMDLGNKKGPIGRWDFDTQEEYSDYMSTKEALPKAAFQYGVK
MQDGRKTRKNKTEKNEKAELDREWQKIQTIIQKRKLPKDGGGGGAGGDEP
DYKSAKY*

LD21347.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
beag-PA 557 CG18005-PA 1..557 1..557 2864 100 Plus