Clone LD21403 Report

Search the DGRC for LD21403

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:214
Well:3
Vector:pOT2
Associated Gene/TranscriptCG8920-RA
Protein status:LD21403.pep: gold
Preliminary Size:4716
Sequenced Size:3089

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8920 2000-02-14 Blastp of sequenced clone
CG8920 2001-01-01 Release 2 assignment
CG8920 2008-04-29 Release 5.5 accounting
CG8920 2008-08-15 Release 5.9 accounting
CG8920 2008-12-18 5.12 accounting

Clone Sequence Records

LD21403.complete Sequence

3089 bp (3089 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132168

> LD21403.complete
TGAGCCGCTGCTGCTGCGCTGCTACCTTACCGCTTCACTCTGTGTGACCG
ACCGCTCGACGGACCGTTCCCGCCCGCTCTCTCCGTCGAAAAGGGGCCGC
CCGCCGCTGAAGGGGCAACGTGTCAACGGCGTCTTCTTCTTTTCATCTGC
GCCGTGAAAAGTGTGTTCATCACAGCGAAGTATAACGCTAACACAGAACA
TATTGTGCGTATGGTACGTCAGCAGAAGACCAGCAAGTCCACAAGCTTAT
CGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAGAAGCAC
ACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCCGAATCA
TCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATCAGGCTA
TAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAGCTGTTT
GAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCAGGTTTT
CAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTAAGAAAG
AAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGGGAAAAA
CAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGATCTTCGT
AACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGACCAAGGC
ACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAACCTCCG
CTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGATACAAG
CACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTCATCCGC
GAGTAATGTACCCTGGTCACCAGCGCACCACGGGCGTCTCTGTGAATCAC
AGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCCAGCGGTAGCGCC
CATCACGCCGCCAGCTTCGCCGGAATACGCTCAAACGACAACCGCCGCTA
AAGCGACGTACAAAGAAGATATCCACGGAGGTCAAGGTGAAACAGGCAAT
GTCGTTACAAATCCAAAAGTTAAGGTGCCACTTAAATTCGATCCCTCACT
TGATCCCGTCTCCACGCTCAACTTCTATTGCGCGGCAAATGACTTTGAGA
AACCTGCATACAACATATTCAACAAGCTACGGAACCTACATTGTTCAGTG
CAAATCGCTGGCGATGTTTACAGTAGCTATCCGCAGGAGTTCACCGATAA
GGAGACAGCATACCAACGCACAGCACAGATCGCCATCCAGCGCATCATGC
ATGCCCAGTCACACCAAAAGCTTTCTGCTTGCACATTTAGCGATGTGGAG
TTTATCGATGGATTGTACAAGGAGCTGTTAAAGCACCCACATGGCATATT
GGGTCACAAGCTGGAGGATTGGTACGGCAGCACCTTCCGGCAACATCTGC
CCAGTCATTGGTACGATTTGATCGTGAAGTCAAATAAAATTCGTGTTGAG
CACGGCATTGATCCAAGGATCATATTGTTTGCCAACGATCCTGGTTCATC
GGAGCCGGACCGCACCAGCATAACCACCCTGCCACAGATGGTGCTGCCGT
GGCAGTCAAGCGAAGGAGGATCGCACGACTGGAACATGTTCATCAGCTTC
TGCGACTCCACCAAGATAGTGTGGGCTCGGATGATCGATCAGATCGCAAA
CTTTGAGGAACTGACGAAGCATATTGGACGCCAAATGGAGTCTCCGCATT
TCCGACAAAAGGTCTCTAAACCTTACGCTCAGGAAGTCTATTTAGTGGAG
ATGCCCGATGGCTGGAATCGTGTTCGTGCAATTTCTGTGGATGAGGAGAC
CCGCTCGGGCCGTTATCACTTTATCGACTTTGGCGATGTGGCAATGTTTC
ATTCAGAAGATCTCTTCCACTGTCCACCGCAGTTCTTGGCGCTCCCGGCC
CAGGCCGTGTGCCTCAGCATGTATGCGTTGGATAAGTTCGAGGATCATCC
GCACGCTCTGCAGGTTTTAACAAAGGAGCTGGACGGCCAGACGGTTGTGG
CCCATGTGCTCACCACGGAGAAGCAGTTCCTGGAACTGGGTGGATCTGCC
CAGGGTGTGGTGGAGAACGGTAAGCGTCGGGCGTGCTTGGTGGCCACGCT
GTACGACACCTCAACGGCTGAGGACATTCATCTGAACGATCTGGTTGCGA
AAAGAATAACGAAGTGCACGCCGGCACCATCGCTGAGTGATGAAAAGAAG
ATCGGCAAGACCACGCCCATTCTTGTGTCTCACATCAACGATGATGGTGA
TCTAATGGTGCTGCTACGCAATGATGACCTTAAGTTTGTGGAGCGCAGTA
TTGCGCAAACTGTGGCTGATTTGGGCGAGCAGGACCGAGTGAGCTATTCG
GATCTGCTCCACGACCGCCATATATTCGTGTGCGACGAGACTGTCGATGG
CGTCAAGCAGTGGTTCCGCGGGCGACTGGTCACCAGACCACTGAATCCGG
ACGAAGAGTCCTTCGATGTCTACTACGTGGACGATGGACGGCAGCGTAAG
GCGCACATCTCTAATATCTACCGCCTGGAGGCAAACAACAGAGCTCTGGC
TACGTTCCCGCCACAGGCGATACCCGTTCGCCTGCACGACGTTCCAGAGA
TCGGAGGTCATATGCTTCATCGCCTGCGTGGTCTGATACCTTGGCGCACC
GAAGCTCTCCTGAAGGTTGTGGCCATGGATGGTGGTAAGCCTCTGGTAAA
CGTATTCATCCGCGAGGATCCGGAGTCCATGTATATGTGCGTGAACATTG
GCCTTCGCCTGGAGCTCGAGATGGCTAGCTCCCTAAACAACGACATCTGA
ATTGTGACTGGTGCCCTATAAGTTTATATTAACAATATAATTGATCCTTT
GCTTAATGCTATCTCTATAAGTGCTTCAATAAACCGGAACTGACTTGATA
TGTTATTGCTAACACAAATTCGATCTACGTTTTGTAAGCTTACCCTAAAA
TCATGCACATCTTTGTATATAATCTGAAAAATATACTCTTAAGCTGCAAT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD21403.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-RA 3206 CG8920-RA 31..3077 1..3047 15235 100 Plus
CG8920.b 2955 CG8920.b 1..2954 92..3047 14725 99.9 Plus
CG8920.c 3148 CG8920.c 138..3023 162..3047 14430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16208691..16211237 163..2709 12570 99.6 Plus
chr2R 21145070 chr2R 16211509..16211729 2827..3047 1075 99.1 Plus
chr2R 21145070 chr2R 16207551..16207714 1..164 820 100 Plus
chr2R 21145070 chr2R 16211306..16211424 2710..2828 580 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20321678..20324224 163..2709 12735 100 Plus
2R 25286936 2R 20324496..20324716 2827..3047 1105 100 Plus
2R 25286936 2R 20320527..20320690 1..164 820 100 Plus
2R 25286936 2R 20324293..20324411 2710..2828 595 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20322877..20325423 163..2709 12735 100 Plus
2R 25260384 2R 20325695..20325915 2827..3047 1105 100 Plus
2R 25260384 2R 20321726..20321889 1..164 820 100 Plus
2R 25260384 2R 20325492..20325610 2710..2828 595 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:36:19 has no hits.

LD21403.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:37:20 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16207551..16207712 1..162 100 -> Plus
chr2R 16208691..16211237 163..2709 99 -> Plus
chr2R 16211306..16211424 2710..2828 99 -> Plus
chr2R 16211511..16211731 2829..3051 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:59 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RC 203..2880 154..2832 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:48 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RE 203..2898 154..2850 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:54 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RD 203..2898 154..2850 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:11:43 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RC 203..2880 154..2832 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:45:30 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RD 203..2898 154..2850 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:38:53 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 31..3079 1..3051 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:47 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 31..3078 1..3048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:54 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 32..3079 1..3048 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:11:43 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 31..3079 1..3051 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:45:30 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 32..3079 1..3048 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:20 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20320527..20320688 1..162 100 -> Plus
2R 20321678..20324224 163..2709 100 -> Plus
2R 20324293..20324411 2710..2828 100 -> Plus
2R 20324498..20324718 2829..3051 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:20 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20320527..20320688 1..162 100 -> Plus
2R 20321678..20324224 163..2709 100 -> Plus
2R 20324293..20324411 2710..2828 100 -> Plus
2R 20324498..20324718 2829..3051 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:20 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20320527..20320688 1..162 100 -> Plus
2R 20321678..20324224 163..2709 100 -> Plus
2R 20324293..20324411 2710..2828 100 -> Plus
2R 20324498..20324718 2829..3051 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:54 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16208032..16208193 1..162 100 -> Plus
arm_2R 16209183..16211729 163..2709 100 -> Plus
arm_2R 16211798..16211916 2710..2828 100 -> Plus
arm_2R 16212003..16212223 2829..3051 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:48:08 Download gff for LD21403.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20325697..20325917 2829..3051 98   Plus
2R 20322877..20325423 163..2709 100 -> Plus
2R 20325492..20325610 2710..2828 100 -> Plus
2R 20321726..20321887 1..162 100 -> Plus

LD21403.pep Sequence

Translation from 210 to 2849

> LD21403.pep
MVRQQKTSKSTSLSKPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNHQPD
QEIGRAAKCENQAIAEHKQDLTGIITQELFESFNNIQGPFSENLQVFNKN
PEYITRRKKELKKEDDLDRGQITKEVAREKQKEKETRDRAVTETIFVTIE
NKKAPVMNGHGPRHVKVANGQDKHNDGKPPLRAILGNSASQRQQDTSTVY
HSPESSFKRPRHPRVMYPGHQRTTGVSVNHRLKVTPQSDAPTPAVAPITP
PASPEYAQTTTAAKATYKEDIHGGQGETGNVVTNPKVKVPLKFDPSLDPV
STLNFYCAANDFEKPAYNIFNKLRNLHCSVQIAGDVYSSYPQEFTDKETA
YQRTAQIAIQRIMHAQSHQKLSACTFSDVEFIDGLYKELLKHPHGILGHK
LEDWYGSTFRQHLPSHWYDLIVKSNKIRVEHGIDPRIILFANDPGSSEPD
RTSITTLPQMVLPWQSSEGGSHDWNMFISFCDSTKIVWARMIDQIANFEE
LTKHIGRQMESPHFRQKVSKPYAQEVYLVEMPDGWNRVRAISVDEETRSG
RYHFIDFGDVAMFHSEDLFHCPPQFLALPAQAVCLSMYALDKFEDHPHAL
QVLTKELDGQTVVAHVLTTEKQFLELGGSAQGVVENGKRRACLVATLYDT
STAEDIHLNDLVAKRITKCTPAPSLSDEKKIGKTTPILVSHINDDGDLMV
LLRNDDLKFVERSIAQTVADLGEQDRVSYSDLLHDRHIFVCDETVDGVKQ
WFRGRLVTRPLNPDEESFDVYYVDDGRQRKAHISNIYRLEANNRALATFP
PQAIPVRLHDVPEIGGHMLHRLRGLIPWRTEALLKVVAMDGGKPLVNVFI
REDPESMYMCVNIGLRLELEMASSLNNDI*

LD21403.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12261-PA 1266 GF12261-PA 259..1007 116..879 2439 61.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22026-PA 1040 GG22026-PA 192..1040 39..879 3629 81.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21825-PA 1006 GH21825-PA 283..1004 178..871 1661 48 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
tapas-PD 965 CG8920-PD 87..965 1..879 4654 100 Plus
tapas-PA 879 CG8920-PA 1..879 1..879 4654 100 Plus
tapas-PF 1136 CG8920-PF 1..876 1..876 4631 99.8 Plus
tapas-PB 1222 CG8920-PB 87..962 1..876 4631 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20795-PA 1055 GI20795-PA 331..1053 178..871 1692 47.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17657-PA 1304 GL17657-PA 336..1038 157..871 1918 52.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24863-PA 1302 GA24863-PA 334..1036 157..871 1941 52.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22008-PA 714 GM22008-PA 87..699 1..597 2482 76.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15443-PA 558 GD15443-PA 6..558 323..879 2806 92.6 Plus
Dsim\GD15442-PA 163 GD15442-PA 1..146 1..141 222 41.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20530-PA 1865 GJ20530-PA 885..1604 178..874 1649 47.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17950-PA 1758 GK17950-PA 886..1489 285..878 1793 56.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12104-PA 974 GE12104-PA 88..974 1..879 3642 78.8 Plus

LD21403.hyp Sequence

Translation from 210 to 2849

> LD21403.hyp
MVRQQKTSKSTSLSKPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNHQPD
QEIGRAAKCENQAIAEHKQDLTGIITQELFESFNNIQGPFSENLQVFNKN
PEYITRRKKELKKEDDLDRGQITKEVAREKQKEKETRDRAVTETIFVTIE
NKKAPVMNGHGPRHVKVANGQDKHNDGKPPLRAILGNSASQRQQDTSTVY
HSPESSFKRPRHPRVMYPGHQRTTGVSVNHRLKVTPQSDAPTPAVAPITP
PASPEYAQTTTAAKATYKEDIHGGQGETGNVVTNPKVKVPLKFDPSLDPV
STLNFYCAANDFEKPAYNIFNKLRNLHCSVQIAGDVYSSYPQEFTDKETA
YQRTAQIAIQRIMHAQSHQKLSACTFSDVEFIDGLYKELLKHPHGILGHK
LEDWYGSTFRQHLPSHWYDLIVKSNKIRVEHGIDPRIILFANDPGSSEPD
RTSITTLPQMVLPWQSSEGGSHDWNMFISFCDSTKIVWARMIDQIANFEE
LTKHIGRQMESPHFRQKVSKPYAQEVYLVEMPDGWNRVRAISVDEETRSG
RYHFIDFGDVAMFHSEDLFHCPPQFLALPAQAVCLSMYALDKFEDHPHAL
QVLTKELDGQTVVAHVLTTEKQFLELGGSAQGVVENGKRRACLVATLYDT
STAEDIHLNDLVAKRITKCTPAPSLSDEKKIGKTTPILVSHINDDGDLMV
LLRNDDLKFVERSIAQTVADLGEQDRVSYSDLLHDRHIFVCDETVDGVKQ
WFRGRLVTRPLNPDEESFDVYYVDDGRQRKAHISNIYRLEANNRALATFP
PQAIPVRLHDVPEIGGHMLHRLRGLIPWRTEALLKVVAMDGGKPLVNVFI
REDPESMYMCVNIGLRLELEMASSLNNDI*

LD21403.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-PD 965 CG8920-PD 87..965 1..879 4654 100 Plus
CG8920-PA 879 CG8920-PA 1..879 1..879 4654 100 Plus
CG8920-PF 1136 CG8920-PF 1..876 1..876 4631 99.8 Plus
CG8920-PB 1222 CG8920-PB 87..962 1..876 4631 99.8 Plus