BDGP Sequence Production Resources |
Search the DGRC for LD21404
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 214 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | mRpL16-RA |
Protein status: | LD21404.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 848 |
Gene | Date | Evidence |
---|---|---|
CG3109 | 2001-01-01 | Release 2 assignment |
CG3109 | 2001-09-19 | Blastp of sequenced clone |
CG3109 | 2003-01-01 | Sim4 clustering to Release 3 |
mRpL16 | 2008-04-29 | Release 5.5 accounting |
mRpL16 | 2008-08-15 | Release 5.9 accounting |
mRpL16 | 2008-12-18 | 5.12 accounting |
848 bp (848 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058507
> LD21404.complete CACAATACAATTTTATAAATAAGTAATATATTTTGACATAAACTCACCAT GCTCTCATTAAAGTTAGTCTCCCAGCTCTTTAAGCAAAGCCTTGCGTCGG GCAACATGGCAATTGTCAACACAGCCGGTCTTAAGTATTTCGCTCCGCCT ATTAAATACCAGAATGTGGAGCAGCCGGAGAGACCCAAGCTGAGGGTCAT TGAGCGCCAGCCCCAGCTGCCGCCAAACATCCGTCCGCCAAAGATGCAGA AGCGCCTGCGATACATGCGCGGTCCGGAGATGGTGCACAACACGCTGCTC CATAAGCAGTACGCAATCGTGGCCACTGGCGGAGGGCGCCTGCGCTGGGG CCACTACGAAATGATGCGTTTGACCATCGGACGCAAGATGAACGTCAACA CTATGTTCGCCACATGGCGCGTTCCCGCACCCTGGCAGCCGATCACTAAG AAGGGCCAGGGCCAACGGATGGGCGGCGGAAAGGGAGCCATCGACCACTA CGTGACCCCCATCAAGGCCGGTCGCGTCATTGTCGAGATAGCCGGCAAGT GCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAGCAGGTGGCCAACCAGCTG CCCTTCCAGGCCACCGTCGTTTCCCAGGAGATGCTCGACGAACAGCGCGT CGCCGAGGAGGAACAGACCCGCCAGAATGAGAACCCCTTTACCATGAAGT ACGTGATCCAGAACAACCTCAGCGGCTGCCACCGTTGGCTCTCGCCCGTG GACCACAAGTGGTTCGGCAAGCACCTGTAGATGTATAGCTTCAATTAATA AAGCCATCCTTCGTTAATCTGTTACGAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL16-RA | 1008 | mRpL16-RA | 68..896 | 1..829 | 4145 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 1784456..1785118 | 164..826 | 3315 | 100 | Plus |
chrX | 22417052 | chrX | 1784142..1784238 | 1..97 | 485 | 100 | Plus |
chrX | 22417052 | chrX | 1784321..1784386 | 98..163 | 330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 129..167 | 44..6 | 114 | 76.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1784142..1784238 | 1..97 | 100 | -> | Plus |
chrX | 1784321..1784386 | 98..163 | 100 | -> | Plus |
chrX | 1784456..1785118 | 164..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 1..732 | 49..780 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 1..732 | 49..780 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 1..732 | 49..780 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 1..732 | 49..780 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 1..732 | 49..780 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 1..826 | 1..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 1..826 | 1..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 44..869 | 1..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 1..826 | 1..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL16-RA | 44..869 | 1..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1890299..1890395 | 1..97 | 100 | -> | Plus |
X | 1890478..1890543 | 98..163 | 100 | -> | Plus |
X | 1890613..1891275 | 164..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1890299..1890395 | 1..97 | 100 | -> | Plus |
X | 1890478..1890543 | 98..163 | 100 | -> | Plus |
X | 1890613..1891275 | 164..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1890299..1890395 | 1..97 | 100 | -> | Plus |
X | 1890478..1890543 | 98..163 | 100 | -> | Plus |
X | 1890613..1891275 | 164..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1784332..1784428 | 1..97 | 100 | -> | Plus |
arm_X | 1784511..1784576 | 98..163 | 100 | -> | Plus |
arm_X | 1784646..1785308 | 164..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1898397..1898493 | 1..97 | 100 | -> | Plus |
X | 1898576..1898641 | 98..163 | 100 | -> | Plus |
X | 1898711..1899373 | 164..826 | 100 | Plus |
Translation from 48 to 779
> LD21404.pep MLSLKLVSQLFKQSLASGNMAIVNTAGLKYFAPPIKYQNVEQPERPKLRV IERQPQLPPNIRPPKMQKRLRYMRGPEMVHNTLLHKQYAIVATGGGRLRW GHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMGGGKGAIDH YVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQR VAEEEQTRQNENPFTMKYVIQNNLSGCHRWLSPVDHKWFGKHL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19450-PA | 243 | GF19450-PA | 1..242 | 1..242 | 1204 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12889-PA | 243 | GG12889-PA | 1..243 | 1..243 | 1247 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17672-PA | 243 | GH17672-PA | 1..243 | 1..243 | 1117 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL16-PB | 243 | CG3109-PB | 1..243 | 1..243 | 1292 | 100 | Plus |
mRpL16-PA | 243 | CG3109-PA | 1..243 | 1..243 | 1292 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21490-PA | 197 | GI21490-PA | 1..186 | 1..186 | 825 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18214-PA | 140 | GL18214-PA | 1..138 | 1..138 | 621 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16000-PA | 243 | GA16000-PA | 1..243 | 1..243 | 1156 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19177-PA | 243 | GM19177-PA | 1..243 | 1..243 | 1279 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16576-PA | 178 | GD16576-PA | 1..178 | 66..243 | 958 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19031-PA | 243 | GJ19031-PA | 1..243 | 1..243 | 1108 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16222-PA | 243 | GK16222-PA | 1..243 | 1..243 | 1135 | 83.1 | Plus |
Translation from 48 to 779
> LD21404.hyp MLSLKLVSQLFKQSLASGNMAIVNTAGLKYFAPPIKYQNVEQPERPKLRV IERQPQLPPNIRPPKMQKRLRYMRGPEMVHNTLLHKQYAIVATGGGRLRW GHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMGGGKGAIDH YVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQR VAEEEQTRQNENPFTMKYVIQNNLSGCHRWLSPVDHKWFGKHL*