Clone LD21426 Report

Search the DGRC for LD21426

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:214
Well:26
Vector:pOT2
Associated Gene/TranscriptCbs-RA
Protein status:LD21426.pep: gold
Preliminary Size:2200
Sequenced Size:1780

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1753 2001-01-01 Release 2 assignment
CG1753 2001-09-19 Blastp of sequenced clone
CG1753 2003-01-01 Sim4 clustering to Release 3
CG1753 2008-04-29 Release 5.5 accounting
CG1753 2008-08-15 Release 5.9 accounting
CG1753 2008-12-18 5.12 accounting

Clone Sequence Records

LD21426.complete Sequence

1780 bp (1780 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058508

> LD21426.complete
TAGCGGTCGCTTTTCGCAGTTCGCGCTAGTTAGTCGCTCCTGGGTCACTA
ATCACCAGCACTGAGATGCCACAACCGAAGCCATACGAGAGGCCCGCGGA
CTTCATCGATCCCGGCAAGCCGTCCAAGTGCAAATGGCATCTGGGTACAG
CCGAGAAGTCGCCCCACATCCATCGGGGCATCGCCCACCGCCAGCAGATT
ACGCCCAACATCCTCGAGGTGATCGGATGCACGCCACTGGTCAAGTTGAA
CAACATTCCCGCCAGCGACGGCATCGAATGCGAGATGTATGCCAAGTGCG
AGTTCCTTAATCCGGGTGGATCAGTGAAGGACCGCATTGGGTACCGCATG
GTGCAGGACGCCGAGGAGCAGGGCCTGCTCAAGCCAGGCTACACCATCAT
CGAACCAACGTCTGGAAACACGGGCATTGGACTGGCAATGGCCTGTGCCG
TTAAGGGATACAAGTGCATTATCGTGATGCCGGAGAAGATGTCCAACGAG
AAGGTGTCCGCGCTGCGAACCCTCGGGGCCAAGATCATACGTACTCCAAC
GGAGGCAGCCTACGATTCGCCGGAGGGACTGATCTACGTTGCTCAGCAGC
TGCAGCGGGAAACGCCCAACTCGATTGTCTTGGATCAGTATCGCAACGCT
GGCAATCCGCTGGCTCACTACGATGGCACTGCCGCCGAGATTCTGTGGCA
GCTGGACAACAAGGTCGATATGATAGTGGTCTCGGCGGGAACGGCGGGAA
CTATCAGTGGTATTGGGCGTAAGATCAAGGAGCAGGTTCCCAGTTGCCAG
ATAGTCGGCGTGGATCCCTATGGCTCGATCCTTGCCCGCCCTGCTGAGCT
CAACAAGACCGATGTGCAATTCTACGAGGTGGAGGGCATCGGCTACGACT
TTCCGCCCACCGTATTCGATGACACCGTCGTGGATGTGTGGACGAAAATC
GGCGACTCAGACTGTTTCCCCATGAGCAGACGCCTGAACGCGGAGGAGGG
TCTGTTGTGCGGCGGGTCCAGTGGCGGAGCGATGCACGCTGCCCTCGAGC
ATGCCCGCAAATTGAAGAAAGGCCAGCGGTGCGTGGTCATTCTGCCCGAT
GGCATACGCAACTACATGACCAAGTTCGTGTCGGACAACTGGATGGAGGC
GCGCAACTTCAAGGAGCCGGTAAACGAGCACGGTCACTGGTGGTGGAGCC
TGGCCATCGCGGAGTTGGAGCTACCCGCTCCCCCGGTCATTCTCAAGTCG
GATGCAACTGTTGGTGAGGCTATTGCCCTGATGAAGAAACACCGCGTGGA
CCAGCTGCCCGTCGTGGATCAGGATGATGGTTCTGTCCTGGGCGTCGTGG
GTCAGGAGACGCTGATCACGCAGATCGTGAGCATGAACCGCCAGCAGTCC
GATCCCGCAATCAAGGCGCTCAACAAACGAGTAATCCGACTGAACGAATC
CGAGATTCTGGGCAAGTTGGCCCGCGTCCTCGAAGTGGACCCCAGCGTGC
TCATCCTGGGCAAGAACCCGGCCGGCAAGGTGGAGCTCAAAGCTCTGGCC
ACCAAGCTGGACGTGACCACTTTCATTGCCGCCGGCAAGCAGAAGCCCAA
GGCCAATGGCACCACCAACGGCGGCAGCCACTAAACTGGAGCGTTCTCCA
GTTCCTGATCTGTGTCCTAAAAATCCAACCACCTACAGACTATGTTACGC
ATTTTTAACTTATACCCGCATGCATTTTGATTATATCAAATAAAGTTTTA
TCCTAAAGTATCAAAAAAAAAAAAAAAAAA

LD21426.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1753-RA 1930 CG1753-RA 160..1924 1..1765 8825 100 Plus
CG1753-RB 1994 CG1753-RB 291..1993 63..1765 8515 100 Plus
nc_25029.a 219 nc_25029.a 24..86 1..63 315 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20912714..20913755 289..1330 5210 100 Plus
chrX 22417052 chrX 20913821..20914253 1330..1762 2165 100 Plus
chrX 22417052 chrX 20912344..20912569 63..288 1130 100 Plus
chrX 22417052 chrX 20910444..20910506 1..63 315 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21047557..21048598 289..1330 5210 100 Plus
X 23542271 X 21048664..21049099 1330..1765 2180 100 Plus
X 23542271 X 21047187..21047412 63..288 1130 100 Plus
X 23542271 X 21045287..21045349 1..63 315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21032649..21033690 289..1330 5210 100 Plus
X 23527363 X 21033756..21034191 1330..1765 2180 100 Plus
X 23527363 X 21032279..21032504 63..288 1130 100 Plus
X 23527363 X 21030379..21030441 1..63 315 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:00:51 has no hits.

LD21426.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:01:29 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20910444..20910506 1..63 100 -> Plus
chrX 20912345..20912569 64..288 100 -> Plus
chrX 20912714..20913755 289..1330 100 -> Plus
chrX 20913822..20914253 1331..1762 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:06 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RB 1..1569 66..1634 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:00 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RB 1..1569 66..1634 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:06:39 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 1..1569 66..1634 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:38 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RB 1..1569 66..1634 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:07 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 1..1569 66..1634 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:51 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RA 150..1911 1..1762 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:00 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RA 150..1911 1..1762 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:39 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 150..1911 1..1762 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:38 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RA 150..1911 1..1762 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:07 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 150..1911 1..1762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:29 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
X 21045287..21045349 1..63 100 -> Plus
X 21047188..21047412 64..288 100 -> Plus
X 21047557..21048598 289..1330 100 -> Plus
X 21048665..21049096 1331..1762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:29 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
X 21045287..21045349 1..63 100 -> Plus
X 21047188..21047412 64..288 100 -> Plus
X 21047557..21048598 289..1330 100 -> Plus
X 21048665..21049096 1331..1762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:29 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
X 21045287..21045349 1..63 100 -> Plus
X 21047188..21047412 64..288 100 -> Plus
X 21047557..21048598 289..1330 100 -> Plus
X 21048665..21049096 1331..1762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:39 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20916314..20916376 1..63 100 -> Plus
arm_X 20918215..20918439 64..288 100 -> Plus
arm_X 20918584..20919625 289..1330 100 -> Plus
arm_X 20919692..20920123 1331..1762 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:32 Download gff for LD21426.complete
Subject Subject Range Query Range Percent Splice Strand
X 21030379..21030441 1..63 100 -> Plus
X 21032280..21032504 64..288 100 -> Plus
X 21032649..21033690 289..1330 100 -> Plus
X 21033757..21034188 1331..1762 100   Plus

LD21426.pep Sequence

Translation from 65 to 1633

> LD21426.pep
MPQPKPYERPADFIDPGKPSKCKWHLGTAEKSPHIHRGIAHRQQITPNIL
EVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE
EQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSAL
RTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLA
HYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVD
PYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDC
FPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNY
MTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVG
EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIK
ALNKRVIRLNESEILGKLARVLEVDPSVLILGKNPAGKVELKALATKLDV
TTFIAAGKQKPKANGTTNGGSH*

LD21426.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21711-PA 522 GF21711-PA 1..522 1..522 2429 88.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19705-PA 522 GG19705-PA 1..522 1..522 2741 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22312-PA 520 GH22312-PA 1..518 1..519 2201 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-PC 522 CG1753-PC 1..522 1..522 2734 100 Plus
Cbs-PB 522 CG1753-PB 1..522 1..522 2734 100 Plus
Cbs-PA 522 CG1753-PA 1..522 1..522 2734 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22982-PA 520 GI22982-PA 1..520 1..522 2270 82.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16398-PA 501 GL16398-PA 1..501 1..522 2201 81.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14544-PA 524 GA14544-PA 1..524 1..522 2376 85.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23059-PA 522 GM23059-PA 1..522 1..522 2734 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17507-PA 489 GD17507-PA 1..488 1..488 2557 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24676-PA 520 GJ24676-PA 1..520 1..522 2259 79.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25034-PA 521 GK25034-PA 1..521 1..522 2202 81.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17904-PA 567 GE17904-PA 46..567 1..522 2737 97.3 Plus

LD21426.hyp Sequence

Translation from 65 to 1633

> LD21426.hyp
MPQPKPYERPADFIDPGKPSKCKWHLGTAEKSPHIHRGIAHRQQITPNIL
EVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE
EQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSAL
RTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLA
HYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVD
PYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDC
FPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNY
MTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVG
EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIK
ALNKRVIRLNESEILGKLARVLEVDPSVLILGKNPAGKVELKALATKLDV
TTFIAAGKQKPKANGTTNGGSH*

LD21426.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-PC 522 CG1753-PC 1..522 1..522 2734 100 Plus
Cbs-PB 522 CG1753-PB 1..522 1..522 2734 100 Plus
Cbs-PA 522 CG1753-PA 1..522 1..522 2734 100 Plus