BDGP Sequence Production Resources |
Search the DGRC for LD21452
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 214 |
Well: | 52 |
Vector: | pOT2 |
Associated Gene/Transcript | TwdlW-RA |
Protein status: | LD21452.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1126 |
Gene | Date | Evidence |
---|---|---|
CG4060 | 2001-01-01 | Release 2 assignment |
CG4060 | 2002-07-13 | Blastp of sequenced clone |
CG4060 | 2003-01-01 | Sim4 clustering to Release 3 |
TwdlW | 2008-04-29 | Release 5.5 accounting |
TwdlW | 2008-08-15 | Release 5.9 accounting |
TwdlW | 2008-12-18 | 5.12 accounting |
1126 bp (1126 high quality bases) assembled on 2002-07-13
GenBank Submission: BT001478
> LD21452.complete AAACTCGGACAGCGAGGGAGCATCCGGCTTAAGACAGCTAACCAGCAGAG AGACACCCACCCAAGCGGCAGCATGAAGATATTTGTGACGGTTCTGATGG GCGCCATGTGCCTGAGCCTCAGCCAGGCTGACATCAGCTTGACCCAGGCG GGTTACAACTACCGCATCCAACAGCAGCAGCAGCAACAGCAACCGCCCAT TGTGGCCCACCTGTTGAACCAGCAACTGCAGCAGCAGCAGCAGCTCCAGC CCCAGCAATCCTCGCACCCGGTGCTTCCACCTCTCCCACTGCCCTACCTC CCGCCCGCTGGCCAGTTCCATTCTGCCCAGCCTGCAGTTCGTCCCACAGC CGGATCGTTTCCCATGCCCGCCGGCTTCCCCGTCAATTTCCAGACCGCTC CCATCCAGCAGCAGCGACGCGCTCGTCCGCGTGTCAGGATTCCCAAGCGT CCCATTGTGACCAAAAACTTTTTCATCCACTCGGCGCCCGAGGAGTCTGA GGATGAGGTCCAGGACGAGCTGAACCAGTTGGCCCAGCAGCCCCGTAACC ACTACAATGTGCTGTTCGTCAAGACGCCGGCTCAGACCAATCGCGCGGCG GCTCTTAACTTGGCCAAGACCCTTAAGCAGGAGAAGACCGTGGTCTATGT GCTGGCCAAGAAGACGACCGCCTCCGATCTGCAGGATGCCATTGCCGAGG CGCCACAGCACATCAATAAGCCGGAGGTGTTCTTCATCAAGTACCGCACT CCAGAGGAAGCTCTGAATGCCCAGCGGCAGATTCAGTCACAGTACGATAC TTTGGGAGGAAGTTCGACCATCACCGACGAGGGTGTGGCCCCCATCACCT CGGTGGTGGGATCCCTGGATCCTCCAGAGGAGGAGGAGGAGGAACAGCAA CAGCAGCAACATTCAGAGGGACAATTTGCGGAGAACGGTGCCGGAAACTC TGGCGTCGGTCCCATCGGCAATCATTATTTGCCCGCGAACCAGTTCTAAG TATTCTTCATTGCTCGTCACATCCAGATCTAGTTAGCTGTCATCAACACC ACTTAGGTTTAAGTGCTTGCCAATGTTACCCAAATCCGTATTAAAATATA ATTGTTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TwdlW-RA | 1406 | TwdlW-RA | 241..1356 | 1..1116 | 5580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6869 | 155..268 | 206 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6892 | 156..258 | 197 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6820 | 145..258 | 190 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6870 | 155..288 | 184 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2526 | 156..289 | 179 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2405 | 159..258 | 173 | 65 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1161 | 169..257 | 161 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2560 | 156..277 | 159 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2430 | 156..250 | 157 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2455 | 169..257 | 155 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2888 | 156..258 | 152 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6946 | 155..288 | 151 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6920 | 155..244 | 147 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2869 | 155..257 | 141 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2682 | 170..260 | 135 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6893 | 156..193 | 124 | 84.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 940..999 | 132..193 | 124 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1581 | 156..196 | 121 | 80.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1108..1148 | 152..193 | 117 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1121..1157 | 156..193 | 115 | 81.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5636..5673 | 155..193 | 111 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6768 | 861..911 | 111 | 68.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 12965649..12966479 | 258..1088 | 99 | == | Minus |
chr3R | 12966569..12966649 | 88..168 | 100 | <- | Minus |
chr3R | 12966721..12966807 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 1..927 | 73..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 1..927 | 73..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 1..927 | 73..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 1..927 | 73..999 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 15..1120 | 1..1106 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 15..1120 | 1..1106 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 21..1126 | 1..1106 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 15..1120 | 1..1106 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TwdlW-RA | 21..1126 | 1..1106 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17141208..17142226 | 88..1106 | 100 | <- | Minus |
3R | 17142298..17142384 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17141208..17142226 | 88..1106 | 100 | <- | Minus |
3R | 17142298..17142384 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17141208..17142226 | 88..1106 | 100 | <- | Minus |
3R | 17142298..17142384 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 12966930..12967948 | 88..1106 | 100 | <- | Minus |
arm_3R | 12968020..12968106 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16882039..16883057 | 88..1106 | 100 | <- | Minus |
3R | 16883129..16883215 | 1..87 | 100 | Minus |
Translation from 0 to 998
> LD21452.hyp KLGQRGSIRLKTANQQRDTHPSGSMKIFVTVLMGAMCLSLSQADISLTQA GYNYRIQQQQQQQQPPIVAHLLNQQLQQQQQLQPQQSSHPVLPPLPLPYL PPAGQFHSAQPAVRPTAGSFPMPAGFPVNFQTAPIQQQRRARPRVRIPKR PIVTKNFFIHSAPEESEDEVQDELNQLAQQPRNHYNVLFVKTPAQTNRAA ALNLAKTLKQEKTVVYVLAKKTTASDLQDAIAEAPQHINKPEVFFIKYRT PEEALNAQRQIQSQYDTLGGSSTITDEGVAPITSVVGSLDPPEEEEEEQQ QQQHSEGQFAENGAGNSGVGPIGNHYLPANQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TwdlW-PA | 308 | CG4060-PA | 1..308 | 25..332 | 1590 | 100 | Plus |
TwdlV-PA | 251 | CG14640-PA | 51..250 | 113..330 | 376 | 42.5 | Plus |
TwdlG-PC | 278 | CG14643-PC | 19..275 | 51..330 | 371 | 35.5 | Plus |
TwdlG-PB | 278 | CG14643-PB | 19..275 | 51..330 | 371 | 35.5 | Plus |
TwdlG-PA | 278 | CG14643-PA | 19..275 | 51..330 | 371 | 35.5 | Plus |
Translation from 72 to 998
> LD21452.pep MKIFVTVLMGAMCLSLSQADISLTQAGYNYRIQQQQQQQQPPIVAHLLNQ QLQQQQQLQPQQSSHPVLPPLPLPYLPPAGQFHSAQPAVRPTAGSFPMPA GFPVNFQTAPIQQQRRARPRVRIPKRPIVTKNFFIHSAPEESEDEVQDEL NQLAQQPRNHYNVLFVKTPAQTNRAAALNLAKTLKQEKTVVYVLAKKTTA SDLQDAIAEAPQHINKPEVFFIKYRTPEEALNAQRQIQSQYDTLGGSSTI TDEGVAPITSVVGSLDPPEEEEEEQQQQQHSEGQFAENGAGNSGVGPIGN HYLPANQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17860-PA | 309 | GF17860-PA | 1..309 | 1..308 | 1114 | 84.5 | Plus |
Dana\GF16822-PA | 238 | GF16822-PA | 71..212 | 128..268 | 342 | 49.3 | Plus |
Dana\GF19934-PA | 278 | GF19934-PA | 67..209 | 126..263 | 332 | 52.1 | Plus |
Dana\GF18197-PA | 263 | GF18197-PA | 90..262 | 128..306 | 317 | 47.2 | Plus |
Dana\GF22658-PA | 345 | GF22658-PA | 138..273 | 129..265 | 291 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16788-PA | 301 | GG16788-PA | 1..301 | 1..308 | 1236 | 87.8 | Plus |
Dere\GG11741-PA | 269 | GG11741-PA | 104..266 | 129..306 | 352 | 44.1 | Plus |
Dere\GG12219-PA | 347 | GG12219-PA | 137..284 | 125..266 | 326 | 50.3 | Plus |
Dere\GG12230-PA | 252 | GG12230-PA | 77..251 | 128..306 | 318 | 46.7 | Plus |
Dere\GG19072-PA | 322 | GG19072-PA | 123..258 | 129..265 | 296 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14248-PA | 305 | GH14248-PA | 95..305 | 96..308 | 925 | 86.4 | Plus |
Dgri\GH21845-PA | 288 | GH21845-PA | 107..246 | 127..266 | 359 | 48.6 | Plus |
Dgri\GH19057-PA | 287 | GH19057-PA | 84..220 | 128..265 | 355 | 52.2 | Plus |
Dgri\GH19046-PA | 379 | GH19046-PA | 98..274 | 126..293 | 310 | 42.6 | Plus |
Dgri\GH11916-PA | 242 | GH11916-PA | 73..211 | 127..266 | 294 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TwdlW-PA | 308 | CG4060-PA | 1..308 | 1..308 | 1590 | 100 | Plus |
TwdlV-PA | 251 | CG14640-PA | 51..250 | 89..306 | 376 | 42.5 | Plus |
TwdlG-PC | 278 | CG14643-PC | 19..275 | 27..306 | 371 | 35.5 | Plus |
TwdlG-PB | 278 | CG14643-PB | 19..275 | 27..306 | 371 | 35.5 | Plus |
TwdlG-PA | 278 | CG14643-PA | 19..275 | 27..306 | 371 | 35.5 | Plus |
TwdlF-PA | 354 | CG14639-PA | 82..281 | 66..266 | 341 | 41.5 | Plus |
Twdlalpha-PA | 388 | CG32574-PA | 153..350 | 109..302 | 313 | 37.7 | Plus |
TwdlY-PA | 247 | CG32570-PA | 76..214 | 127..266 | 301 | 43.6 | Plus |
TwdlX-PA | 346 | CG32571-PA | 147..282 | 129..265 | 300 | 44.5 | Plus |
TwdlZ-PB | 210 | CG32569-PB | 19..206 | 113..298 | 277 | 34.6 | Plus |
TwdlQ-PA | 245 | CG14250-PA | 76..228 | 130..278 | 273 | 40.9 | Plus |
Tb-PA | 283 | CG5480-PA | 90..239 | 131..279 | 263 | 38.8 | Plus |
TwdlD-PA | 256 | CG14243-PA | 33..215 | 73..264 | 262 | 36.4 | Plus |
TwdlB-PA | 286 | CG6478-PA | 126..253 | 131..257 | 257 | 48.8 | Plus |
TwdlL-PB | 279 | CG6447-PB | 120..247 | 131..257 | 256 | 48.8 | Plus |
TwdlL-PA | 285 | CG6447-PA | 126..253 | 131..257 | 256 | 48.8 | Plus |
TwdlJ-PB | 274 | CG5471-PB | 39..267 | 78..306 | 247 | 33.9 | Plus |
TwdlM-PA | 288 | CG5468-PA | 130..258 | 131..258 | 245 | 45.4 | Plus |
TwdlN-PA | 309 | CG5476-PA | 147..273 | 131..256 | 245 | 47.7 | Plus |
TwdlH-PA | 241 | CG31080-PA | 81..209 | 131..258 | 236 | 43.8 | Plus |
TwdlK-PA | 247 | CG6460-PA | 36..225 | 78..269 | 232 | 35.1 | Plus |
TwdlP-PA | 220 | CG14240-PA | 34..208 | 93..280 | 230 | 34.7 | Plus |
TwdlO-PA | 229 | CG6452-PA | 66..186 | 140..256 | 225 | 45.5 | Plus |
TwdlR-PA | 325 | CG31081-PA | 70..228 | 131..307 | 215 | 35.8 | Plus |
TwdlC-PA | 360 | CG14254-PA | 28..308 | 28..308 | 198 | 27.4 | Plus |
TwdlT-PA | 286 | CG5812-PA | 130..253 | 128..254 | 170 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23141-PA | 328 | GI23141-PA | 1..328 | 1..308 | 1002 | 69.6 | Plus |
Dmoj\GI10848-PA | 268 | GI10848-PA | 84..265 | 127..304 | 369 | 45.9 | Plus |
Dmoj\GI21932-PA | 273 | GI21932-PA | 93..270 | 127..306 | 360 | 41.9 | Plus |
Dmoj\GI10847-PA | 372 | GI10847-PA | 146..289 | 125..264 | 303 | 47.9 | Plus |
Dmoj\GI14654-PA | 562 | GI14654-PA | 393..531 | 127..266 | 301 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27212-PA | 312 | GL27212-PA | 1..312 | 1..308 | 1008 | 84.6 | Plus |
Dper\GL12334-PA | 296 | GL12334-PA | 130..293 | 128..306 | 338 | 44.4 | Plus |
Dper\GL12309-PA | 437 | GL12309-PA | 264..397 | 128..265 | 302 | 53.6 | Plus |
Dper\GL24435-PA | 251 | GL24435-PA | 83..212 | 130..258 | 258 | 45.1 | Plus |
Dper\GL26861-PA | 223 | GL26861-PA | 34..173 | 127..265 | 257 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17925-PA | 314 | GA17925-PA | 1..314 | 1..308 | 991 | 82.8 | Plus |
Dpse\GA13142-PA | 296 | GA13142-PA | 130..293 | 128..306 | 337 | 44.4 | Plus |
Dpse\GA13137-PA | 353 | GA13137-PA | 148..291 | 125..263 | 333 | 50.3 | Plus |
Dpse\GA13139-PA | 256 | GA13139-PA | 83..216 | 128..265 | 303 | 53.6 | Plus |
Dpse\GA16997-PA | 254 | GA16997-PA | 78..216 | 127..266 | 292 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15381-PA | 306 | GM15381-PA | 1..306 | 1..308 | 1548 | 97.4 | Plus |
Dsec\GM10719-PA | 281 | GM10719-PA | 116..278 | 129..306 | 350 | 44.1 | Plus |
Dsec\GM10738-PA | 357 | GM10738-PA | 137..284 | 125..266 | 324 | 50.3 | Plus |
Dsec\GM10739-PA | 254 | GM10739-PA | 81..253 | 128..306 | 321 | 47.8 | Plus |
Dsec\GM13463-PA | 247 | GM13463-PA | 76..214 | 127..266 | 292 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20247-PA | 303 | GD20247-PA | 1..303 | 1..308 | 1539 | 97.1 | Plus |
Dsim\GD19694-PA | 278 | GD19694-PA | 113..275 | 129..306 | 347 | 43.6 | Plus |
Dsim\GD19709-PA | 357 | GD19709-PA | 137..284 | 125..266 | 325 | 50.3 | Plus |
Dsim\GD19711-PA | 255 | GD19711-PA | 82..254 | 128..306 | 321 | 47.8 | Plus |
Dsim\GD17302-PA | 346 | GD17302-PA | 147..282 | 129..265 | 291 | 44.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10443-PA | 300 | GJ10443-PA | 1..300 | 1..308 | 1014 | 80.1 | Plus |
Dvir\GJ14455-PA | 269 | GJ14455-PA | 89..223 | 127..262 | 391 | 53.7 | Plus |
Dvir\GJ14291-PA | 281 | GJ14291-PA | 111..278 | 127..306 | 350 | 43.1 | Plus |
Dvir\GJ14454-PA | 344 | GJ14454-PA | 118..261 | 125..264 | 301 | 47.9 | Plus |
Dvir\GJ19306-PA | 246 | GJ19306-PA | 77..215 | 127..266 | 295 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10882-PA | 315 | GK10882-PA | 1..315 | 1..308 | 1006 | 78.5 | Plus |
Dwil\GK22650-PA | 292 | GK22650-PA | 120..289 | 128..306 | 341 | 43.6 | Plus |
Dwil\GK22519-PA | 265 | GK22519-PA | 91..264 | 128..306 | 326 | 46.7 | Plus |
Dwil\GK22518-PA | 337 | GK22518-PA | 136..278 | 126..263 | 312 | 47.2 | Plus |
Dwil\GK25415-PA | 249 | GK25415-PA | 82..220 | 127..266 | 296 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24178-PA | 269 | GE24178-PA | 71..269 | 115..308 | 907 | 94.5 | Plus |
Dyak\GE25368-PA | 265 | GE25368-PA | 82..238 | 109..266 | 342 | 47.2 | Plus |
Dyak\GE25399-PA | 334 | GE25399-PA | 124..271 | 125..266 | 329 | 51 | Plus |
Dyak\GE25400-PA | 250 | GE25400-PA | 77..249 | 128..306 | 312 | 47.8 | Plus |
Dyak\GE17618-PA | 247 | GE17618-PA | 76..214 | 127..266 | 293 | 44.3 | Plus |