Clone LD21529 Report

Search the DGRC for LD21529

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:215
Well:29
Vector:pOT2
Associated Gene/TranscriptCG7686-RA
Protein status:LD21529.pep: gold
Preliminary Size:1645
Sequenced Size:1665

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7686 2000-02-14 Blastp of sequenced clone
CG7686 2001-01-01 Release 2 assignment
CG7686 2003-01-01 Sim4 clustering to Release 3
CG7686 2008-04-29 Release 5.5 accounting
CG7686 2008-08-15 Release 5.9 accounting
CG7686 2008-12-18 5.12 accounting

Clone Sequence Records

LD21529.complete Sequence

1665 bp (1665 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132172

> LD21529.complete
CAGCAGGCACATGTGTTTCTCTGTATTTACAAAAGATTTTACGAAAACAA
TCCAATAATGGTTAAGGGCAAGAAACCGTACATTGACCGCAAGAAGGCGG
TCACCTTCCATTTGGTGCACCGCAGTCAACACGATCCCCTGGTGACCGAT
GAAAATGCTCCACAGAGGGTGCTCCTCGAGGCAGCGGCGCGCCAGCAAAA
GCCGAAGGATCCAGAGCCACCCACCGATCCCGCCCAACGGCAGGAGGAGC
TGAAGAAGTTTGGTATTCACTTCGACGATGACTATGATTACATGCAGCAT
CTGAAGAAACGTGAAAACGACGTGGTTTGGGAGTTCATGGAGAATCCCAA
TCAAGCGAGAAAGCAGAAAGTCCAGGATAGTGAGAAACCGGGCCCTGCGC
CCAAGCTTATGCTGCCCAGCTCGGTGTTCGCTAGCGAGTTTGAGGAATCC
GAGGGCATGCTAAACAAGGCGGCTCCTCAAACCTTGCGTCTCGACTGGGA
TCCCGATGTGGTCGCCGCCCTGGACAGCGATTGTGAGAACGAAGAGCTGG
AAGATGACTTCGTAATCCAGGCCATGGCCGAGGGCGACTCCGACGACGAG
GAATGGGATGACGAAGATGGGGAGGAGCAATCTGACATGGACTTCGATTC
CGATGACCTAAACGAGGATGAAAATGAGGACGAACTAATGGACCGTTTGG
CACCCCTGATGCGCGAACGTCGCTTTGACGACGAAGAGGTCAAGTCGCGC
TTCACCGAGTACTCCATGTCCTCCAGCGTAATTCGGCGCAATGAGCAGCT
GTCCCTATTGGACGATCGCTTCGAGAAGTTTTACGCCACATACGATGATC
CGGAACTGGGCGACTTGGCTCTCGAGGACATCGAGGGCAACTGGCACCAG
AAACATCCCGTTGTGATGCAGTGCTTCCAGGAGTTCAAGAAAAAGGACAA
GGGCATCGAGTATAACAAGGAGTGGGATCGCGAGCGTATCGAAAAGTACC
GAAATGTGGTCGAGGGTGAGGAAGATCCCACAGAGGAGTTGGTGGAATAT
GAGGTCGACGACCCTAAGCAGAAGAAGTGGGACTGCGAGTCTATCCTGTC
CACCTACTCGAATATCTACAATCACCCGAAGGTGATCGACGAGCCGCGAC
GCAGTCGTCGCTCCAGTGCCAGCACAAATCCAGCTCCCATTCAGATCGAC
CCGAAGACAGGCCTGCCCACGAATGTCCTGCGTGGTGGGGTCGATGGCCA
ACTGACAGCCAAGGCGCTTGCTAATTTGGCCGATGAATCACCCGCTGCCA
CTGGGCCGAAGTCACTGTGCGCCAAATCGGTGCTCTCCACATTAAGCGTT
CTGTCCATTAGACCCAAGGACGAGACCCACGAAGAGAAAAAGGAGCGGAA
GCGCCTGCTGAAGGACTATCGCAACGAGCGTCGCATCGAAAAGAAGGCCA
ACACGGAGGCCTTCAAGGAGGAAAAGAAGCGGCAGACGCACGTGAAGATC
AACCAGCGAACCAACCAACAGGGAGCCTCCATTGTCTAGCTTAAGTTTCC
GGCTCTGTTCTCTAGGCTTAAATGTGAAATGTATACACAGCGGCGTATAT
GTTAAGTGATATCTATAAACGAACGATTGGATAAACGACAAAAAAAAAAA
AAAAAAAAAAAAAAA

LD21529.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7686.a 2098 CG7686.a 21..1662 1..1642 8210 100 Plus
CG7686-RA 1837 CG7686-RA 28..1669 1..1642 8210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6724572..6726151 1639..60 7750 99.4 Minus
chr2R 21145070 chr2R 6726208..6726269 62..1 310 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10837006..10838588 1642..60 7915 100 Minus
2R 25286936 2R 10838645..10838706 62..1 310 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10838205..10839787 1642..60 7915 100 Minus
2R 25260384 2R 10839844..10839905 62..1 310 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:05:32 has no hits.

LD21529.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:06:38 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6724572..6726150 61..1639 99 <- Minus
chr2R 6726210..6726269 1..60 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:17 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 1..1482 58..1539 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:34:51 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 1..1482 58..1539 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:07:52 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 1..1482 58..1539 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:10:33 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 1..1482 58..1539 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:21 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 1..1482 58..1539 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:37:29 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 21..1659 1..1639 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:34:51 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 21..1659 1..1639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:07:52 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 22..1660 1..1639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:10:34 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 21..1659 1..1639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:21 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
CG7686-RA 22..1660 1..1639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:38 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10837009..10838587 61..1639 100 <- Minus
2R 10838647..10838706 1..60 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:38 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10837009..10838587 61..1639 100 <- Minus
2R 10838647..10838706 1..60 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:38 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10837009..10838587 61..1639 100 <- Minus
2R 10838647..10838706 1..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:07:52 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6724514..6726092 61..1639 100 <- Minus
arm_2R 6726152..6726211 1..60 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:47:03 Download gff for LD21529.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10838208..10839786 61..1639 100 <- Minus
2R 10839846..10839905 1..60 100   Minus

LD21529.hyp Sequence

Translation from 0 to 1538

> LD21529.hyp
QQAHVFLCIYKRFYENNPIMVKGKKPYIDRKKAVTFHLVHRSQHDPLVTD
ENAPQRVLLEAAARQQKPKDPEPPTDPAQRQEELKKFGIHFDDDYDYMQH
LKKRENDVVWEFMENPNQARKQKVQDSEKPGPAPKLMLPSSVFASEFEES
EGMLNKAAPQTLRLDWDPDVVAALDSDCENEELEDDFVIQAMAEGDSDDE
EWDDEDGEEQSDMDFDSDDLNEDENEDELMDRLAPLMRERRFDDEEVKSR
FTEYSMSSSVIRRNEQLSLLDDRFEKFYATYDDPELGDLALEDIEGNWHQ
KHPVVMQCFQEFKKKDKGIEYNKEWDRERIEKYRNVVEGEEDPTEELVEY
EVDDPKQKKWDCESILSTYSNIYNHPKVIDEPRRSRRSSASTNPAPIQID
PKTGLPTNVLRGGVDGQLTAKALANLADESPAATGPKSLCAKSVLSTLSV
LSIRPKDETHEEKKERKRLLKDYRNERRIEKKANTEAFKEEKKRQTHVKI
NQRTNQQGASIV*

LD21529.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7686-PB 493 CG7686-PB 1..493 20..512 2594 100 Plus
CG7686-PA 493 CG7686-PA 1..493 20..512 2594 100 Plus

LD21529.pep Sequence

Translation from 57 to 1538

> LD21529.pep
MVKGKKPYIDRKKAVTFHLVHRSQHDPLVTDENAPQRVLLEAAARQQKPK
DPEPPTDPAQRQEELKKFGIHFDDDYDYMQHLKKRENDVVWEFMENPNQA
RKQKVQDSEKPGPAPKLMLPSSVFASEFEESEGMLNKAAPQTLRLDWDPD
VVAALDSDCENEELEDDFVIQAMAEGDSDDEEWDDEDGEEQSDMDFDSDD
LNEDENEDELMDRLAPLMRERRFDDEEVKSRFTEYSMSSSVIRRNEQLSL
LDDRFEKFYATYDDPELGDLALEDIEGNWHQKHPVVMQCFQEFKKKDKGI
EYNKEWDRERIEKYRNVVEGEEDPTEELVEYEVDDPKQKKWDCESILSTY
SNIYNHPKVIDEPRRSRRSSASTNPAPIQIDPKTGLPTNVLRGGVDGQLT
AKALANLADESPAATGPKSLCAKSVLSTLSVLSIRPKDETHEEKKERKRL
LKDYRNERRIEKKANTEAFKEEKKRQTHVKINQRTNQQGASIV*

LD21529.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11080-PA 490 GF11080-PA 1..490 1..493 2114 87.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22712-PA 493 GG22712-PA 1..493 1..493 2533 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21429-PA 484 GH21429-PA 1..484 1..493 1941 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
LTV1-PB 493 CG7686-PB 1..493 1..493 2594 100 Plus
LTV1-PA 493 CG7686-PA 1..493 1..493 2594 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20652-PA 489 GI20652-PA 1..489 1..493 1965 79 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17173-PA 495 GL17173-PA 1..495 1..493 2120 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25022-PA 495 GA25022-PA 1..495 1..493 2146 85.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20488-PA 491 GM20488-PA 1..491 1..493 2560 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25950-PA 491 GD25950-PA 1..491 1..493 2549 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20401-PA 490 GJ20401-PA 1..490 1..493 2028 80.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23272-PA 493 GK23272-PA 1..493 1..493 2026 83.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13069-PA 493 GE13069-PA 1..493 1..493 2565 97.8 Plus