BDGP Sequence Production Resources |
Search the DGRC for LD21568
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 215 |
Well: | 68 |
Vector: | pOT2 |
Associated Gene/Transcript | His2Av-RA |
Protein status: | LD21568.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 904 |
Gene | Date | Evidence |
---|---|---|
CG5499 | 2001-01-01 | Release 2 assignment |
CG5499 | 2002-05-16 | Blastp of sequenced clone |
CG5499 | 2003-01-01 | Sim4 clustering to Release 3 |
His2Av | 2008-04-29 | Release 5.5 accounting |
His2Av | 2008-08-15 | Release 5.9 accounting |
His2Av | 2008-12-18 | 5.12 accounting |
904 bp (904 high quality bases) assembled on 2002-05-16
GenBank Submission: AY118910
> LD21568.complete AAACAACTCGCACGCTCCGGTTTCGTGTTGCAACAAAATAGGCATTCCCA TCGCGGCAGTTAGAATCACCGAGTGCCCAGAGTCACGTTCGTAAGCAGGC GCAGTTTACAGGCAGCAGAAAAATCGATTGAACAGAAATGGCTGGCGGTA AAGCAGGCAAGGATTCGGGCAAGGCCAAGGCGAAGGCGGTATCGCGTTCC GCGCGCGCGGGTCTTCAGTTCCCCGTGGGTCGCATCCATCGTCATCTCAA GAGCCGCACTACGTCACATGGACGCGTCGGAGCCACTGCAGCCGTGTACT CCGCTGCCATATTGGAATACCTGACCGCCGAGGTCCTGGAGTTGGCAGGC AACGCATCGAAGGACTTGAAAGTGAAACGTATCACTCCTCGCCACTTACA GCTCGCCATTCGCGGAGACGAGGAGCTGGACAGCCTGATCAAGGCAACCA TCGCTGGTGGCGGTGTCATTCCGCACATACACAAGTCGCTGATCGGCAAA AAGGAGGAAACGGTGCAGGATCCGCAGCGGAAGGGCAACGTCATTCTGTC GCAGGCCTACTAAGCCAGTCGGCAATCGGACGCCTTCGAAACATGCAACA CTAATGTTTAATTCAGATTTCAGCAGAGACAAGCTAAAACACCGACGAGT TGTAATCATTCTGTGCGCCAGCATATATTTCTTATATACAACGTAATACA TAATTATGTAATTCTAGCATCTCCCCAACACTCACATACATACAAACAAA AAATACAAACACACAAAACGTATTTACCCGCACGCATCCTTGGCGAGGTT GAGTATGAAACAAAAACAAAACTTAATTTAGAGCAAAGTAATTACACGAA TAAATTTAATAAAAAAACTATAATAAAAACGCCAAAAAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
His2Av.b | 1289 | His2Av.b | 111..997 | 1..885 | 4355 | 99.7 | Plus |
His2Av-RA | 1057 | His2Av-RA | 138..1024 | 1..885 | 4355 | 99.7 | Plus |
His2Av.a | 897 | His2Av.a | 412..897 | 400..883 | 2350 | 99.5 | Plus |
His2Av.a | 897 | His2Av.a | 82..413 | 1..332 | 1660 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 22691482..22692036 | 331..883 | 2675 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 22690084..22690224 | 1..141 | 705 | 100 | Plus |
chr3R | 27901430 | chr3R | 22690794..22690912 | 216..334 | 595 | 100 | Plus |
chr3R | 27901430 | chr3R | 22690536..22690614 | 140..218 | 395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 26868354..26868910 | 331..885 | 2685 | 99.6 | Plus |
3R | 32079331 | 3R | 26866956..26867096 | 1..141 | 705 | 100 | Plus |
3R | 32079331 | 3R | 26867666..26867784 | 216..334 | 595 | 100 | Plus |
3R | 32079331 | 3R | 26867408..26867486 | 140..218 | 395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26609185..26609741 | 331..885 | 2705 | 99.6 | Plus |
3R | 31820162 | 3R | 26607787..26607927 | 1..141 | 705 | 100 | Plus |
3R | 31820162 | 3R | 26608497..26608615 | 216..334 | 595 | 100 | Plus |
3R | 31820162 | 3R | 26608239..26608317 | 140..218 | 395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 714..794 | 800..879 | 132 | 65.9 | Plus |
P-element | 2907 | P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). | 2650..2715 | 802..865 | 118 | 66.7 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 142..175 | 673..706 | 116 | 82.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 22690084..22690223 | 1..140 | 100 | -> | Plus |
chr3R | 22690537..22690614 | 141..218 | 100 | -> | Plus |
chr3R | 22690797..22690910 | 219..332 | 100 | -> | Plus |
chr3R | 22691484..22691999 | 333..847 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 1..426 | 138..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 1..426 | 138..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 1..426 | 138..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 1..426 | 138..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 1..426 | 138..563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 26..910 | 1..883 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 26..910 | 1..883 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 28..912 | 1..883 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 26..910 | 1..883 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
His2Av-RA | 28..912 | 1..883 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26868356..26868908 | 333..883 | 99 | Plus | |
3R | 26866956..26867095 | 1..140 | 100 | -> | Plus |
3R | 26867409..26867486 | 141..218 | 100 | -> | Plus |
3R | 26867669..26867782 | 219..332 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26868356..26868908 | 333..883 | 99 | Plus | |
3R | 26866956..26867095 | 1..140 | 100 | -> | Plus |
3R | 26867409..26867486 | 141..218 | 100 | -> | Plus |
3R | 26867669..26867782 | 219..332 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26868356..26868908 | 333..883 | 99 | Plus | |
3R | 26866956..26867095 | 1..140 | 100 | -> | Plus |
3R | 26867409..26867486 | 141..218 | 100 | -> | Plus |
3R | 26867669..26867782 | 219..332 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 22692678..22692817 | 1..140 | 100 | -> | Plus |
arm_3R | 22693131..22693208 | 141..218 | 100 | -> | Plus |
arm_3R | 22693391..22693504 | 219..332 | 100 | -> | Plus |
arm_3R | 22694078..22694630 | 333..883 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26609187..26609739 | 333..883 | 99 | Plus | |
3R | 26607787..26607926 | 1..140 | 100 | -> | Plus |
3R | 26608240..26608317 | 141..218 | 100 | -> | Plus |
3R | 26608500..26608613 | 219..332 | 100 | -> | Plus |
Translation from 137 to 562
> LD21568.hyp MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGAT AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL IKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNVILSQAY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
His2Av-PB | 141 | CG5499-PB | 1..141 | 1..141 | 699 | 100 | Plus |
His2Av-PA | 141 | CG5499-PA | 1..141 | 1..141 | 699 | 100 | Plus |
His2A:CG33865-PA | 124 | CG33865-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33862-PA | 124 | CG33862-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33859-PA | 124 | CG33859-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
Translation from 137 to 562
> LD21568.pep MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGAT AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL IKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNVILSQAY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16458-PA | 141 | GF16458-PA | 1..141 | 1..141 | 715 | 100 | Plus |
Dana\GF20259-PA | 182 | GF20259-PA | 32..156 | 8..130 | 463 | 72.8 | Plus |
Dana\GF24586-PA | 126 | GF24586-PA | 1..122 | 1..125 | 329 | 59.1 | Plus |
Dana\GF15886-PA | 124 | GF15886-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dana\GF21515-PA | 124 | GF21515-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11506-PA | 141 | GG11506-PA | 1..141 | 1..141 | 711 | 99.3 | Plus |
Dere\GG13013-PA | 124 | GG13013-PA | 16..121 | 19..124 | 325 | 64.5 | Plus |
Dere\GG21312-PA | 124 | GG21312-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dere\GG18133-PA | 124 | GG18133-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dere\GG21305-PA | 124 | GG21305-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10352-PA | 152 | GH10352-PA | 13..152 | 2..141 | 704 | 99.3 | Plus |
Dgri\GH23505-PA | 124 | GH23505-PA | 14..121 | 17..124 | 323 | 64.2 | Plus |
Dgri\GH23503-PA | 124 | GH23503-PA | 14..121 | 17..124 | 323 | 64.2 | Plus |
Dgri\GH25186-PA | 124 | GH25186-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dgri\GH25184-PA | 124 | GH25184-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
His2Av-PB | 141 | CG5499-PB | 1..141 | 1..141 | 699 | 100 | Plus |
His2Av-PA | 141 | CG5499-PA | 1..141 | 1..141 | 699 | 100 | Plus |
His2A:CG33865-PA | 124 | CG33865-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33862-PA | 124 | CG33862-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33859-PA | 124 | CG33859-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33856-PA | 124 | CG33856-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33853-PA | 124 | CG33853-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33850-PA | 124 | CG33850-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33847-PA | 124 | CG33847-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33844-PA | 124 | CG33844-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33841-PA | 124 | CG33841-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33838-PA | 124 | CG33838-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33835-PA | 124 | CG33835-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33832-PA | 124 | CG33832-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33829-PA | 124 | CG33829-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33826-PA | 124 | CG33826-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33823-PA | 124 | CG33823-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33820-PA | 124 | CG33820-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33817-PA | 124 | CG33817-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33814-PA | 124 | CG33814-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33808-PA | 124 | CG33808-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG31618-PA | 124 | CG31618-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23052-PA | 152 | GI23052-PA | 13..152 | 2..141 | 702 | 98.6 | Plus |
Dmoj\GI16892-PA | 124 | GI16892-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dmoj\GI23445-PA | 124 | GI23445-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dmoj\GI23441-PA | 124 | GI23441-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dmoj\GI17254-PA | 124 | GI17254-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27227-PA | 141 | GL27227-PA | 1..141 | 1..141 | 711 | 99.3 | Plus |
Dper\GL23963-PA | 124 | GL23963-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dper\GL23960-PA | 124 | GL23960-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dper\GL23957-PA | 124 | GL23957-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dper\GL23953-PA | 124 | GL23953-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18930-PA | 141 | GA18930-PA | 1..141 | 1..141 | 711 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10348-PA | 141 | GM10348-PA | 1..141 | 1..141 | 715 | 100 | Plus |
Dsec\GM13182-PA | 124 | GM13182-PA | 7..121 | 10..124 | 345 | 64.7 | Plus |
Dsec\GM16110-PA | 124 | GM16110-PA | 16..121 | 19..124 | 325 | 64.5 | Plus |
Dsec\GM13581-PA | 124 | GM13581-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dsec\GM12072-PA | 124 | GM12072-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21310-PA | 141 | GD21310-PA | 1..141 | 1..141 | 715 | 100 | Plus |
Dsim\GD12842-PA | 124 | GD12842-PA | 5..121 | 7..124 | 345 | 64.7 | Plus |
Dsim\GD20626-PA | 124 | GD20626-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dsim\GD20328-PA | 124 | GD20328-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dsim\GD24267-PA | 124 | GD24267-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15170-PA | 140 | GJ15170-PA | 1..140 | 2..141 | 704 | 99.3 | Plus |
Dvir\GJ14581-PA | 124 | GJ14581-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dvir\GJ16341-PA | 124 | GJ16341-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dvir\GJ23706-PA | 124 | GJ23706-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dvir\GJ19813-PA | 124 | GJ19813-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13546-PA | 159 | GK13546-PA | 19..159 | 1..141 | 699 | 97.9 | Plus |
Dwil\GK23626-PA | 124 | GK23626-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dwil\GK10382-PA | 124 | GK10382-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dwil\GK18500-PA | 124 | GK18500-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dwil\GK18709-PA | 124 | GK18709-PA | 16..119 | 19..122 | 318 | 64.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23696-PA | 141 | GE23696-PA | 1..141 | 1..141 | 711 | 99.3 | Plus |
Dyak\GE15127-PA | 124 | GE15127-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dyak\GE14578-PA | 124 | GE14578-PA | 16..121 | 19..124 | 322 | 64.5 | Plus |
Dyak\GE15142-PA | 124 | GE15142-PA | 16..121 | 19..124 | 315 | 63.6 | Plus |
Dyak\GE14574-PA | 70 | GE14574-PA | 1..67 | 59..124 | 207 | 64.2 | Plus |