Clone LD21568 Report

Search the DGRC for LD21568

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:215
Well:68
Vector:pOT2
Associated Gene/TranscriptHis2Av-RA
Protein status:LD21568.pep: gold
Preliminary Size:1300
Sequenced Size:904

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5499 2001-01-01 Release 2 assignment
CG5499 2002-05-16 Blastp of sequenced clone
CG5499 2003-01-01 Sim4 clustering to Release 3
His2Av 2008-04-29 Release 5.5 accounting
His2Av 2008-08-15 Release 5.9 accounting
His2Av 2008-12-18 5.12 accounting

Clone Sequence Records

LD21568.complete Sequence

904 bp (904 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118910

> LD21568.complete
AAACAACTCGCACGCTCCGGTTTCGTGTTGCAACAAAATAGGCATTCCCA
TCGCGGCAGTTAGAATCACCGAGTGCCCAGAGTCACGTTCGTAAGCAGGC
GCAGTTTACAGGCAGCAGAAAAATCGATTGAACAGAAATGGCTGGCGGTA
AAGCAGGCAAGGATTCGGGCAAGGCCAAGGCGAAGGCGGTATCGCGTTCC
GCGCGCGCGGGTCTTCAGTTCCCCGTGGGTCGCATCCATCGTCATCTCAA
GAGCCGCACTACGTCACATGGACGCGTCGGAGCCACTGCAGCCGTGTACT
CCGCTGCCATATTGGAATACCTGACCGCCGAGGTCCTGGAGTTGGCAGGC
AACGCATCGAAGGACTTGAAAGTGAAACGTATCACTCCTCGCCACTTACA
GCTCGCCATTCGCGGAGACGAGGAGCTGGACAGCCTGATCAAGGCAACCA
TCGCTGGTGGCGGTGTCATTCCGCACATACACAAGTCGCTGATCGGCAAA
AAGGAGGAAACGGTGCAGGATCCGCAGCGGAAGGGCAACGTCATTCTGTC
GCAGGCCTACTAAGCCAGTCGGCAATCGGACGCCTTCGAAACATGCAACA
CTAATGTTTAATTCAGATTTCAGCAGAGACAAGCTAAAACACCGACGAGT
TGTAATCATTCTGTGCGCCAGCATATATTTCTTATATACAACGTAATACA
TAATTATGTAATTCTAGCATCTCCCCAACACTCACATACATACAAACAAA
AAATACAAACACACAAAACGTATTTACCCGCACGCATCCTTGGCGAGGTT
GAGTATGAAACAAAAACAAAACTTAATTTAGAGCAAAGTAATTACACGAA
TAAATTTAATAAAAAAACTATAATAAAAACGCCAAAAAAAAAAAAAAAAA
AAAA

LD21568.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av.b 1289 His2Av.b 111..997 1..885 4355 99.7 Plus
His2Av-RA 1057 His2Av-RA 138..1024 1..885 4355 99.7 Plus
His2Av.a 897 His2Av.a 412..897 400..883 2350 99.5 Plus
His2Av.a 897 His2Av.a 82..413 1..332 1660 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22691482..22692036 331..883 2675 99.6 Plus
chr3R 27901430 chr3R 22690084..22690224 1..141 705 100 Plus
chr3R 27901430 chr3R 22690794..22690912 216..334 595 100 Plus
chr3R 27901430 chr3R 22690536..22690614 140..218 395 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26868354..26868910 331..885 2685 99.6 Plus
3R 32079331 3R 26866956..26867096 1..141 705 100 Plus
3R 32079331 3R 26867666..26867784 216..334 595 100 Plus
3R 32079331 3R 26867408..26867486 140..218 395 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26609185..26609741 331..885 2705 99.6 Plus
3R 31820162 3R 26607787..26607927 1..141 705 100 Plus
3R 31820162 3R 26608497..26608615 216..334 595 100 Plus
3R 31820162 3R 26608239..26608317 140..218 395 100 Plus
Blast to na_te.dros performed 2019-03-16 16:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 714..794 800..879 132 65.9 Plus
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2650..2715 802..865 118 66.7 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 142..175 673..706 116 82.4 Plus

LD21568.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:43 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22690084..22690223 1..140 100 -> Plus
chr3R 22690537..22690614 141..218 100 -> Plus
chr3R 22690797..22690910 219..332 100 -> Plus
chr3R 22691484..22691999 333..847 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:22 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 1..426 138..563 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:53:08 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 1..426 138..563 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:14:33 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 1..426 138..563 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:35:34 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 1..426 138..563 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:30:41 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 1..426 138..563 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:05:12 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 26..910 1..883 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:53:08 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 26..910 1..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:14:33 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 28..912 1..883 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:35:34 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 26..910 1..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:30:41 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 28..912 1..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:43 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26868356..26868908 333..883 99   Plus
3R 26866956..26867095 1..140 100 -> Plus
3R 26867409..26867486 141..218 100 -> Plus
3R 26867669..26867782 219..332 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:43 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26868356..26868908 333..883 99   Plus
3R 26866956..26867095 1..140 100 -> Plus
3R 26867409..26867486 141..218 100 -> Plus
3R 26867669..26867782 219..332 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:43 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26868356..26868908 333..883 99   Plus
3R 26866956..26867095 1..140 100 -> Plus
3R 26867409..26867486 141..218 100 -> Plus
3R 26867669..26867782 219..332 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:14:33 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22692678..22692817 1..140 100 -> Plus
arm_3R 22693131..22693208 141..218 100 -> Plus
arm_3R 22693391..22693504 219..332 100 -> Plus
arm_3R 22694078..22694630 333..883 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:18:01 Download gff for LD21568.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26609187..26609739 333..883 99   Plus
3R 26607787..26607926 1..140 100 -> Plus
3R 26608240..26608317 141..218 100 -> Plus
3R 26608500..26608613 219..332 100 -> Plus

LD21568.hyp Sequence

Translation from 137 to 562

> LD21568.hyp
MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGAT
AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL
IKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNVILSQAY*

LD21568.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-PB 141 CG5499-PB 1..141 1..141 699 100 Plus
His2Av-PA 141 CG5499-PA 1..141 1..141 699 100 Plus
His2A:CG33865-PA 124 CG33865-PA 5..121 4..124 329 63.1 Plus
His2A:CG33862-PA 124 CG33862-PA 5..121 4..124 329 63.1 Plus
His2A:CG33859-PA 124 CG33859-PA 5..121 4..124 329 63.1 Plus

LD21568.pep Sequence

Translation from 137 to 562

> LD21568.pep
MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGAT
AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL
IKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNVILSQAY*

LD21568.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16458-PA 141 GF16458-PA 1..141 1..141 715 100 Plus
Dana\GF20259-PA 182 GF20259-PA 32..156 8..130 463 72.8 Plus
Dana\GF24586-PA 126 GF24586-PA 1..122 1..125 329 59.1 Plus
Dana\GF15886-PA 124 GF15886-PA 16..121 19..124 322 64.5 Plus
Dana\GF21515-PA 124 GF21515-PA 16..121 19..124 322 64.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11506-PA 141 GG11506-PA 1..141 1..141 711 99.3 Plus
Dere\GG13013-PA 124 GG13013-PA 16..121 19..124 325 64.5 Plus
Dere\GG21312-PA 124 GG21312-PA 16..121 19..124 322 64.5 Plus
Dere\GG18133-PA 124 GG18133-PA 16..121 19..124 322 64.5 Plus
Dere\GG21305-PA 124 GG21305-PA 16..121 19..124 322 64.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10352-PA 152 GH10352-PA 13..152 2..141 704 99.3 Plus
Dgri\GH23505-PA 124 GH23505-PA 14..121 17..124 323 64.2 Plus
Dgri\GH23503-PA 124 GH23503-PA 14..121 17..124 323 64.2 Plus
Dgri\GH25186-PA 124 GH25186-PA 16..121 19..124 322 64.5 Plus
Dgri\GH25184-PA 124 GH25184-PA 16..121 19..124 322 64.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-PB 141 CG5499-PB 1..141 1..141 699 100 Plus
His2Av-PA 141 CG5499-PA 1..141 1..141 699 100 Plus
His2A:CG33865-PA 124 CG33865-PA 5..121 4..124 329 63.1 Plus
His2A:CG33862-PA 124 CG33862-PA 5..121 4..124 329 63.1 Plus
His2A:CG33859-PA 124 CG33859-PA 5..121 4..124 329 63.1 Plus
His2A:CG33856-PA 124 CG33856-PA 5..121 4..124 329 63.1 Plus
His2A:CG33853-PA 124 CG33853-PA 5..121 4..124 329 63.1 Plus
His2A:CG33850-PA 124 CG33850-PA 5..121 4..124 329 63.1 Plus
His2A:CG33847-PA 124 CG33847-PA 5..121 4..124 329 63.1 Plus
His2A:CG33844-PA 124 CG33844-PA 5..121 4..124 329 63.1 Plus
His2A:CG33841-PA 124 CG33841-PA 5..121 4..124 329 63.1 Plus
His2A:CG33838-PA 124 CG33838-PA 5..121 4..124 329 63.1 Plus
His2A:CG33835-PA 124 CG33835-PA 5..121 4..124 329 63.1 Plus
His2A:CG33832-PA 124 CG33832-PA 5..121 4..124 329 63.1 Plus
His2A:CG33829-PA 124 CG33829-PA 5..121 4..124 329 63.1 Plus
His2A:CG33826-PA 124 CG33826-PA 5..121 4..124 329 63.1 Plus
His2A:CG33823-PA 124 CG33823-PA 5..121 4..124 329 63.1 Plus
His2A:CG33820-PA 124 CG33820-PA 5..121 4..124 329 63.1 Plus
His2A:CG33817-PA 124 CG33817-PA 5..121 4..124 329 63.1 Plus
His2A:CG33814-PA 124 CG33814-PA 5..121 4..124 329 63.1 Plus
His2A:CG33808-PA 124 CG33808-PA 5..121 4..124 329 63.1 Plus
His2A:CG31618-PA 124 CG31618-PA 5..121 4..124 329 63.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23052-PA 152 GI23052-PA 13..152 2..141 702 98.6 Plus
Dmoj\GI16892-PA 124 GI16892-PA 16..121 19..124 322 64.5 Plus
Dmoj\GI23445-PA 124 GI23445-PA 16..121 19..124 322 64.5 Plus
Dmoj\GI23441-PA 124 GI23441-PA 16..121 19..124 322 64.5 Plus
Dmoj\GI17254-PA 124 GI17254-PA 16..121 19..124 322 64.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27227-PA 141 GL27227-PA 1..141 1..141 711 99.3 Plus
Dper\GL23963-PA 124 GL23963-PA 16..121 19..124 322 64.5 Plus
Dper\GL23960-PA 124 GL23960-PA 16..121 19..124 322 64.5 Plus
Dper\GL23957-PA 124 GL23957-PA 16..121 19..124 322 64.5 Plus
Dper\GL23953-PA 124 GL23953-PA 16..121 19..124 322 64.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18930-PA 141 GA18930-PA 1..141 1..141 711 99.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10348-PA 141 GM10348-PA 1..141 1..141 715 100 Plus
Dsec\GM13182-PA 124 GM13182-PA 7..121 10..124 345 64.7 Plus
Dsec\GM16110-PA 124 GM16110-PA 16..121 19..124 325 64.5 Plus
Dsec\GM13581-PA 124 GM13581-PA 16..121 19..124 322 64.5 Plus
Dsec\GM12072-PA 124 GM12072-PA 16..121 19..124 322 64.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21310-PA 141 GD21310-PA 1..141 1..141 715 100 Plus
Dsim\GD12842-PA 124 GD12842-PA 5..121 7..124 345 64.7 Plus
Dsim\GD20626-PA 124 GD20626-PA 16..121 19..124 322 64.5 Plus
Dsim\GD20328-PA 124 GD20328-PA 16..121 19..124 322 64.5 Plus
Dsim\GD24267-PA 124 GD24267-PA 16..121 19..124 322 64.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15170-PA 140 GJ15170-PA 1..140 2..141 704 99.3 Plus
Dvir\GJ14581-PA 124 GJ14581-PA 16..121 19..124 322 64.5 Plus
Dvir\GJ16341-PA 124 GJ16341-PA 16..121 19..124 322 64.5 Plus
Dvir\GJ23706-PA 124 GJ23706-PA 16..121 19..124 322 64.5 Plus
Dvir\GJ19813-PA 124 GJ19813-PA 16..121 19..124 322 64.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13546-PA 159 GK13546-PA 19..159 1..141 699 97.9 Plus
Dwil\GK23626-PA 124 GK23626-PA 16..121 19..124 322 64.5 Plus
Dwil\GK10382-PA 124 GK10382-PA 16..121 19..124 322 64.5 Plus
Dwil\GK18500-PA 124 GK18500-PA 16..121 19..124 322 64.5 Plus
Dwil\GK18709-PA 124 GK18709-PA 16..119 19..122 318 64.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23696-PA 141 GE23696-PA 1..141 1..141 711 99.3 Plus
Dyak\GE15127-PA 124 GE15127-PA 16..121 19..124 322 64.5 Plus
Dyak\GE14578-PA 124 GE14578-PA 16..121 19..124 322 64.5 Plus
Dyak\GE15142-PA 124 GE15142-PA 16..121 19..124 315 63.6 Plus
Dyak\GE14574-PA 70 GE14574-PA 1..67 59..124 207 64.2 Plus