BDGP Sequence Production Resources |
Search the DGRC for LD21576
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 215 |
Well: | 76 |
Vector: | pOT2 |
Associated Gene/Transcript | Nap1-RA |
Protein status: | LD21576.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1326 |
Gene | Date | Evidence |
---|---|---|
CG5330 | 2001-01-01 | Release 2 assignment |
CG5330 | 2002-07-13 | Blastp of sequenced clone |
CG5330 | 2003-01-01 | Sim4 clustering to Release 3 |
Nap1 | 2008-04-29 | Release 5.5 accounting |
Nap1 | 2008-08-15 | Release 5.9 accounting |
Nap1 | 2008-12-18 | 5.12 accounting |
1326 bp (1326 high quality bases) assembled on 2002-07-13
GenBank Submission: BT001479
> LD21576.complete GGCGGTGCTCATCGTGCGTCTGTTCTAACCGAAGTGAGATCAGCATTTAT TGAACAATGGACGCCCCAGCCGAAGGACACGTTGACCCCGAGTCCTGCAA CGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCGATGCCCGCCT ACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAATGGTCAAGATG CTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAAACCTACAGCT GCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTCTACAAGCTGG AGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAAGCGCAGGGAG ATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCCAGTGGAAGGA ACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCACTTCCGCGAGG CCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGGCATTCCCGGC TTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTGAGATGGTGCA GCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATTTCCATCAAGT ACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGACAAGAACGAG TACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGAAGTCCACCGT GGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATCTACAAGTGCA CGGGGTGCACCATTAACTGGGAGAAGAAGATGAACCTTACTGTGAAGACC ATCCGCAAGAAGCAGAAGCACAAGGAGCGCGGCGCAGTGCGCACCATTGT GAAGCAGGTTCCGACGGATTCCTTCTTCAATTTCTTCAGCCCACCAGAGG TCCCGAGCGACCAGGAGGAAGTCGACGACGACTCCCAGCAGATCCTGGCC ACCGACTTCGAAATTGGTCACTTCTTGCGCGCCAGAATTATTCCAAAAGC AGTGCTTTACTACACTGGCGACATCGTCGACGATGAGGACGATGAGGACG AAGAGGAGTATGACGAGAACGAGGAGGATGAGTACGACGACGACGATGCA CCGCCACCAAAGGGCCCCAAATCAGCCGGTATCAAGAAGCAGTCGCCCAA CGACTGCCCGAATCAGTAGGTTGATGTGGCTGGATTACACATGTGTAATG TATATACATAATTCAAATTTGATTTGAAATATATTTTTGGTGAATAAAAA TAAAAACAACAATTACAAACGATATGAGCTGAACTCGAATAAACCTACAT GATATTAGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19792103..19792571 | 611..143 | 2345 | 100 | Minus |
chr2R | 21145070 | chr2R | 19791218..19791588 | 1308..938 | 1855 | 100 | Minus |
chr2R | 21145070 | chr2R | 19791648..19791837 | 941..752 | 950 | 100 | Minus |
chr2R | 21145070 | chr2R | 19791898..19792040 | 753..611 | 700 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 19792657..19792767 | 143..33 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23906060..23906528 | 611..143 | 2345 | 100 | Minus |
2R | 25286936 | 2R | 23905173..23905545 | 1310..938 | 1865 | 100 | Minus |
2R | 25286936 | 2R | 23905605..23905794 | 941..752 | 950 | 100 | Minus |
2R | 25286936 | 2R | 23905855..23905997 | 753..611 | 715 | 100 | Minus |
2R | 25286936 | 2R | 23906614..23906724 | 143..33 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23907259..23907727 | 611..143 | 2345 | 100 | Minus |
2R | 25260384 | 2R | 23906372..23906744 | 1310..938 | 1865 | 100 | Minus |
2R | 25260384 | 2R | 23906804..23906993 | 941..752 | 950 | 100 | Minus |
2R | 25260384 | 2R | 23907054..23907196 | 753..611 | 715 | 100 | Minus |
2R | 25260384 | 2R | 23907813..23907923 | 143..33 | 555 | 100 | Minus |
2R | 25260384 | 2R | 23908407..23908440 | 34..1 | 170 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1119..1205 | 1215..1302 | 113 | 60.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19791899..19792039 | 612..752 | 99 | <- | Minus |
chr2R | 19791218..19791427 | 1099..1308 | 100 | == | Minus |
chr2R | 19791510..19791584 | 942..1016 | 100 | <- | Minus |
chr2R | 19791648..19791836 | 753..941 | 100 | <- | Minus |
chr2R | 19792103..19792571 | 143..611 | 100 | <- | Minus |
chr2R | 19792658..19792765 | 35..142 | 100 | <- | Minus |
chr2R | 19793251..19793284 | 1..34 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 1..1113 | 57..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 1..1113 | 57..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 1..1113 | 57..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 1..1113 | 57..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 1..1113 | 57..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 74..1381 | 1..1308 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 74..1381 | 1..1308 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 54..1361 | 1..1308 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 74..1381 | 1..1308 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nap1-RA | 54..1361 | 1..1308 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23905856..23905996 | 612..752 | 100 | <- | Minus |
2R | 23905175..23905541 | 942..1308 | 100 | <- | Minus |
2R | 23905605..23905793 | 753..941 | 100 | <- | Minus |
2R | 23906060..23906528 | 143..611 | 100 | <- | Minus |
2R | 23906615..23906722 | 35..142 | 100 | <- | Minus |
2R | 23907208..23907241 | 1..34 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23905856..23905996 | 612..752 | 100 | <- | Minus |
2R | 23905175..23905541 | 942..1308 | 100 | <- | Minus |
2R | 23905605..23905793 | 753..941 | 100 | <- | Minus |
2R | 23906060..23906528 | 143..611 | 100 | <- | Minus |
2R | 23906615..23906722 | 35..142 | 100 | <- | Minus |
2R | 23907208..23907241 | 1..34 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23905856..23905996 | 612..752 | 100 | <- | Minus |
2R | 23905175..23905541 | 942..1308 | 100 | <- | Minus |
2R | 23905605..23905793 | 753..941 | 100 | <- | Minus |
2R | 23906060..23906528 | 143..611 | 100 | <- | Minus |
2R | 23906615..23906722 | 35..142 | 100 | <- | Minus |
2R | 23907208..23907241 | 1..34 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19792698..19793064 | 942..1308 | 100 | <- | Minus |
arm_2R | 19793128..19793316 | 753..941 | 100 | <- | Minus |
arm_2R | 19793379..19793519 | 612..752 | 100 | <- | Minus |
arm_2R | 19793583..19794051 | 143..611 | 100 | <- | Minus |
arm_2R | 19794138..19794245 | 35..142 | 100 | <- | Minus |
arm_2R | 19794731..19794764 | 1..34 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23907073..23907213 | 612..752 | 100 | <- | Minus |
2R | 23906392..23906758 | 942..1308 | 100 | <- | Minus |
2R | 23906822..23907010 | 753..941 | 100 | <- | Minus |
2R | 23907277..23907745 | 143..611 | 100 | <- | Minus |
2R | 23907832..23907939 | 35..142 | 100 | <- | Minus |
2R | 23908425..23908458 | 1..34 | 100 | Minus |
Translation from 56 to 1168
> LD21576.pep MDAPAEGHVDPESCNEIEDEKSGSDCQSMPAYMNSVMRRQYLQQMVKMLP APVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFDKRREII EGKVDPAEEKPQWKEPESSTDNEADAEHFREALSSLKSIPKDAKGIPGFW LTVFRNTAIMSEMVQPHDEPAIRKLIDISIKYDNGHSYTLEFHFDKNEYF SNSVLTKQYVLKSTVDPNDPFAFEGPEIYKCTGCTINWEKKMNLTVKTIR KKQKHKERGAVRTIVKQVPTDSFFNFFSPPEVPSDQEEVDDDSQQILATD FEIGHFLRARIIPKAVLYYTGDIVDDEDDEDEEEYDENEEDEYDDDDAPP PKGPKSAGIKKQSPNDCPNQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12054-PA | 369 | GF12054-PA | 1..369 | 1..370 | 1503 | 81.4 | Plus |
Dana\GF22051-PA | 365 | GF22051-PA | 51..343 | 30..326 | 636 | 42.3 | Plus |
Dana\GF16306-PA | 291 | GF16306-PA | 39..258 | 60..325 | 368 | 32.7 | Plus |
Dana\GF11410-PA | 273 | GF11410-PA | 56..230 | 76..319 | 151 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19979-PA | 369 | GG19979-PA | 1..369 | 1..370 | 1704 | 92.7 | Plus |
Dere\GG12732-PA | 362 | GG12732-PA | 46..340 | 30..325 | 610 | 41.6 | Plus |
Dere\GG11578-PA | 289 | GG11578-PA | 36..259 | 57..325 | 401 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20189-PA | 369 | GH20189-PA | 1..369 | 1..370 | 1439 | 76 | Plus |
Dgri\GH12416-PA | 390 | GH12416-PA | 45..352 | 21..330 | 695 | 43.8 | Plus |
Dgri\GH16575-PA | 290 | GH16575-PA | 38..266 | 60..336 | 393 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nap1-PC | 370 | CG5330-PC | 1..370 | 1..370 | 1974 | 100 | Plus |
Nap1-PB | 370 | CG5330-PB | 1..370 | 1..370 | 1974 | 100 | Plus |
Nap1-PA | 370 | CG5330-PA | 1..370 | 1..370 | 1974 | 100 | Plus |
CG3708-PB | 362 | CG3708-PB | 46..340 | 30..325 | 602 | 40.9 | Plus |
mil-PA | 283 | CG5017-PA | 37..277 | 60..347 | 425 | 33.7 | Plus |
Set-PA | 269 | CG4299-PA | 42..259 | 64..353 | 206 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18847-PA | 365 | GI18847-PA | 1..365 | 1..370 | 1404 | 74.1 | Plus |
Dmoj\Tes129-PA | 390 | GI15001-PA | 56..354 | 30..330 | 695 | 44.4 | Plus |
Dmoj\GI22030-PA | 289 | GI22030-PA | 39..255 | 60..325 | 353 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10917-PA | 372 | GL10917-PA | 1..372 | 1..370 | 1538 | 82.3 | Plus |
Dper\GL14420-PA | 376 | GL14420-PA | 41..343 | 20..329 | 667 | 41.4 | Plus |
Dper\GL12969-PA | 242 | GL12969-PA | 6..205 | 77..325 | 336 | 31.9 | Plus |
Dper\GL13720-PA | 270 | GL13720-PA | 37..237 | 57..325 | 294 | 28.8 | Plus |
Dper\GL12968-PA | 350 | GL12968-PA | 32..252 | 60..323 | 232 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18808-PA | 372 | GA18808-PA | 1..372 | 1..370 | 1538 | 82.3 | Plus |
Dpse\GA17630-PA | 376 | GA17630-PA | 34..343 | 12..329 | 663 | 40.2 | Plus |
Dpse\GA23030-PA | 288 | GA23030-PA | 27..255 | 48..325 | 368 | 32.9 | Plus |
Dpse\GA27003-PB | 242 | GA27003-PB | 37..242 | 57..310 | 294 | 30.4 | Plus |
Dpse\GA23025-PA | 332 | GA23025-PA | 32..252 | 60..323 | 220 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15492-PA | 370 | GM15492-PA | 1..370 | 1..370 | 1931 | 97.3 | Plus |
Dsec\GM19012-PA | 362 | GM19012-PA | 46..340 | 30..325 | 623 | 41.3 | Plus |
Dsec\GM16360-PA | 283 | GM16360-PA | 34..255 | 57..325 | 385 | 33.5 | Plus |
Dsec\GM11702-PA | 164 | GM11702-PA | 17..136 | 188..325 | 290 | 41.7 | Plus |
Dsec\GM15493-PA | 113 | GM15493-PA | 21..106 | 233..361 | 174 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24995-PA | 370 | GD24995-PA | 1..370 | 1..370 | 1937 | 97.8 | Plus |
Dsim\GD21354-PA | 283 | GD21354-PA | 37..255 | 60..325 | 374 | 33.1 | Plus |
Dsim\GD15341-PA | 79 | GD15341-PA | 1..57 | 268..325 | 156 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20453-PA | 367 | GJ20453-PA | 1..367 | 1..370 | 1446 | 76.5 | Plus |
Dvir\GJ15359-PA | 399 | GJ15359-PA | 64..362 | 30..330 | 701 | 45.7 | Plus |
Dvir\GJ10476-PA | 288 | GJ10476-PA | 39..255 | 60..325 | 360 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15855-PA | 369 | GK15855-PA | 1..369 | 1..370 | 1397 | 75.5 | Plus |
Dwil\GK10174-PA | 360 | GK10174-PA | 42..346 | 24..330 | 672 | 43.9 | Plus |
Dwil\GK11772-PA | 290 | GK11772-PA | 42..258 | 60..325 | 373 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Nap1-PA | 371 | GE11512-PA | 1..371 | 1..370 | 1734 | 94.1 | Plus |
Dyak\GE23767-PA | 290 | GE23767-PA | 37..260 | 57..325 | 397 | 34.9 | Plus |
Dyak\GE16558-PA | 123 | GE16558-PA | 37..122 | 11..103 | 165 | 40.9 | Plus |
Translation from 56 to 1168
> LD21576.hyp MDAPAEGHVDPESCNEIEDEKSGSDCQSMPAYMNSVMRRQYLQQMVKMLP APVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFDKRREII EGKVDPAEEKPQWKEPESSTDNEADAEHFREALSSLKSIPKDAKGIPGFW LTVFRNTAIMSEMVQPHDEPAIRKLIDISIKYDNGHSYTLEFHFDKNEYF SNSVLTKQYVLKSTVDPNDPFAFEGPEIYKCTGCTINWEKKMNLTVKTIR KKQKHKERGAVRTIVKQVPTDSFFNFFSPPEVPSDQEEVDDDSQQILATD FEIGHFLRARIIPKAVLYYTGDIVDDEDDEDEEEYDENEEDEYDDDDAPP PKGPKSAGIKKQSPNDCPNQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nap1-PC | 370 | CG5330-PC | 1..370 | 1..370 | 1974 | 100 | Plus |
Nap1-PB | 370 | CG5330-PB | 1..370 | 1..370 | 1974 | 100 | Plus |
Nap1-PA | 370 | CG5330-PA | 1..370 | 1..370 | 1974 | 100 | Plus |
CG3708-PB | 362 | CG3708-PB | 46..340 | 30..325 | 602 | 40.9 | Plus |
mil-PA | 283 | CG5017-PA | 37..277 | 60..347 | 425 | 33.7 | Plus |