BDGP Sequence Production Resources |
Search the DGRC for LD21601
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 216 |
Well: | 1 |
Vector: | pOT2 |
Associated Gene/Transcript | alphaSnap-RA |
Protein status: | LD21601.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 2054 |
Gene | Date | Evidence |
---|---|---|
CG6625 | 2001-01-01 | Release 2 assignment |
CG6625 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6625 | 2003-01-14 | Blastp of sequenced clone |
Snap | 2008-04-29 | Release 5.5 accounting |
Snap | 2008-08-15 | Release 5.9 accounting |
Snap | 2008-12-18 | 5.12 accounting |
2054 bp (2054 high quality bases) assembled on 2003-01-14
GenBank Submission: AY069477
> LD21601.complete CACCAAGTCAGCATATTGATTTTATTTTCTCGAAAAAAGATCCCAATACG TACACACACTCGCTGAAAAGCCGAACAAGTCTTAAACTTAGATGCAATTA GTGCCGAGGCGGACATAAATCCTCGACATGGGTGACAACGAACAGAAGGC GCTCCAGCTGATGGCCGAGGCGGAGAAGAAGTTGACCCAGCAGAAGGGCT TTCTGGGATCGCTGTTCGGAGGGTCCAACAAGGTGGAGGACGCCATCGAG TGCTACCAGCGGGCGGGCAACATGTTTAAGATGTCCAAAAACTGGACAAA GGCTGGGGAGTGCTTCTGCGAGGCGGCAACTCTACACGCGCGGGCTGGAA GTCGTCACGATGCCGGAACCTGCTACGTAGACGCTTCCAACTGCTACAAG AAGGTGGACGTGGAGAGCGCCGTCAACTGCCTGATGAAGTCCATCGACAT CTACACGGATATGGGCCGCTTTACGATGGCTGCCAAACATCACCAAAGCA TCGCCGAGATGTACGAAAGTGATCCCAATAATCTGGCCAAGTCTATTCAG CACTATGAGCAGGCGGCTGATTACTTCAAGGGTGAAGAGTCGGTCAGTTC GGCCAACAAGTGCATGTTGAAGGTGGCCCAGTACGCCGCCCAACTGGAGG ATTACGAGAAAGCAATATCCATATACGAGCAGGTGGCCGCCTCCTCGCTG GAGAGCTCTCTGCTCAAGTACAGTGCCAAGGAGTACTTCTTCAGGGCCGC TCTATGCCATCTCAGCGTGGACCTCCTGAACGCCCAGCATGCCATCGAAA AGTATGCGCAGCAGTACCCAGCATTCCAGGACTCCAGGGAGTTCAAGCTC ATCAAGGTGTTGTGCGAGAATCTAGAGGAACAGAACATCGAGGGATTCAC AGAGGCCGTCAAGGACTACGACAGCATCTCCCGGTTGGATCAGTGGTACA CCACCATCTTGCTGCGGATCAAGAAGGCTGCGGACGAGGATCCCGATCTG CGATAAACGAAATCAATTAAATTTTCGGATAAAATCGCGTACACATTTAT TAAATGCTTTATTCGGTTCGGATATTAATCTACCTATACATATATAACTA AAAGAAAATTATTAAACGTGTTGCATTGCTTAACCTGAAAGCACCCAAAC GACGGCCAGCTTGTACGCGTGAATTAAACCTATGGAATAGTCTATATTCC CGTATTCTAGAGTTTAATTTAACGTTTATGCAACGAATGAAGAAGGCAGC AGATGCCGAGGCTCAAATTGCGCTACCACGTGCTATTCAAAAGAAAAACT TTATTATTTCCAATGTGGAGTGATTAGAGGTGTTACTTATGTTTGTCTGT TTTTGCGTTACTCTTGTTATTTGTGTAAGTAGCCAATCAATCAGTGGGTT AGCTGATGTTCCATTTGGATGCGTAAAGTACCCTATAGAAATCTGTATCC ACTACTATAATAAATTGAGAACTTCATTCTATGTGTGTAATGTGTTAGAT AATTTTGAGATTAACTAAAGAGTCCCTGGTAGCGAAAATGAATTTCAAAC CAATTATAATTCCATTTAGTGCACTGAAATAAAATTAAACCTAAAGTTTA GATTGTACGCATATACACAACCTACAAATAAAATATATGTCCACATAAAC ATTACCGATTACCCCGATAAATATCCAAAAAGTACACGGAATTCTAATAA ATACTTGAGGGTCACATTTATAGAAAATTCCATCTCGCAAAATTTTAACG ATGTTTAGTAGATCAACATGTACGAGCGAATTATAATCCAATAAATAATA TTACGACGGAGCGACGAAGATTACGCGGTCGTCGAGGCCGAAGCAAGAAT AAATAAATCAATTATTGAATTTATTGAATGAAGATCTCCAGGAAACACAC AACACCACTGAAACCTGACCCAACACATTTAATTATTAATACTGCAAAGA TCCTGGTAATGCCTCTATGCAAGCGTTACCACGGATATTTCCAATTCAAA TACTTTAATAAAGTTAACGCTTGGATTAATCCTGTCAAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20304501..20305682 | 855..2036 | 5850 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 20304087..20304411 | 535..859 | 1625 | 100 | Plus |
chr3L | 24539361 | chr3L | 20303712..20304029 | 219..536 | 1590 | 100 | Plus |
chr3L | 24539361 | chr3L | 20302771..20302989 | 1..219 | 1065 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20315396..20316578 | 855..2037 | 5915 | 100 | Plus |
3L | 28110227 | 3L | 20314982..20315306 | 535..859 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 20314607..20314924 | 219..536 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 20313666..20313884 | 1..219 | 1095 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20308496..20309678 | 855..2037 | 5915 | 100 | Plus |
3L | 28103327 | 3L | 20308082..20308406 | 535..859 | 1625 | 100 | Plus |
3L | 28103327 | 3L | 20307707..20308024 | 219..536 | 1590 | 100 | Plus |
3L | 28103327 | 3L | 20306766..20306984 | 1..219 | 1095 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6823..6947 | 1608..1732 | 129 | 57.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20303713..20304028 | 220..535 | 100 | -> | Plus |
chr3L | 20304088..20304408 | 536..856 | 100 | -> | Plus |
chr3L | 20302771..20302989 | 1..219 | 99 | -> | Plus |
chr3L | 20304503..20305682 | 857..2036 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap-RA | 1..879 | 128..1006 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap-RA | 1..879 | 128..1006 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap-RA | 1..879 | 128..1006 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap-RA | 1..879 | 128..1006 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alphaSnap-RA | 1..879 | 128..1006 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap-RA | 33..2068 | 1..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap-RA | 33..2068 | 1..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap-RA | 35..2070 | 1..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap-RA | 33..2068 | 1..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
alphaSnap-RA | 35..2070 | 1..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20313666..20313884 | 1..219 | 100 | -> | Plus |
3L | 20314608..20314923 | 220..535 | 100 | -> | Plus |
3L | 20314983..20315303 | 536..856 | 100 | -> | Plus |
3L | 20315398..20316577 | 857..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20313666..20313884 | 1..219 | 100 | -> | Plus |
3L | 20314608..20314923 | 220..535 | 100 | -> | Plus |
3L | 20314983..20315303 | 536..856 | 100 | -> | Plus |
3L | 20315398..20316577 | 857..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20313666..20313884 | 1..219 | 100 | -> | Plus |
3L | 20314608..20314923 | 220..535 | 100 | -> | Plus |
3L | 20314983..20315303 | 536..856 | 100 | -> | Plus |
3L | 20315398..20316577 | 857..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20308083..20308403 | 536..856 | 100 | -> | Plus |
arm_3L | 20306766..20306984 | 1..219 | 100 | -> | Plus |
arm_3L | 20307708..20308023 | 220..535 | 100 | -> | Plus |
arm_3L | 20308498..20309677 | 857..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20306766..20306984 | 1..219 | 100 | -> | Plus |
3L | 20307708..20308023 | 220..535 | 100 | -> | Plus |
3L | 20308083..20308403 | 536..856 | 100 | -> | Plus |
3L | 20308498..20309677 | 857..2036 | 100 | Plus |
Translation from 127 to 1005
> LD21601.pep MGDNEQKALQLMAEAEKKLTQQKGFLGSLFGGSNKVEDAIECYQRAGNMF KMSKNWTKAGECFCEAATLHARAGSRHDAGTCYVDASNCYKKVDVESAVN CLMKSIDIYTDMGRFTMAAKHHQSIAEMYESDPNNLAKSIQHYEQAADYF KGEESVSSANKCMLKVAQYAAQLEDYEKAISIYEQVAASSLESSLLKYSA KEYFFRAALCHLSVDLLNAQHAIEKYAQQYPAFQDSREFKLIKVLCENLE EQNIEGFTEAVKDYDSISRLDQWYTTILLRIKKAADEDPDLR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10051-PA | 292 | GF10051-PA | 1..292 | 1..292 | 1538 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16100-PA | 292 | GG16100-PA | 1..292 | 1..292 | 1549 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14381-PA | 292 | GH14381-PA | 1..292 | 1..292 | 1531 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
alphaSnap-PA | 292 | CG6625-PA | 1..292 | 1..292 | 1513 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11324-PA | 262 | GI11324-PA | 1..262 | 1..292 | 1328 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25130-PA | 293 | GL25130-PA | 1..293 | 1..292 | 1432 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19734-PA | 293 | GA19734-PA | 1..293 | 1..292 | 1432 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22271-PA | 292 | GM22271-PA | 1..292 | 1..292 | 1545 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14872-PA | 292 | GD14872-PA | 1..292 | 1..292 | 1545 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11580-PA | 292 | GJ11580-PA | 1..292 | 1..292 | 1529 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16949-PA | 302 | GK16949-PA | 1..289 | 1..289 | 1493 | 96.9 | Plus |
Translation from 127 to 1005
> LD21601.hyp MGDNEQKALQLMAEAEKKLTQQKGFLGSLFGGSNKVEDAIECYQRAGNMF KMSKNWTKAGECFCEAATLHARAGSRHDAGTCYVDASNCYKKVDVESAVN CLMKSIDIYTDMGRFTMAAKHHQSIAEMYESDPNNLAKSIQHYEQAADYF KGEESVSSANKCMLKVAQYAAQLEDYEKAISIYEQVAASSLESSLLKYSA KEYFFRAALCHLSVDLLNAQHAIEKYAQQYPAFQDSREFKLIKVLCENLE EQNIEGFTEAVKDYDSISRLDQWYTTILLRIKKAADEDPDLR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
alphaSnap-PA | 292 | CG6625-PA | 1..292 | 1..292 | 1513 | 100 | Plus |