Clone LD21606 Report

Search the DGRC for LD21606

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:6
Vector:pOT2
Associated Gene/TranscriptCG9114-RA
Protein status:LD21606.pep: gold
Preliminary Size:2200
Sequenced Size:2151

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9114 2001-01-01 Release 2 assignment
CG9114 2001-09-19 Blastp of sequenced clone
CG9114 2003-01-01 Sim4 clustering to Release 3
CG9114 2008-04-29 Release 5.5 accounting
CG9114 2008-08-15 Release 5.9 accounting
CG9114 2008-12-18 5.12 accounting

Clone Sequence Records

LD21606.complete Sequence

2151 bp (2151 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058509

> LD21606.complete
CCACATCCATCTTGTGGCTTCCGCATCCATGCTGCCGTTTGTCCAGGAGA
ATGTGCCGGAGATGCTGCTCCAGCCGGCCCGGTTGGCCTTCTGCGCCAAT
CTTCACGTGGGCCGACCGCGGGATGACCCCACTACATTGGTTTTAGCGAG
AAACCTAAAGTTCTACGAATTCCGGCGCAAGGATCTGGTGCACTACATCG
ATTTGAAGGTCACGAAACTAAAGCAAATAGCCACCCAACTGGAGGCCTAC
GACGGACCGGTTTGTCCCTTTCTGTCCAAGCAGGAACCCACTGACGAAAA
GGTGGACTGGAGCATGCTGGATCCGCCGGAGGATTTGCCCCTCAAATTTG
GAAAGTTTGTGTGGCAACGGGAGGGCATCTACCTGTTAATTCAGTGCTGG
AAGCATCTCGTCGTCCTAAAGAGGCCCAAGGATCACGGGGCCAACTTCGA
ACTGGTGGCGGATCACAAGGATGTGGTGGACTACCAGATGGTCGAAGGTC
CCATTTCCTTCCAGGCCGTTGTGGAACTGGAGTTCGGCAATGGCAAGCGT
CAGCGTTGTGATTTCCAGGAGGATTTCTTAAATGAGGAGCCCAGCACGTC
CAAAAATGCGGGCTTGCCCGCGAAGGATTTCGAGAACCTGCTGCAGGAGG
TGCACCGCGCCCAAGCCGAGCTCGACAGCCAGCGAATGCAAAACCAGAAG
GAATTAGCCCACGTCCAAGACCTTCTATACTTCGGCACGCCGGGCCAGCG
TTCGCTGCTCCTTGAGGAGAAGCAGCCGCTCCGACGACTCGGCGATGTAT
GGACTCGGATCTGCGGCGATTATTTTGTTTGTGGCACTCTGCTAGTCAAC
ATAACTGGCACCAATCGCCTCACCATAGTCAAGGAGTTGTATCCGATTGT
TGTAATCGAACCACACACCGACTTTAGCGTGGAGCACCGCCTGTACGAGC
TGCCTCTGCAGGCGGATGGCCAACCACCCGAGGACTACGACCAGCTGGCG
CAGTTTTGGGCCTGCCAGGATCAGCATAGCAGGCGTCTCAAATGGCGACC
GGTGGAGAAGGAAAGAATACTACCGCCGGAACGATCTGCCGCGATGGTAG
TGAGCCTGCGTCTGGTCGATCTTCTTGAGGCAGAGAAACTCATATTGATG
GCAACGTACGAGATGGGCGAGGATGCATCCCCTAGGCAAATCCATCTCAT
TACCTTCGATGTGAAGAAACTGCTCGATAAAACAGAATCGTTGGCACCCA
CATTTTCGCCCGCCACGCTGCACCAAGACTTTTTGGCCGTTATTATGACG
CACACGGCACGTTGCTCCCTGAAATTGGAGTTCCAGTCGGCCCAGGATTG
CACGACATTCGAGCAGCTACTCGTCTCCACGCTGCAGTTTCAGTTGATCC
AAGCCCAGGAAGCAAACAAGGAGCCGACTTCCGACTTGCTGGACGACAGT
GAGCCTGGGTCTCACTTTCAGTCTTCCAACATCGCCGCCGATCCTGTCCA
GCGTATTTTCTACAATCGCCAGCCGCAGTCACAGTGGTGTGACACCTTGC
TGCTTCGCGACGATCCCGGAAAGCATTGGCATGTGTACGCCAGAACGGAC
GATCGATTGCGTCTGCTACTGCATCGCCTGACGCGCGATCTCCTCCAGCT
GCACTGCAACCTCAATGTGCTAGAGGTCGCTGAGCACAACATGTCGCCTG
CCGACATGGAGATGGAGTTGCTAAACAGTCTGTTCGAGGAGATGGACGCC
TGGAAGGTTTTGAGTGAGCCGGCAGCCAGTGTGGAGCAGCGCCGGGAGCA
GCTGACGCAGCTCCACAAGGCACAAATGGCCAGCGATGTGTTGGCTTCTA
TGCTATTCACCGATGATGATGATGACAATGGGGCGTAAATGCGTTTTTTT
TTTCTTCTCTTTGCATTGGAAAATCTACAAAGTTGATATTTTGTATGTAA
ATGCTTTGTTAACAATGTGTTTTTTGCATTGTATATTTTTATAAAAACAT
TTTGTTGTATTGCATTCTTGTCAGAGTTGTAAGTTTACAAATTAAAGCAT
TTACGCGAATGTTAAAGCACATGGGAAAAGGAAGAAGGATATAATAAATG
CATGACTCGGTTGTGTCATTTTGTCACGATTAAAAAAAAAAAAAAAAAAA
A

LD21606.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9114-RA 3060 CG9114-RA 525..2656 1..2132 10660 100 Plus
dah.a 2207 dah.a 1988..2207 2132..1913 1100 100 Minus
dah.b 2345 dah.b 2126..2345 2132..1913 1100 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15221481..15222907 1427..1 7060 99.6 Minus
chrX 22417052 chrX 15220718..15221424 2131..1428 3440 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15331544..15332970 1427..1 7135 100 Minus
X 23542271 X 15330783..15331487 2132..1428 3525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15339642..15341068 1427..1 7135 100 Minus
X 23527363 X 15338881..15339585 2132..1428 3525 100 Minus
Blast to na_te.dros performed 2019-03-16 10:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 941..1120 2044..1863 131 55.7 Minus

LD21606.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:08:29 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15220718..15221424 1428..2131 99 <- Minus
chrX 15221481..15222907 1..1427 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:28 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 1..1860 29..1888 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:02 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 1..1860 29..1888 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:31:18 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 1..1860 29..1888 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:39 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 1..1860 29..1888 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:56:21 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 1..1860 29..1888 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:53 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 471..2601 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:01 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 471..2601 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:31:18 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 32..2162 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:40 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 471..2601 1..2131 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:56:21 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 185..2315 1..2131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:29 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
X 15330784..15331487 1428..2131 100 <- Minus
X 15331544..15332970 1..1427 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:29 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
X 15330784..15331487 1428..2131 100 <- Minus
X 15331544..15332970 1..1427 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:29 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
X 15330784..15331487 1428..2131 100 <- Minus
X 15331544..15332970 1..1427 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:31:18 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15224817..15225520 1428..2131 100 <- Minus
arm_X 15225577..15227003 1..1427 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:33 Download gff for LD21606.complete
Subject Subject Range Query Range Percent Splice Strand
X 15338882..15339585 1428..2131 100 <- Minus
X 15339642..15341068 1..1427 100   Minus

LD21606.hyp Sequence

Translation from 0 to 1887

> LD21606.hyp
HIHLVASASMLPFVQENVPEMLLQPARLAFCANLHVGRPRDDPTTLVLAR
NLKFYEFRRKDLVHYIDLKVTKLKQIATQLEAYDGPVCPFLSKQEPTDEK
VDWSMLDPPEDLPLKFGKFVWQREGIYLLIQCWKHLVVLKRPKDHGANFE
LVADHKDVVDYQMVEGPISFQAVVELEFGNGKRQRCDFQEDFLNEEPSTS
KNAGLPAKDFENLLQEVHRAQAELDSQRMQNQKELAHVQDLLYFGTPGQR
SLLLEEKQPLRRLGDVWTRICGDYFVCGTLLVNITGTNRLTIVKELYPIV
VIEPHTDFSVEHRLYELPLQADGQPPEDYDQLAQFWACQDQHSRRLKWRP
VEKERILPPERSAAMVVSLRLVDLLEAEKLILMATYEMGEDASPRQIHLI
TFDVKKLLDKTESLAPTFSPATLHQDFLAVIMTHTARCSLKLEFQSAQDC
TTFEQLLVSTLQFQLIQAQEANKEPTSDLLDDSEPGSHFQSSNIAADPVQ
RIFYNRQPQSQWCDTLLLRDDPGKHWHVYARTDDRLRLLLHRLTRDLLQL
HCNLNVLEVAEHNMSPADMEMELLNSLFEEMDAWKVLSEPAASVEQRREQ
LTQLHKAQMASDVLASMLFTDDDDDNGA*

LD21606.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9114-PA 619 CG9114-PA 1..619 10..628 3250 100 Plus

LD21606.pep Sequence

Translation from 28 to 1887

> LD21606.pep
MLPFVQENVPEMLLQPARLAFCANLHVGRPRDDPTTLVLARNLKFYEFRR
KDLVHYIDLKVTKLKQIATQLEAYDGPVCPFLSKQEPTDEKVDWSMLDPP
EDLPLKFGKFVWQREGIYLLIQCWKHLVVLKRPKDHGANFELVADHKDVV
DYQMVEGPISFQAVVELEFGNGKRQRCDFQEDFLNEEPSTSKNAGLPAKD
FENLLQEVHRAQAELDSQRMQNQKELAHVQDLLYFGTPGQRSLLLEEKQP
LRRLGDVWTRICGDYFVCGTLLVNITGTNRLTIVKELYPIVVIEPHTDFS
VEHRLYELPLQADGQPPEDYDQLAQFWACQDQHSRRLKWRPVEKERILPP
ERSAAMVVSLRLVDLLEAEKLILMATYEMGEDASPRQIHLITFDVKKLLD
KTESLAPTFSPATLHQDFLAVIMTHTARCSLKLEFQSAQDCTTFEQLLVS
TLQFQLIQAQEANKEPTSDLLDDSEPGSHFQSSNIAADPVQRIFYNRQPQ
SQWCDTLLLRDDPGKHWHVYARTDDRLRLLLHRLTRDLLQLHCNLNVLEV
AEHNMSPADMEMELLNSLFEEMDAWKVLSEPAASVEQRREQLTQLHKAQM
ASDVLASMLFTDDDDDNGA*

LD21606.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21045-PA 641 GF21045-PA 1..631 1..609 1656 50.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19408-PA 616 GG19408-PA 1..614 1..614 2955 90.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24479-PA 633 GH24479-PA 1..631 1..609 1116 41.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9114-PA 619 CG9114-PA 1..619 1..619 3250 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11218-PA 617 GI11218-PA 1..610 1..611 1334 48 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14747-PA 642 GL14747-PA 1..641 1..616 1663 55.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21552-PA 642 GA21552-PA 1..641 1..616 1676 56.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10978-PA 622 GM10978-PA 1..611 1..611 3005 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15810-PA 619 GD15810-PA 1..619 1..619 3062 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16860-PA 628 GJ16860-PA 1..617 1..607 1272 45 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19854-PA 669 GK19854-PA 1..658 1..609 1213 42.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16056-PA 617 GE16056-PA 1..615 1..614 2914 88.1 Plus