BDGP Sequence Production Resources |
Search the DGRC for LD21608
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 216 |
Well: | 8 |
Vector: | pOT2 |
Associated Gene/Transcript | row-RB |
Protein status: | LD21608.pep: gold |
Preliminary Size: | 2186 |
Sequenced Size: | 2268 |
Gene | Date | Evidence |
---|---|---|
CG8092 | 2001-01-01 | Release 2 assignment |
CG8092 | 2001-10-10 | Blastp of sequenced clone |
CG8092 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8092 | 2008-04-29 | Release 5.5 accounting |
CG8092 | 2008-08-15 | Release 5.9 accounting |
CG8092 | 2008-12-18 | 5.12 accounting |
2268 bp (2268 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061301
> LD21608.complete GTACATCCACGCAAGGAAAGCTAATTCGAGCGAAAAAAAATTTACTTAGC TCTTAATATTTTTAAAAACAACGCCCTCGCTGGGCCAGTGGTCGGTTAAC TAGTTAGCTGTAAGATGACGCGCGTAACGAGAAGTGAAATCTCCCTGGAC ATGGAGTTCTGGGTGGAGGAGCTGTCGCCGGCACAATTGGCGTACTACGA GAAGATTACTAACGAGCACAACGCGGTGAAGGGTGCACTAAAGAACGCGG TTAGCGCCAACGAGGGCAAGGAGCTGTTTAACGGCCAGGTGTTCCAGGCC TACTCCTTTAAGGGCAAAGTGCTGCAGGAGCTCAAGGAGGCTACGCTGCC CAAAAAACCACCCAAGCCGACGGACTCTCCCTCAACACCCGCCGCCCAAA GCGGTGGCACAGGGCGGGGTCGTGGCCGCCCACCACGACAACCATCCAAC ATCGCCTACCTGGAGTCCTCCGATGAGGGAGACGACGATATGCCGCTGGC CAAGCGACTGGCGCTGTCTGCAGGCAAAAAAGCAGTGGCCGTGGCCAATG CATCTTCCTCGTTCACCCCGAAATCCAGTAAGAAGGCTGCATCCGCTGCT AGTGGAGGATCTTCTTCACCGGTACCTAAGAGCAGTGGAAAACTATTTAA GGAATCCAAACCGGACATCGAATCGCCGCCGAAGAACTACCGCCCCGCCG AGGTTAATTCGGTGGGCGGTCTGGTGGTGGGCAGCACCGACGAAAGCAAG GATAGCAAAGACGGCAAGGATGGCAAGGATAACAAGATGCAAGGAAAGAC ATATCCATCTCTGGTGGTGCTAGCAAAGCCTTTTCTCAAGATCAAAGACA TGGCTGCCACCCGCAGCAAGCTGGACTCGAAGGTTAAGCTGGTGCTCATG CTTACGCCCAATAAATTCTGCGAGTGGCTGCTCCAGGAGGGATTGCTACG CGCTCAACAGCATTGCATAAACCATCGCAACAACGAGCTCAAATTGGGAA TTTATTCGGATGTGACCAAGTTTCCCTACACTGGTGGCTATGTGTGGATC AGCGAATGTTGCCCCTACCGCTTCGTCTCCGTGTTCAACAATTCCATTTT CGAAGGAGCTCAGCACCCACCCACATTCCTGTTGAAGTTAATTTACCACT GGGCTTGCCAGACCAGTATTCAAAATGTGGTGCAGTGGGTTAAGGTGGAC AGTGTTTATATCAAAGGAATCTACACCTGGCTTAGAGCCATTTGCACTTT GGCAGTGCATCAAAAATGCAAGAAGCTGGGCGGTCCCGGCAAGTTTGTGG AGGTGGGTGTTATTTCCCTAGGAACCACATCCCAAGATGGCTCCCAGCGA CAAGTGAAAGTTGAGGTTCTGGGCGTCTATGATTATGCGGAGAAGTCCAT CCGACTGCGGGCTGTAGAGCCAATCACCGATGGTGATCGTAACTACAAAA AGCGATTCCAGGCCATTCTTGAGCCACTGTCGCGCTGGGTGCACAAGGAC AGCACCATTTGTATAGACTTGACTGTCGACAAGATCACCCTCTTCAGCAT GGGATTCAAAAATATTGTCCAAGCAGCTGCCACTGACAACACAGCCAAGC ACAACAACTCAGCGGTAATGGAATATTTGCGACGGATTGTGCCGCGCATG TTCCAGAACACCCTATCGTTGCTATCTCGCCAGATGATTCAACAATTCCT CGACGAGTTGGTATGGCGAGAGTCCTTTGGTACATATGCCTTGCAGGCAT TCAACAATATCATAATACACATTGCCGAGCAGACAAGAGTAACCACCAAT GAGACAATCACTCAGCGTCTGTATCAGGTGGCAACCAATCCGTTCAAGGA CTGGAGTATTTTGCCGGCCAACTACAAGGAGACACCTGCCAATGCTGCTC CCAAGCGCCTCAAGAAACGTTAGTACTATCGTACTTTTGTAGCAAGTTTT TATTTAGGCCGTGAATAGAATAGTGCGTTATGATAATCTGTTAAGTGCCT GCGTTTCTCACTCCAAACTGAAATGTTTTCGTTTTGTTTGATTAGTTTTG GTTAATCGAACCCAACAGCTGAGCTCAGGTCCACTTATTGTGTTATGTGA ATTGTGAATTTATATAATCTATATAGGTGAAATGTATCATTGATATATTC ACATATGTACAATTTAAGCATTACTTCCTGACATTTCTCGTGTCTAATTA TTTTAAAACAACCCCATTAGAGAAACCATAAATAAACTTGCAAGAAATTT AAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 11099816..11100813 | 998..1 | 4990 | 100 | Minus |
chr2R | 21145070 | chr2R | 11098934..11099766 | 1829..997 | 4165 | 100 | Minus |
chr2R | 21145070 | chr2R | 11098455..11098879 | 2250..1826 | 2125 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 15212606..15213603 | 998..1 | 4990 | 100 | Minus |
2R | 25286936 | 2R | 15211724..15212556 | 1829..997 | 4165 | 100 | Minus |
2R | 25286936 | 2R | 15211243..15211669 | 2252..1826 | 2135 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 15213805..15214802 | 998..1 | 4990 | 100 | Minus |
2R | 25260384 | 2R | 15212923..15213755 | 1829..997 | 4165 | 100 | Minus |
2R | 25260384 | 2R | 15212442..15212868 | 2252..1826 | 2135 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 552..640 | 2084..2173 | 114 | 61.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 11098455..11098877 | 1828..2250 | 100 | <- | Minus |
chr2R | 11098936..11099765 | 998..1827 | 100 | <- | Minus |
chr2R | 11099817..11100813 | 1..997 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8092-RB | 1..1809 | 115..1923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
row-RB | 1..1809 | 115..1923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
row-RB | 1..1809 | 115..1923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8092-RB | 1..1809 | 115..1923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
row-RB | 1..1809 | 115..1923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8092-RB | 30..2279 | 1..2250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
row-RB | 30..2279 | 1..2250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
row-RB | 32..2281 | 1..2250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8092-RB | 30..2279 | 1..2250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
row-RB | 32..2281 | 1..2250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15211245..15211667 | 1828..2250 | 100 | <- | Minus |
2R | 15211726..15212555 | 998..1827 | 100 | <- | Minus |
2R | 15212607..15213603 | 1..997 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15211245..15211667 | 1828..2250 | 100 | <- | Minus |
2R | 15211726..15212555 | 998..1827 | 100 | <- | Minus |
2R | 15212607..15213603 | 1..997 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15211245..15211667 | 1828..2250 | 100 | <- | Minus |
2R | 15211726..15212555 | 998..1827 | 100 | <- | Minus |
2R | 15212607..15213603 | 1..997 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 11098750..11099172 | 1828..2250 | 100 | <- | Minus |
arm_2R | 11099231..11100060 | 998..1827 | 100 | <- | Minus |
arm_2R | 11100112..11101108 | 1..997 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15212925..15213754 | 998..1827 | 100 | <- | Minus |
2R | 15212444..15212866 | 1828..2250 | 100 | <- | Minus |
2R | 15213806..15214802 | 1..997 | 100 | Minus |
Translation from 114 to 1922
> LD21608.pep MTRVTRSEISLDMEFWVEELSPAQLAYYEKITNEHNAVKGALKNAVSANE GKELFNGQVFQAYSFKGKVLQELKEATLPKKPPKPTDSPSTPAAQSGGTG RGRGRPPRQPSNIAYLESSDEGDDDMPLAKRLALSAGKKAVAVANASSSF TPKSSKKAASAASGGSSSPVPKSSGKLFKESKPDIESPPKNYRPAEVNSV GGLVVGSTDESKDSKDGKDGKDNKMQGKTYPSLVVLAKPFLKIKDMAATR SKLDSKVKLVLMLTPNKFCEWLLQEGLLRAQQHCINHRNNELKLGIYSDV TKFPYTGGYVWISECCPYRFVSVFNNSIFEGAQHPPTFLLKLIYHWACQT SIQNVVQWVKVDSVYIKGIYTWLRAICTLAVHQKCKKLGGPGKFVEVGVI SLGTTSQDGSQRQVKVEVLGVYDYAEKSIRLRAVEPITDGDRNYKKRFQA ILEPLSRWVHKDSTICIDLTVDKITLFSMGFKNIVQAAATDNTAKHNNSA VMEYLRRIVPRMFQNTLSLLSRQMIQQFLDELVWRESFGTYALQAFNNII IHIAEQTRVTTNETITQRLYQVATNPFKDWSILPANYKETPANAAPKRLK KR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12625-PA | 1290 | GF12625-PA | 1..604 | 1..601 | 2746 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22370-PA | 1279 | GG22370-PA | 1..600 | 1..601 | 3159 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20795-PA | 1312 | GH20795-PA | 1..609 | 1..601 | 2644 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
row-PB | 602 | CG8092-PB | 1..602 | 1..602 | 3121 | 100 | Plus |
row-PC | 1301 | CG8092-PC | 1..601 | 1..601 | 3116 | 100 | Plus |
row-PA | 1281 | CG8092-PA | 1..601 | 1..601 | 3116 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20880-PA | 1327 | GI20880-PA | 1..607 | 1..601 | 2651 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11474-PA | 1271 | GL11474-PA | 1..603 | 1..601 | 2650 | 87.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20818-PA | 1271 | GA20818-PA | 1..603 | 1..601 | 2638 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20154-PA | 770 | GM20154-PA | 1..601 | 1..601 | 3196 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25633-PA | 1260 | GD25633-PA | 1..580 | 1..601 | 3083 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20615-PA | 1300 | GJ20615-PA | 1..611 | 1..601 | 2728 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19444-PA | 1322 | GK19444-PA | 1..614 | 1..601 | 2663 | 87.8 | Plus |
Dwil\GK13681-PA | 127 | GK13681-PA | 70..127 | 545..602 | 265 | 87.9 | Plus |
Dwil\GK13681-PA | 127 | GK13681-PA | 5..75 | 419..485 | 174 | 54.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12258-PA | 1281 | GE12258-PA | 1..601 | 1..601 | 3180 | 97.8 | Plus |
Translation from 114 to 1922
> LD21608.hyp MTRVTRSEISLDMEFWVEELSPAQLAYYEKITNEHNAVKGALKNAVSANE GKELFNGQVFQAYSFKGKVLQELKEATLPKKPPKPTDSPSTPAAQSGGTG RGRGRPPRQPSNIAYLESSDEGDDDMPLAKRLALSAGKKAVAVANASSSF TPKSSKKAASAASGGSSSPVPKSSGKLFKESKPDIESPPKNYRPAEVNSV GGLVVGSTDESKDSKDGKDGKDNKMQGKTYPSLVVLAKPFLKIKDMAATR SKLDSKVKLVLMLTPNKFCEWLLQEGLLRAQQHCINHRNNELKLGIYSDV TKFPYTGGYVWISECCPYRFVSVFNNSIFEGAQHPPTFLLKLIYHWACQT SIQNVVQWVKVDSVYIKGIYTWLRAICTLAVHQKCKKLGGPGKFVEVGVI SLGTTSQDGSQRQVKVEVLGVYDYAEKSIRLRAVEPITDGDRNYKKRFQA ILEPLSRWVHKDSTICIDLTVDKITLFSMGFKNIVQAAATDNTAKHNNSA VMEYLRRIVPRMFQNTLSLLSRQMIQQFLDELVWRESFGTYALQAFNNII IHIAEQTRVTTNETITQRLYQVATNPFKDWSILPANYKETPANAAPKRLK KR*