Clone LD21608 Report

Search the DGRC for LD21608

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:8
Vector:pOT2
Associated Gene/Transcriptrow-RB
Protein status:LD21608.pep: gold
Preliminary Size:2186
Sequenced Size:2268

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8092 2001-01-01 Release 2 assignment
CG8092 2001-10-10 Blastp of sequenced clone
CG8092 2003-01-01 Sim4 clustering to Release 3
CG8092 2008-04-29 Release 5.5 accounting
CG8092 2008-08-15 Release 5.9 accounting
CG8092 2008-12-18 5.12 accounting

Clone Sequence Records

LD21608.complete Sequence

2268 bp (2268 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061301

> LD21608.complete
GTACATCCACGCAAGGAAAGCTAATTCGAGCGAAAAAAAATTTACTTAGC
TCTTAATATTTTTAAAAACAACGCCCTCGCTGGGCCAGTGGTCGGTTAAC
TAGTTAGCTGTAAGATGACGCGCGTAACGAGAAGTGAAATCTCCCTGGAC
ATGGAGTTCTGGGTGGAGGAGCTGTCGCCGGCACAATTGGCGTACTACGA
GAAGATTACTAACGAGCACAACGCGGTGAAGGGTGCACTAAAGAACGCGG
TTAGCGCCAACGAGGGCAAGGAGCTGTTTAACGGCCAGGTGTTCCAGGCC
TACTCCTTTAAGGGCAAAGTGCTGCAGGAGCTCAAGGAGGCTACGCTGCC
CAAAAAACCACCCAAGCCGACGGACTCTCCCTCAACACCCGCCGCCCAAA
GCGGTGGCACAGGGCGGGGTCGTGGCCGCCCACCACGACAACCATCCAAC
ATCGCCTACCTGGAGTCCTCCGATGAGGGAGACGACGATATGCCGCTGGC
CAAGCGACTGGCGCTGTCTGCAGGCAAAAAAGCAGTGGCCGTGGCCAATG
CATCTTCCTCGTTCACCCCGAAATCCAGTAAGAAGGCTGCATCCGCTGCT
AGTGGAGGATCTTCTTCACCGGTACCTAAGAGCAGTGGAAAACTATTTAA
GGAATCCAAACCGGACATCGAATCGCCGCCGAAGAACTACCGCCCCGCCG
AGGTTAATTCGGTGGGCGGTCTGGTGGTGGGCAGCACCGACGAAAGCAAG
GATAGCAAAGACGGCAAGGATGGCAAGGATAACAAGATGCAAGGAAAGAC
ATATCCATCTCTGGTGGTGCTAGCAAAGCCTTTTCTCAAGATCAAAGACA
TGGCTGCCACCCGCAGCAAGCTGGACTCGAAGGTTAAGCTGGTGCTCATG
CTTACGCCCAATAAATTCTGCGAGTGGCTGCTCCAGGAGGGATTGCTACG
CGCTCAACAGCATTGCATAAACCATCGCAACAACGAGCTCAAATTGGGAA
TTTATTCGGATGTGACCAAGTTTCCCTACACTGGTGGCTATGTGTGGATC
AGCGAATGTTGCCCCTACCGCTTCGTCTCCGTGTTCAACAATTCCATTTT
CGAAGGAGCTCAGCACCCACCCACATTCCTGTTGAAGTTAATTTACCACT
GGGCTTGCCAGACCAGTATTCAAAATGTGGTGCAGTGGGTTAAGGTGGAC
AGTGTTTATATCAAAGGAATCTACACCTGGCTTAGAGCCATTTGCACTTT
GGCAGTGCATCAAAAATGCAAGAAGCTGGGCGGTCCCGGCAAGTTTGTGG
AGGTGGGTGTTATTTCCCTAGGAACCACATCCCAAGATGGCTCCCAGCGA
CAAGTGAAAGTTGAGGTTCTGGGCGTCTATGATTATGCGGAGAAGTCCAT
CCGACTGCGGGCTGTAGAGCCAATCACCGATGGTGATCGTAACTACAAAA
AGCGATTCCAGGCCATTCTTGAGCCACTGTCGCGCTGGGTGCACAAGGAC
AGCACCATTTGTATAGACTTGACTGTCGACAAGATCACCCTCTTCAGCAT
GGGATTCAAAAATATTGTCCAAGCAGCTGCCACTGACAACACAGCCAAGC
ACAACAACTCAGCGGTAATGGAATATTTGCGACGGATTGTGCCGCGCATG
TTCCAGAACACCCTATCGTTGCTATCTCGCCAGATGATTCAACAATTCCT
CGACGAGTTGGTATGGCGAGAGTCCTTTGGTACATATGCCTTGCAGGCAT
TCAACAATATCATAATACACATTGCCGAGCAGACAAGAGTAACCACCAAT
GAGACAATCACTCAGCGTCTGTATCAGGTGGCAACCAATCCGTTCAAGGA
CTGGAGTATTTTGCCGGCCAACTACAAGGAGACACCTGCCAATGCTGCTC
CCAAGCGCCTCAAGAAACGTTAGTACTATCGTACTTTTGTAGCAAGTTTT
TATTTAGGCCGTGAATAGAATAGTGCGTTATGATAATCTGTTAAGTGCCT
GCGTTTCTCACTCCAAACTGAAATGTTTTCGTTTTGTTTGATTAGTTTTG
GTTAATCGAACCCAACAGCTGAGCTCAGGTCCACTTATTGTGTTATGTGA
ATTGTGAATTTATATAATCTATATAGGTGAAATGTATCATTGATATATTC
ACATATGTACAATTTAAGCATTACTTCCTGACATTTCTCGTGTCTAATTA
TTTTAAAACAACCCCATTAGAGAAACCATAAATAAACTTGCAAGAAATTT
AAAAAAAAAAAAAAAAAA

LD21608.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
row-RB 2379 row-RB 30..2281 1..2252 11260 100 Plus
row-RA 4449 row-RA 58..1975 1..1918 9590 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11099816..11100813 998..1 4990 100 Minus
chr2R 21145070 chr2R 11098934..11099766 1829..997 4165 100 Minus
chr2R 21145070 chr2R 11098455..11098879 2250..1826 2125 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15212606..15213603 998..1 4990 100 Minus
2R 25286936 2R 15211724..15212556 1829..997 4165 100 Minus
2R 25286936 2R 15211243..15211669 2252..1826 2135 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15213805..15214802 998..1 4990 100 Minus
2R 25260384 2R 15212923..15213755 1829..997 4165 100 Minus
2R 25260384 2R 15212442..15212868 2252..1826 2135 100 Minus
Blast to na_te.dros performed 2019-03-15 20:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 552..640 2084..2173 114 61.5 Plus

LD21608.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:03:30 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11098455..11098877 1828..2250 100 <- Minus
chr2R 11098936..11099765 998..1827 100 <- Minus
chr2R 11099817..11100813 1..997 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:29 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
CG8092-RB 1..1809 115..1923 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:51 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
row-RB 1..1809 115..1923 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:47:36 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
row-RB 1..1809 115..1923 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:44 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
CG8092-RB 1..1809 115..1923 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:39 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
row-RB 1..1809 115..1923 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:17:17 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
CG8092-RB 30..2279 1..2250 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:51 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
row-RB 30..2279 1..2250 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:36 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
row-RB 32..2281 1..2250 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:45 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
CG8092-RB 30..2279 1..2250 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:39 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
row-RB 32..2281 1..2250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:30 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15211245..15211667 1828..2250 100 <- Minus
2R 15211726..15212555 998..1827 100 <- Minus
2R 15212607..15213603 1..997 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:30 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15211245..15211667 1828..2250 100 <- Minus
2R 15211726..15212555 998..1827 100 <- Minus
2R 15212607..15213603 1..997 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:03:30 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15211245..15211667 1828..2250 100 <- Minus
2R 15211726..15212555 998..1827 100 <- Minus
2R 15212607..15213603 1..997 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:36 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11098750..11099172 1828..2250 100 <- Minus
arm_2R 11099231..11100060 998..1827 100 <- Minus
arm_2R 11100112..11101108 1..997 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:39 Download gff for LD21608.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15212925..15213754 998..1827 100 <- Minus
2R 15212444..15212866 1828..2250 100 <- Minus
2R 15213806..15214802 1..997 100   Minus

LD21608.pep Sequence

Translation from 114 to 1922

> LD21608.pep
MTRVTRSEISLDMEFWVEELSPAQLAYYEKITNEHNAVKGALKNAVSANE
GKELFNGQVFQAYSFKGKVLQELKEATLPKKPPKPTDSPSTPAAQSGGTG
RGRGRPPRQPSNIAYLESSDEGDDDMPLAKRLALSAGKKAVAVANASSSF
TPKSSKKAASAASGGSSSPVPKSSGKLFKESKPDIESPPKNYRPAEVNSV
GGLVVGSTDESKDSKDGKDGKDNKMQGKTYPSLVVLAKPFLKIKDMAATR
SKLDSKVKLVLMLTPNKFCEWLLQEGLLRAQQHCINHRNNELKLGIYSDV
TKFPYTGGYVWISECCPYRFVSVFNNSIFEGAQHPPTFLLKLIYHWACQT
SIQNVVQWVKVDSVYIKGIYTWLRAICTLAVHQKCKKLGGPGKFVEVGVI
SLGTTSQDGSQRQVKVEVLGVYDYAEKSIRLRAVEPITDGDRNYKKRFQA
ILEPLSRWVHKDSTICIDLTVDKITLFSMGFKNIVQAAATDNTAKHNNSA
VMEYLRRIVPRMFQNTLSLLSRQMIQQFLDELVWRESFGTYALQAFNNII
IHIAEQTRVTTNETITQRLYQVATNPFKDWSILPANYKETPANAAPKRLK
KR*

LD21608.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12625-PA 1290 GF12625-PA 1..604 1..601 2746 89.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22370-PA 1279 GG22370-PA 1..600 1..601 3159 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20795-PA 1312 GH20795-PA 1..609 1..601 2644 85.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
row-PB 602 CG8092-PB 1..602 1..602 3121 100 Plus
row-PC 1301 CG8092-PC 1..601 1..601 3116 100 Plus
row-PA 1281 CG8092-PA 1..601 1..601 3116 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20880-PA 1327 GI20880-PA 1..607 1..601 2651 88.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11474-PA 1271 GL11474-PA 1..603 1..601 2650 87.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20818-PA 1271 GA20818-PA 1..603 1..601 2638 86.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20154-PA 770 GM20154-PA 1..601 1..601 3196 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25633-PA 1260 GD25633-PA 1..580 1..601 3083 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20615-PA 1300 GJ20615-PA 1..611 1..601 2728 86.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19444-PA 1322 GK19444-PA 1..614 1..601 2663 87.8 Plus
Dwil\GK13681-PA 127 GK13681-PA 70..127 545..602 265 87.9 Plus
Dwil\GK13681-PA 127 GK13681-PA 5..75 419..485 174 54.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12258-PA 1281 GE12258-PA 1..601 1..601 3180 97.8 Plus

LD21608.hyp Sequence

Translation from 114 to 1922

> LD21608.hyp
MTRVTRSEISLDMEFWVEELSPAQLAYYEKITNEHNAVKGALKNAVSANE
GKELFNGQVFQAYSFKGKVLQELKEATLPKKPPKPTDSPSTPAAQSGGTG
RGRGRPPRQPSNIAYLESSDEGDDDMPLAKRLALSAGKKAVAVANASSSF
TPKSSKKAASAASGGSSSPVPKSSGKLFKESKPDIESPPKNYRPAEVNSV
GGLVVGSTDESKDSKDGKDGKDNKMQGKTYPSLVVLAKPFLKIKDMAATR
SKLDSKVKLVLMLTPNKFCEWLLQEGLLRAQQHCINHRNNELKLGIYSDV
TKFPYTGGYVWISECCPYRFVSVFNNSIFEGAQHPPTFLLKLIYHWACQT
SIQNVVQWVKVDSVYIKGIYTWLRAICTLAVHQKCKKLGGPGKFVEVGVI
SLGTTSQDGSQRQVKVEVLGVYDYAEKSIRLRAVEPITDGDRNYKKRFQA
ILEPLSRWVHKDSTICIDLTVDKITLFSMGFKNIVQAAATDNTAKHNNSA
VMEYLRRIVPRMFQNTLSLLSRQMIQQFLDELVWRESFGTYALQAFNNII
IHIAEQTRVTTNETITQRLYQVATNPFKDWSILPANYKETPANAAPKRLK
KR*

LD21608.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
row-PB 602 CG8092-PB 1..602 1..602 3121 100 Plus
row-PC 1301 CG8092-PC 1..601 1..601 3116 100 Plus
row-PA 1281 CG8092-PA 1..601 1..601 3116 100 Plus