Clone LD21610 Report

Search the DGRC for LD21610

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:10
Vector:pOT2
Associated Gene/TranscriptAtac1-RA
Protein status:LD21610.pep: gold
Preliminary Size:1300
Sequenced Size:1196

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9200 2001-01-01 Release 2 assignment
CG9200 2002-05-16 Blastp of sequenced clone
CG9200 2003-01-01 Sim4 clustering to Release 3
Atac1 2008-04-29 Release 5.5 accounting
Atac1 2008-08-15 Release 5.9 accounting
Atac1 2008-12-18 5.12 accounting

Clone Sequence Records

LD21610.complete Sequence

1196 bp (1196 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118911

> LD21610.complete
GTATTTGGTGCTAATTCTTTGTAATGGAAATAGCAGAGATATCTGCAGAA
GATGAGGATGTGTTTCACTTTGAGACCGAGCACCTGGCCCTGCGTGGCAA
CCAGTGCTATACCAATTTGCTGCGCACTTTGGCCGTGCTGCAGGCACAAA
GGATTCGGGTGCATCAGCAGATTGAGGAATTGGAAGCCACACAAAATATC
TACTTGGAGAATCCGCAACATATGCTGGACAAACTGCGAAACAACGAGCC
TTTGATAGCGGATAATTACATCACCACGACCGTTCTACCGGACTTGCCAA
CTCTGTCGCCCAATGACGAGGAAGGGGGCACAAATGAGACACCGACCGAT
GCGTCTTCATGGACGCAAGAGGCGAACAAGAATCGGGACAGGAGCAATGG
ACGGTCGGAGAATTTCAATCGCTTGTGGACCAACGAAGAGCAGAGTCGCT
TGGAGCAGCTGCTCATCCAGTATCCGCCAGAGGAAGTGGAAATGCGCAGA
TTCGGGAAGATAGCGAAGGCCTTGGGCAACAGAACGGCACAGCAAGTGTA
TAGTCGTGTCCAGAAGTATTTCCAAAAGCTGCACGATGCCGGAATGCCTG
TGCCCGGTCGCATACCCAAGCATCGACGTCCTGGTTTGAGTAAGCCGAAG
ATCAAACTTCGCAAGTCAACCTTCTTCCCCGCTCATAATATATCGCTACA
AATGCCAGAGGACGATTTCACATTTGACGACCTGCGAATCCCATCGCCTG
CGAGCGATATGCTCCTTATGCCGGCATCCAAGATCGAACCAAAGATCGAA
TCCGAGTACATGGATGCCGATCTGAATGCGGAGTCAAAGCGAAAACAGGA
ACTATGCCTTAAGCTTCTATCAGCCATTCAGGACGAGAAACGGGAAATGG
AGGACGGATATGAGCCAGACTTGCTGGCCGCCAAGTGTGCCGAGTGCGAA
GAGGCATCTGTGACCAGGACCCAATGGCGTTGTAACAGTTGTTATTGTTA
CCTTAATCTGTGCGGAGATTGCCTGGCCAGTCAGCTAATCGAAGGGCGTT
TCGAGCATTTAAGTCATGAAGTTGTAGTGGACCAAGAGTCATGACGCTCC
TAGAGTCCCATTTACTTGAGTACTAAATTACTAGACTTGCCTGTAAAGCT
ACAAATTAAATATAAAGAGAATAATTTTAAAAAAAAAAAAAAAAAA

LD21610.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Atac1-RA 1187 Atac1-RA 10..1187 1..1178 5890 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6958183..6959360 1178..1 5890 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6959093..6960276 1184..1 5920 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6959093..6960276 1184..1 5920 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:49:35 has no hits.

LD21610.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:50:36 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6958213..6959360 1..1148 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:30 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 1..1071 24..1094 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:55 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 1..1071 24..1094 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:43:38 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 1..1071 24..1094 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:32 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 1..1071 24..1094 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:09:52 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 1..1071 24..1094 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:24 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 1..1178 1..1178 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:55 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 10..1187 1..1178 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:43:38 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 53..1230 1..1178 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:32 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 1..1178 1..1178 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:09:52 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
Atac1-RA 53..1230 1..1178 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:36 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6959099..6960276 1..1178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:36 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6959099..6960276 1..1178 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:36 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6959099..6960276 1..1178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:43:38 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6959099..6960276 1..1178 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:49 Download gff for LD21610.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6959099..6960276 1..1178 100   Minus

LD21610.pep Sequence

Translation from 23 to 1093

> LD21610.pep
MEIAEISAEDEDVFHFETEHLALRGNQCYTNLLRTLAVLQAQRIRVHQQI
EELEATQNIYLENPQHMLDKLRNNEPLIADNYITTTVLPDLPTLSPNDEE
GGTNETPTDASSWTQEANKNRDRSNGRSENFNRLWTNEEQSRLEQLLIQY
PPEEVEMRRFGKIAKALGNRTAQQVYSRVQKYFQKLHDAGMPVPGRIPKH
RRPGLSKPKIKLRKSTFFPAHNISLQMPEDDFTFDDLRIPSPASDMLLMP
ASKIEPKIESEYMDADLNAESKRKQELCLKLLSAIQDEKREMEDGYEPDL
LAAKCAECEEASVTRTQWRCNSCYCYLNLCGDCLASQLIEGRFEHLSHEV
VVDQES*

LD21610.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14463-PA 369 GF14463-PA 1..369 1..356 1317 69.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23563-PA 359 GG23563-PA 1..359 1..356 1784 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13580-PA 344 GH13580-PA 10..344 7..356 1135 63.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Atac1-PA 356 CG9200-PA 1..356 1..356 1871 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24194-PA 368 GI24194-PA 36..367 13..355 1093 63.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25596-PA 360 GL25596-PA 8..360 7..356 1262 66.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21607-PA 360 GA21607-PA 8..360 7..356 1236 67 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13698-PA 359 GM13698-PA 1..359 1..356 1823 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21463-PA 361 GJ21463-PA 18..361 2..356 1174 65.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18102-PA 347 GK18102-PA 5..347 9..356 1216 67.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18387-PA 359 GE18387-PA 1..359 1..356 1770 90.8 Plus

LD21610.hyp Sequence

Translation from 23 to 1093

> LD21610.hyp
MEIAEISAEDEDVFHFETEHLALRGNQCYTNLLRTLAVLQAQRIRVHQQI
EELEATQNIYLENPQHMLDKLRNNEPLIADNYITTTVLPDLPTLSPNDEE
GGTNETPTDASSWTQEANKNRDRSNGRSENFNRLWTNEEQSRLEQLLIQY
PPEEVEMRRFGKIAKALGNRTAQQVYSRVQKYFQKLHDAGMPVPGRIPKH
RRPGLSKPKIKLRKSTFFPAHNISLQMPEDDFTFDDLRIPSPASDMLLMP
ASKIEPKIESEYMDADLNAESKRKQELCLKLLSAIQDEKREMEDGYEPDL
LAAKCAECEEASVTRTQWRCNSCYCYLNLCGDCLASQLIEGRFEHLSHEV
VVDQES*

LD21610.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Atac1-PA 356 CG9200-PA 1..356 1..356 1871 100 Plus