Clone LD21615 Report

Search the DGRC for LD21615

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:15
Vector:pOT2
Associated Gene/TranscriptCG2875-RA
Protein status:LD21615.pep: gold
Preliminary Size:1759
Sequenced Size:1681

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2875 2001-01-01 Release 2 assignment
CG2875 2001-10-10 Blastp of sequenced clone
CG2875 2003-01-01 Sim4 clustering to Release 3
CG2875 2008-04-29 Release 5.5 accounting
CG2875 2008-08-15 Release 5.9 accounting
CG2875 2008-12-18 5.12 accounting

Clone Sequence Records

LD21615.complete Sequence

1681 bp (1681 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061303

> LD21615.complete
ATTCATCTTATTTTTGTTTGTTGCGCATAATTAATATGTTTTAGCGTACA
TTTGCCAAACCGAAAATGAAACCCTTAACTGTGAAAGTGAACGATGACAC
CGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTGC
TAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATTG
CTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACACT
CGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACCG
AAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCTT
CTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAGT
GTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAACA
AGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAAT
AGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCAA
AAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTGC
CCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATCC
ATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATTA
CCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGCA
AAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGTG
GACGAGAAACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAAT
CAACCACCTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCCC
TCCATCAGTTTGATGGCCCCATTGCCTTGCTGGCTCTTCAGGGAATCTTT
ACGCTTATGCAAAAGCAGAATATCACCTATCCGGATGTGTATGAGAAGCT
GTACAATATGTTCTATCCACGGATGTTCCACAACAAGTACAAGGCACGCC
TGTTTTACTTGGCCGATATCTTTCTGACCTCCACCCATTTGCCCGAGAAT
CTGGTGGCGGCATTCGTTAAGCGTCTCGCTCGCCTGGCCCTTCAATCGCC
GACCGAAGATGCTGTTATTATGATTCGATTCGTTTGCAATCTGCTATTGA
GACATACTGGATTGCAGAAATTGATTCGCGCCAGCCATGCAGTCGATGAG
GTCAGCGATCCTTACAATCAAACAGAAACGGATCCCGTCAAATCGGAGGC
CATAAACAGTTCGCTGTGGGAAATTACGTTGCTGCAGAAACACGTTGTAC
CAGAGGTGGCCAATGCGGCACGGTTTATTAACTCATCGCTGCCCGTAATG
GAATTCGACTTAGCACCCCTCTTGGACAGAAAGGAATGCAATATTTTCGA
CGACGAATTACAGTCGAAGGCCAAACAATTTGCTCTGAACTACGAACGTC
CTACCAATTTGGCTTTGCCTAAAAACCAATTCGTGACCAAATACTGGGAC
CTCATCTAGATTAGTGTTACTATTGCTAAGTTTAAGCAGGATTAAAGTGC
TGCCTGTTATTGGGCTGCTGATGTGCCAATTCGGCCTGAAACCAATCGGC
TGCTGAAATGTAAAAAAAAAAAAAAAAAAAA

LD21615.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RA 1896 CG2875-RA 63..1724 1..1662 8310 100 Plus
CG2875.a 1881 CG2875.a 51..1709 1..1662 8240 99.8 Plus
CG2875-RB 1708 CG2875-RB 51..1708 1..1661 8235 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3466025..3466734 912..203 3535 99.9 Minus
chrX 22417052 chrX 3465432..3465962 1442..912 2655 100 Minus
chrX 22417052 chrX 3465149..3465367 1661..1443 1095 100 Minus
chrX 22417052 chrX 3466798..3467000 203..1 1015 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3572595..3573304 912..203 3550 100 Minus
X 23542271 X 3572003..3572533 1442..912 2655 100 Minus
X 23542271 X 3571720..3571939 1662..1443 1100 100 Minus
X 23542271 X 3573368..3573570 203..1 1015 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3580693..3581402 912..203 3550 100 Minus
X 23527363 X 3580101..3580631 1442..912 2655 100 Minus
X 23527363 X 3579818..3580037 1662..1443 1100 100 Minus
X 23527363 X 3581466..3581668 203..1 1015 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:36:26 has no hits.

LD21615.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:37:25 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3466798..3467000 1..203 100   Minus
chrX 3465149..3465367 1443..1661 100 <- Minus
chrX 3465432..3465961 913..1442 100 <- Minus
chrX 3466025..3466733 204..912 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:32 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 1..1494 66..1559 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:53 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 1..1494 66..1559 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:02 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 1..1494 66..1559 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:47 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 1..1494 66..1559 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:45:41 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 1..1494 66..1559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:17:21 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 51..1711 1..1661 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:53 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 51..1711 1..1661 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:02 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 53..1713 1..1661 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:47 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 51..1711 1..1661 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:45:41 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 53..1713 1..1661 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:25 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
X 3571721..3571939 1443..1661 100 <- Minus
X 3572003..3572532 913..1442 100 <- Minus
X 3572595..3573303 204..912 100 <- Minus
X 3573368..3573570 1..203 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:25 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
X 3571721..3571939 1443..1661 100 <- Minus
X 3572003..3572532 913..1442 100 <- Minus
X 3572595..3573303 204..912 100 <- Minus
X 3573368..3573570 1..203 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:25 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
X 3571721..3571939 1443..1661 100 <- Minus
X 3572003..3572532 913..1442 100 <- Minus
X 3572595..3573303 204..912 100 <- Minus
X 3573368..3573570 1..203 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:02 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3465754..3465972 1443..1661 100 <- Minus
arm_X 3466036..3466565 913..1442 100 <- Minus
arm_X 3466628..3467336 204..912 100 <- Minus
arm_X 3467401..3467603 1..203 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:42 Download gff for LD21615.complete
Subject Subject Range Query Range Percent Splice Strand
X 3579819..3580037 1443..1661 100 <- Minus
X 3580101..3580630 913..1442 100 <- Minus
X 3580693..3581401 204..912 100 <- Minus
X 3581466..3581668 1..203 100   Minus

LD21615.pep Sequence

Translation from 65 to 1558

> LD21615.pep
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLKNTP
DNMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENL
LVDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTP
TTALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLL
DMGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLH
RQILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQK
QNITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAF
VKRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPY
NQTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLA
PLLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLI*

LD21615.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22308-PA 497 GF22308-PA 1..497 1..497 1978 76.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18574-PA 497 GG18574-PA 1..497 1..497 2374 89.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12543-PA 513 GH12543-PA 12..513 20..497 1392 55.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PA 497 CG2875-PA 1..497 1..497 2550 100 Plus
CG2875-PC 496 CG2875-PC 1..496 1..497 2533 99.8 Plus
CG2875-PB 496 CG2875-PB 1..496 1..497 2533 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14900-PA 515 GI14900-PA 29..515 21..497 1519 60.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15786-PA 476 GL15786-PA 9..476 13..497 1306 54 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15496-PA 494 GA15496-PA 9..494 13..497 1414 56.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12718-PA 497 GM12718-PA 1..497 1..497 2465 93.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11637-PA 129 GD11637-PA 1..129 369..497 667 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15331-PA 483 GJ15331-PA 27..483 20..497 1459 59.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25035-PA 530 GK25035-PA 28..530 21..497 1414 57.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16887-PA 497 GE16887-PA 1..497 1..497 2370 89.9 Plus

LD21615.hyp Sequence

Translation from 65 to 1558

> LD21615.hyp
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLKNTP
DNMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENL
LVDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTP
TTALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLL
DMGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLH
RQILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQK
QNITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAF
VKRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPY
NQTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLA
PLLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLI*

LD21615.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PA 497 CG2875-PA 1..497 1..497 2550 100 Plus
CG2875-PC 496 CG2875-PC 1..496 1..497 2533 99.8 Plus
CG2875-PB 496 CG2875-PB 1..496 1..497 2533 99.8 Plus