BDGP Sequence Production Resources |
Search the DGRC for LD21616
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 216 |
Well: | 16 |
Vector: | pOT2 |
Associated Gene/Transcript | fl(2)d-RA |
Protein status: | LD21616.pep: gold |
Preliminary Size: | 2476 |
Sequenced Size: | 2561 |
Gene | Date | Evidence |
---|---|---|
CG6315 | 2001-01-01 | Release 2 assignment |
CG6315 | 2001-11-29 | Blastp of sequenced clone |
CG6315 | 2003-01-01 | Sim4 clustering to Release 3 |
fl(2)d | 2008-04-29 | Release 5.5 accounting |
fl(2)d | 2008-08-15 | Release 5.9 accounting |
fl(2)d | 2008-12-18 | 5.12 accounting |
2561 bp (2561 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069478
> LD21616.complete CAGCAGCAAACGAGAAATCAGCTCGCAGCGCAGAAAAATTAAAAAATATC GCCGTAAAAGTGAGCCCAACCGACCCAAAACATATGAAAAGTGTGAATTA AAGGACAATAAAGATATAAATCATTAATTAAGCTTTGAGCAAGCGCGAAA AGTACGCGAAATCAACGTTTTGCAAAACGTTCGCCATACGCGTCGCCATT GGTGTGAGCGATAGCTTGCCTGTGTGTGCGTGTGGTATTGGAGGAGGTGA GAGCGCCTGTGTGTGTGTGTGTTTGCGTGCGTGTGTGAGAGCGAGCGAGC GGCCCCTATGAAAAGCAACAGCAACAACGCCAGCAAAGGACCCGCAACAA CAACAACAACAACAGCAAGAGTAACAAGCACAGCGTTTTAATATCCAAAT AATGAGTGTCGCTGCAATGACTATGGACGATCAAAGACCCTGTATGAACA GTTACGACAAAATGCCCCCGACCAAATACGAGCAAAACCTAAATATCCTA AACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCCCGCCTCCCCAACGCC CTCCGGCTTGGAGGACCACCATCATCATCACCATCCGCATCCGCACCATC ATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAACAGCAACACTTGCAG CAGCAGCAACAACAGCAGCAGCAGCAACATGCAGCAGCTGTTGCAGAGGC TGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCGAAGATGAGATCGAGA ATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAATGCGCGGACGCCCAG CGACGCGAGAAGATCCTCATGCGACGGCTGGCCAACAAGGAGCAAGAATT CCAGGACTATGTGAGCCAAATTGCCGAGTACAAGGCCCAACAGGCGCCAA CTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCTGCGGTCAATCTCCTG TTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAAGGCCAAGCTGGAGGA GACCCAGAACGAGCTGTCCGCATGGAAGTTCACGCCGGACTCTAATACCG GCAAACGCCTAATGGCCAAGTGCCGACTGCTCTATCAGGAGAACGAGGAG CTGGGCAAGATGACCTCCAACGGCAGACTGGCCAAGCTGGAGACCGAACT GGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGAAATCGCAGTCGGAGT TGGACGACTTCCTGCAGGAGCTGGACGAGGATGTGGAGGGCATGCAGAGC ACCATTCTGTTTTTGCAGCAAGAACTAAAGACCACACGCGATCGCATACA AACGCTTGAGAAGGAGAACGCCCAGTTGAAACAGGCCATCAAGGATGAGG TTGTGGCTCCAGCGGCTGCCACCAACGGTGGCACCAACACGACGATAAAT AAGCTAGAGACCATTCACGAGGACGCTTGCATGGCGAATAACCCAACGAA TCCGGATTGTTACAATGGGAATACCAACAACGAACAGATCGCGGCCGTGC CACAGATACCACTGTCGGATGATGGCAGCAATATGAACGGAAATGCAGCG CGATTAGCCCGCAAACGAAACTACCAAGAGGAGGAAGCCCTTCCAACGGT AGTGGTGGTGCCGACTCCCACCCCAGTAGGAAATAACGTCCAGGAAGCGC CGCCCATCAGGGAAGTTACCGCCCCACGTACTCTGCCGCCCAAAAAGTCC AAGCTGCGAGGCATTACCACGCGTCGCAACTCCCAGCTGGAGGAGGATCA TCAGCCAGTGACAACACCAGTGGCCGTCCCCATGATCGTGGACAACGCTG TGGCCGGAATGGCGAGCGAAGAGGCTGCTGCCGCCGCTGCGGCTGTTAAT AACAGCAATACGGGAATAATCCCGGAAACGGGAGTGCAAGTGGGTGTCCC AGTTGAGGGCGGCGATCCAGGTGCTCCGGCGGCACCGGGCCGCATCCTGA CCCGTCGTCGGTCCGTCCGCATGCAGCAGAACGGCAGCGGAGCAGTCGAC TACTCCACCTAAGCGCTGGCGAACCTTTTTCCAAAAAAGGGTGCACTCCA TATGAGTTCGTCAAATTGATCGTTAATTCCTGACGTTTACTTTTGTGAAT TGAGATTTCAAAACAGAGAGAGACTTCATTTTATATTTCTAACCTATCTT TTAGATTCTTTAATTTTTTTTACACATTGTCTTGTAAAATACGTTTATTA TTTCGTTTGCATGCGGCGTAGACATACATAATTCGCAAATTATTTAGAAG TCACTGCTTTACATACGAAATGCATTATGTAGAACAGTGTAAAACTTCAG CACATATATTTACAATAATACGATCGAGCTAAATGATAATGCTAAAAACT GATACACTATTTATGTTTTTTAACCACGGCATCTACTGAAAAGCTGAAAA GAAAGCTTGGTCAAAACAAAACTTGTCATTTAGCAAAATTAGGTTTTAAT TATCAACTTAAGGCATTTTTGTAATACTATGAAAGTTGTGTAAAATAATA TAAACTTGTGTTAAAATAAATTGTTAAGCATAACAAATATTTCAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fl(2)d-RA | 2577 | fl(2)d-RA | 35..2577 | 1..2543 | 12715 | 100 | Plus |
fl(2)d.a | 2480 | fl(2)d.a | 670..2480 | 733..2543 | 9040 | 99.9 | Plus |
fl(2)d-RB | 2234 | fl(2)d-RB | 429..2234 | 738..2543 | 9030 | 100 | Plus |
fl(2)d-RB | 2234 | fl(2)d-RB | 11..69 | 1..59 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9706932..9708279 | 2543..1197 | 6660 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 9711101..9711838 | 738..1 | 3690 | 100 | Minus |
chr2R | 21145070 | chr2R | 9708345..9708679 | 1197..863 | 1675 | 100 | Minus |
chr2R | 21145070 | chr2R | 9708742..9708872 | 863..733 | 640 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13819618..13820970 | 2549..1197 | 6765 | 100 | Minus |
2R | 25286936 | 2R | 13823792..13824529 | 738..1 | 3690 | 100 | Minus |
2R | 25286936 | 2R | 13821036..13821370 | 1197..863 | 1675 | 100 | Minus |
2R | 25286936 | 2R | 13821433..13821563 | 863..733 | 640 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13820817..13822169 | 2549..1197 | 6765 | 100 | Minus |
2R | 25260384 | 2R | 13824991..13825728 | 738..1 | 3690 | 100 | Minus |
2R | 25260384 | 2R | 13822235..13822569 | 1197..863 | 1675 | 100 | Minus |
2R | 25260384 | 2R | 13822632..13822762 | 863..733 | 640 | 99.2 | Minus |
3L | 28103327 | 3L | 6073399..6073466 | 612..679 | 235 | 89.7 | Plus |
X | 23527363 | X | 13531249..13531331 | 594..676 | 220 | 84.3 | Plus |
X | 23527363 | X | 13531249..13531336 | 567..654 | 200 | 81.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9706932..9708278 | 1198..2543 | 99 | <- | Minus |
chr2R | 9708345..9708678 | 864..1197 | 100 | <- | Minus |
chr2R | 9708742..9708866 | 739..863 | 100 | <- | Minus |
chr2R | 9711101..9711838 | 1..738 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 1..1611 | 402..2012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 1..1611 | 402..2012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 1..1611 | 402..2012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 1..1611 | 402..2012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 1..1611 | 402..2012 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 26..2568 | 1..2543 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 21..2563 | 1..2543 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 25..2567 | 1..2543 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 26..2568 | 1..2543 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fl(2)d-RA | 25..2567 | 1..2543 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13821036..13821369 | 864..1197 | 100 | <- | Minus |
2R | 13821433..13821557 | 739..863 | 100 | <- | Minus |
2R | 13819624..13820969 | 1198..2543 | 100 | <- | Minus |
2R | 13823792..13824529 | 1..738 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13821036..13821369 | 864..1197 | 100 | <- | Minus |
2R | 13821433..13821557 | 739..863 | 100 | <- | Minus |
2R | 13819624..13820969 | 1198..2543 | 100 | <- | Minus |
2R | 13823792..13824529 | 1..738 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13821036..13821369 | 864..1197 | 100 | <- | Minus |
2R | 13821433..13821557 | 739..863 | 100 | <- | Minus |
2R | 13819624..13820969 | 1198..2543 | 100 | <- | Minus |
2R | 13823792..13824529 | 1..738 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9707129..9708474 | 1198..2543 | 100 | <- | Minus |
arm_2R | 9708541..9708874 | 864..1197 | 100 | <- | Minus |
arm_2R | 9708938..9709062 | 739..863 | 100 | <- | Minus |
arm_2R | 9711297..9712034 | 1..738 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13820823..13822168 | 1198..2543 | 100 | <- | Minus |
2R | 13822235..13822568 | 864..1197 | 100 | <- | Minus |
2R | 13822632..13822756 | 739..863 | 100 | <- | Minus |
2R | 13824991..13825728 | 1..738 | 100 | Minus |
Translation from 401 to 2011
> LD21616.pep MSVAAMTMDDQRPCMNSYDKMPPTKYEQNLNILNSSQNSGATGGPASPTP SGLEDHHHHHHPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEA VAAAEQRQRLLEDEIENLKLEQVRMAQQCADAQRREKILMRRLANKEQEF QDYVSQIAEYKAQQAPTALALRTALLDPAVNLLFERLKKELKATKAKLEE TQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGKMTSNGRLAKLETEL AMQKSFSEEVKKSQSELDDFLQELDEDVEGMQSTILFLQQELKTTRDRIQ TLEKENAQLKQAIKDEVVAPAAATNGGTNTTINKLETIHEDACMANNPTN PDCYNGNTNNEQIAAVPQIPLSDDGSNMNGNAARLARKRNYQEEEALPTV VVVPTPTPVGNNVQEAPPIREVTAPRTLPPKKSKLRGITTRRNSQLEEDH QPVTTPVAVPMIVDNAVAGMASEEAAAAAAAVNNSNTGIIPETGVQVGVP VEGGDPGAPAAPGRILTRRRSVRMQQNGSGAVDYST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11164-PA | 532 | GF11164-PA | 1..532 | 1..536 | 1677 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22469-PA | 547 | GG22469-PA | 1..547 | 1..536 | 2134 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20869-PA | 631 | GH20869-PA | 1..631 | 1..534 | 1531 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fl(2)d-PA | 536 | CG6315-PA | 1..536 | 1..536 | 2750 | 100 | Plus |
fl(2)d-PD | 412 | CG6315-PD | 1..412 | 125..536 | 2082 | 100 | Plus |
fl(2)d-PC | 412 | CG6315-PC | 1..412 | 125..536 | 2082 | 100 | Plus |
fl(2)d-PB | 412 | CG6315-PB | 1..412 | 125..536 | 2082 | 100 | Plus |
ssp6-PB | 866 | CG6619-PB | 519..565 | 46..92 | 176 | 68.1 | Plus |
ssp6-PA | 866 | CG6619-PA | 519..565 | 46..92 | 176 | 68.1 | Plus |
CG32365-PB | 628 | CG32365-PB | 130..238 | 22..129 | 171 | 34.2 | Plus |
CG32365-PA | 628 | CG32365-PA | 130..238 | 22..129 | 171 | 34.2 | Plus |
dmrt99B-PA | 510 | CG15504-PA | 299..413 | 22..129 | 164 | 35.5 | Plus |
ssp6-PB | 866 | CG6619-PB | 517..566 | 35..92 | 159 | 58.6 | Plus |
ssp6-PA | 866 | CG6619-PA | 517..566 | 35..92 | 159 | 58.6 | Plus |
sd-PQ | 625 | CG8544-PQ | 260..319 | 56..95 | 157 | 56.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20977-PA | 601 | GI20977-PA | 163..601 | 108..534 | 1417 | 67.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16999-PA | 350 | GL16999-PA | 1..333 | 1..325 | 1148 | 81 | Plus |
Dper\GL17000-PA | 131 | GL17000-PA | 1..131 | 401..536 | 294 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19508-PA | 555 | GA19508-PA | 1..555 | 6..536 | 1539 | 66.6 | Plus |
Dpse\GA19508-PB | 429 | GA19508-PB | 1..429 | 125..536 | 1376 | 69.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20255-PA | 535 | GM20255-PA | 1..535 | 1..536 | 2753 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25741-PA | 536 | GD25741-PA | 1..536 | 1..536 | 2758 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20696-PA | 597 | GJ20696-PA | 1..597 | 1..534 | 1426 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17944-PA | 566 | GK17944-PA | 1..566 | 1..536 | 1397 | 58.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13341-PA | 540 | GE13341-PA | 1..540 | 1..536 | 2126 | 90.1 | Plus |
Translation from 401 to 2011
> LD21616.hyp MSVAAMTMDDQRPCMNSYDKMPPTKYEQNLNILNSSQNSGATGGPASPTP SGLEDHHHHHHPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEA VAAAEQRQRLLEDEIENLKLEQVRMAQQCADAQRREKILMRRLANKEQEF QDYVSQIAEYKAQQAPTALALRTALLDPAVNLLFERLKKELKATKAKLEE TQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGKMTSNGRLAKLETEL AMQKSFSEEVKKSQSELDDFLQELDEDVEGMQSTILFLQQELKTTRDRIQ TLEKENAQLKQAIKDEVVAPAAATNGGTNTTINKLETIHEDACMANNPTN PDCYNGNTNNEQIAAVPQIPLSDDGSNMNGNAARLARKRNYQEEEALPTV VVVPTPTPVGNNVQEAPPIREVTAPRTLPPKKSKLRGITTRRNSQLEEDH QPVTTPVAVPMIVDNAVAGMASEEAAAAAAAVNNSNTGIIPETGVQVGVP VEGGDPGAPAAPGRILTRRRSVRMQQNGSGAVDYST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fl(2)d-PA | 536 | CG6315-PA | 1..536 | 1..536 | 2750 | 100 | Plus |
fl(2)d-PD | 412 | CG6315-PD | 1..412 | 125..536 | 2082 | 100 | Plus |
fl(2)d-PC | 412 | CG6315-PC | 1..412 | 125..536 | 2082 | 100 | Plus |
fl(2)d-PB | 412 | CG6315-PB | 1..412 | 125..536 | 2082 | 100 | Plus |
ssp6-PB | 866 | CG6619-PB | 519..565 | 46..92 | 176 | 68.1 | Plus |