Clone LD21616 Report

Search the DGRC for LD21616

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:16
Vector:pOT2
Associated Gene/Transcriptfl(2)d-RA
Protein status:LD21616.pep: gold
Preliminary Size:2476
Sequenced Size:2561

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6315 2001-01-01 Release 2 assignment
CG6315 2001-11-29 Blastp of sequenced clone
CG6315 2003-01-01 Sim4 clustering to Release 3
fl(2)d 2008-04-29 Release 5.5 accounting
fl(2)d 2008-08-15 Release 5.9 accounting
fl(2)d 2008-12-18 5.12 accounting

Clone Sequence Records

LD21616.complete Sequence

2561 bp (2561 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069478

> LD21616.complete
CAGCAGCAAACGAGAAATCAGCTCGCAGCGCAGAAAAATTAAAAAATATC
GCCGTAAAAGTGAGCCCAACCGACCCAAAACATATGAAAAGTGTGAATTA
AAGGACAATAAAGATATAAATCATTAATTAAGCTTTGAGCAAGCGCGAAA
AGTACGCGAAATCAACGTTTTGCAAAACGTTCGCCATACGCGTCGCCATT
GGTGTGAGCGATAGCTTGCCTGTGTGTGCGTGTGGTATTGGAGGAGGTGA
GAGCGCCTGTGTGTGTGTGTGTTTGCGTGCGTGTGTGAGAGCGAGCGAGC
GGCCCCTATGAAAAGCAACAGCAACAACGCCAGCAAAGGACCCGCAACAA
CAACAACAACAACAGCAAGAGTAACAAGCACAGCGTTTTAATATCCAAAT
AATGAGTGTCGCTGCAATGACTATGGACGATCAAAGACCCTGTATGAACA
GTTACGACAAAATGCCCCCGACCAAATACGAGCAAAACCTAAATATCCTA
AACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCCCGCCTCCCCAACGCC
CTCCGGCTTGGAGGACCACCATCATCATCACCATCCGCATCCGCACCATC
ATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAACAGCAACACTTGCAG
CAGCAGCAACAACAGCAGCAGCAGCAACATGCAGCAGCTGTTGCAGAGGC
TGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCGAAGATGAGATCGAGA
ATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAATGCGCGGACGCCCAG
CGACGCGAGAAGATCCTCATGCGACGGCTGGCCAACAAGGAGCAAGAATT
CCAGGACTATGTGAGCCAAATTGCCGAGTACAAGGCCCAACAGGCGCCAA
CTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCTGCGGTCAATCTCCTG
TTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAAGGCCAAGCTGGAGGA
GACCCAGAACGAGCTGTCCGCATGGAAGTTCACGCCGGACTCTAATACCG
GCAAACGCCTAATGGCCAAGTGCCGACTGCTCTATCAGGAGAACGAGGAG
CTGGGCAAGATGACCTCCAACGGCAGACTGGCCAAGCTGGAGACCGAACT
GGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGAAATCGCAGTCGGAGT
TGGACGACTTCCTGCAGGAGCTGGACGAGGATGTGGAGGGCATGCAGAGC
ACCATTCTGTTTTTGCAGCAAGAACTAAAGACCACACGCGATCGCATACA
AACGCTTGAGAAGGAGAACGCCCAGTTGAAACAGGCCATCAAGGATGAGG
TTGTGGCTCCAGCGGCTGCCACCAACGGTGGCACCAACACGACGATAAAT
AAGCTAGAGACCATTCACGAGGACGCTTGCATGGCGAATAACCCAACGAA
TCCGGATTGTTACAATGGGAATACCAACAACGAACAGATCGCGGCCGTGC
CACAGATACCACTGTCGGATGATGGCAGCAATATGAACGGAAATGCAGCG
CGATTAGCCCGCAAACGAAACTACCAAGAGGAGGAAGCCCTTCCAACGGT
AGTGGTGGTGCCGACTCCCACCCCAGTAGGAAATAACGTCCAGGAAGCGC
CGCCCATCAGGGAAGTTACCGCCCCACGTACTCTGCCGCCCAAAAAGTCC
AAGCTGCGAGGCATTACCACGCGTCGCAACTCCCAGCTGGAGGAGGATCA
TCAGCCAGTGACAACACCAGTGGCCGTCCCCATGATCGTGGACAACGCTG
TGGCCGGAATGGCGAGCGAAGAGGCTGCTGCCGCCGCTGCGGCTGTTAAT
AACAGCAATACGGGAATAATCCCGGAAACGGGAGTGCAAGTGGGTGTCCC
AGTTGAGGGCGGCGATCCAGGTGCTCCGGCGGCACCGGGCCGCATCCTGA
CCCGTCGTCGGTCCGTCCGCATGCAGCAGAACGGCAGCGGAGCAGTCGAC
TACTCCACCTAAGCGCTGGCGAACCTTTTTCCAAAAAAGGGTGCACTCCA
TATGAGTTCGTCAAATTGATCGTTAATTCCTGACGTTTACTTTTGTGAAT
TGAGATTTCAAAACAGAGAGAGACTTCATTTTATATTTCTAACCTATCTT
TTAGATTCTTTAATTTTTTTTACACATTGTCTTGTAAAATACGTTTATTA
TTTCGTTTGCATGCGGCGTAGACATACATAATTCGCAAATTATTTAGAAG
TCACTGCTTTACATACGAAATGCATTATGTAGAACAGTGTAAAACTTCAG
CACATATATTTACAATAATACGATCGAGCTAAATGATAATGCTAAAAACT
GATACACTATTTATGTTTTTTAACCACGGCATCTACTGAAAAGCTGAAAA
GAAAGCTTGGTCAAAACAAAACTTGTCATTTAGCAAAATTAGGTTTTAAT
TATCAACTTAAGGCATTTTTGTAATACTATGAAAGTTGTGTAAAATAATA
TAAACTTGTGTTAAAATAAATTGTTAAGCATAACAAATATTTCAAAAAAA
AAAAAAAAAAA

LD21616.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
fl(2)d-RA 2577 fl(2)d-RA 35..2577 1..2543 12715 100 Plus
fl(2)d.a 2480 fl(2)d.a 670..2480 733..2543 9040 99.9 Plus
fl(2)d-RB 2234 fl(2)d-RB 429..2234 738..2543 9030 100 Plus
fl(2)d-RB 2234 fl(2)d-RB 11..69 1..59 295 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9706932..9708279 2543..1197 6660 99.8 Minus
chr2R 21145070 chr2R 9711101..9711838 738..1 3690 100 Minus
chr2R 21145070 chr2R 9708345..9708679 1197..863 1675 100 Minus
chr2R 21145070 chr2R 9708742..9708872 863..733 640 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13819618..13820970 2549..1197 6765 100 Minus
2R 25286936 2R 13823792..13824529 738..1 3690 100 Minus
2R 25286936 2R 13821036..13821370 1197..863 1675 100 Minus
2R 25286936 2R 13821433..13821563 863..733 640 99.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13820817..13822169 2549..1197 6765 100 Minus
2R 25260384 2R 13824991..13825728 738..1 3690 100 Minus
2R 25260384 2R 13822235..13822569 1197..863 1675 100 Minus
2R 25260384 2R 13822632..13822762 863..733 640 99.2 Minus
3L 28103327 3L 6073399..6073466 612..679 235 89.7 Plus
X 23527363 X 13531249..13531331 594..676 220 84.3 Plus
X 23527363 X 13531249..13531336 567..654 200 81.8 Plus
Blast to na_te.dros performed on 2019-03-16 07:48:37 has no hits.

LD21616.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:49:22 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9706932..9708278 1198..2543 99 <- Minus
chr2R 9708345..9708678 864..1197 100 <- Minus
chr2R 9708742..9708866 739..863 100 <- Minus
chr2R 9711101..9711838 1..738 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:33 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 1..1611 402..2012 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:31 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 1..1611 402..2012 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:50:49 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 1..1611 402..2012 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:51 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 1..1611 402..2012 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:00 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 1..1611 402..2012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:47 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 26..2568 1..2543 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:31 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 21..2563 1..2543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:49 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 25..2567 1..2543 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:51 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 26..2568 1..2543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:00 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 25..2567 1..2543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:22 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13821036..13821369 864..1197 100 <- Minus
2R 13821433..13821557 739..863 100 <- Minus
2R 13819624..13820969 1198..2543 100 <- Minus
2R 13823792..13824529 1..738 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:22 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13821036..13821369 864..1197 100 <- Minus
2R 13821433..13821557 739..863 100 <- Minus
2R 13819624..13820969 1198..2543 100 <- Minus
2R 13823792..13824529 1..738 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:22 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13821036..13821369 864..1197 100 <- Minus
2R 13821433..13821557 739..863 100 <- Minus
2R 13819624..13820969 1198..2543 100 <- Minus
2R 13823792..13824529 1..738 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:49 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9707129..9708474 1198..2543 100 <- Minus
arm_2R 9708541..9708874 864..1197 100 <- Minus
arm_2R 9708938..9709062 739..863 100 <- Minus
arm_2R 9711297..9712034 1..738 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:19 Download gff for LD21616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13820823..13822168 1198..2543 100 <- Minus
2R 13822235..13822568 864..1197 100 <- Minus
2R 13822632..13822756 739..863 100 <- Minus
2R 13824991..13825728 1..738 100   Minus

LD21616.pep Sequence

Translation from 401 to 2011

> LD21616.pep
MSVAAMTMDDQRPCMNSYDKMPPTKYEQNLNILNSSQNSGATGGPASPTP
SGLEDHHHHHHPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEA
VAAAEQRQRLLEDEIENLKLEQVRMAQQCADAQRREKILMRRLANKEQEF
QDYVSQIAEYKAQQAPTALALRTALLDPAVNLLFERLKKELKATKAKLEE
TQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGKMTSNGRLAKLETEL
AMQKSFSEEVKKSQSELDDFLQELDEDVEGMQSTILFLQQELKTTRDRIQ
TLEKENAQLKQAIKDEVVAPAAATNGGTNTTINKLETIHEDACMANNPTN
PDCYNGNTNNEQIAAVPQIPLSDDGSNMNGNAARLARKRNYQEEEALPTV
VVVPTPTPVGNNVQEAPPIREVTAPRTLPPKKSKLRGITTRRNSQLEEDH
QPVTTPVAVPMIVDNAVAGMASEEAAAAAAAVNNSNTGIIPETGVQVGVP
VEGGDPGAPAAPGRILTRRRSVRMQQNGSGAVDYST*

LD21616.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11164-PA 532 GF11164-PA 1..532 1..536 1677 75.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22469-PA 547 GG22469-PA 1..547 1..536 2134 83.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20869-PA 631 GH20869-PA 1..631 1..534 1531 59.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
fl(2)d-PA 536 CG6315-PA 1..536 1..536 2750 100 Plus
fl(2)d-PD 412 CG6315-PD 1..412 125..536 2082 100 Plus
fl(2)d-PC 412 CG6315-PC 1..412 125..536 2082 100 Plus
fl(2)d-PB 412 CG6315-PB 1..412 125..536 2082 100 Plus
ssp6-PB 866 CG6619-PB 519..565 46..92 176 68.1 Plus
ssp6-PA 866 CG6619-PA 519..565 46..92 176 68.1 Plus
CG32365-PB 628 CG32365-PB 130..238 22..129 171 34.2 Plus
CG32365-PA 628 CG32365-PA 130..238 22..129 171 34.2 Plus
dmrt99B-PA 510 CG15504-PA 299..413 22..129 164 35.5 Plus
ssp6-PB 866 CG6619-PB 517..566 35..92 159 58.6 Plus
ssp6-PA 866 CG6619-PA 517..566 35..92 159 58.6 Plus
sd-PQ 625 CG8544-PQ 260..319 56..95 157 56.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20977-PA 601 GI20977-PA 163..601 108..534 1417 67.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16999-PA 350 GL16999-PA 1..333 1..325 1148 81 Plus
Dper\GL17000-PA 131 GL17000-PA 1..131 401..536 294 53.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19508-PA 555 GA19508-PA 1..555 6..536 1539 66.6 Plus
Dpse\GA19508-PB 429 GA19508-PB 1..429 125..536 1376 69.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20255-PA 535 GM20255-PA 1..535 1..536 2753 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25741-PA 536 GD25741-PA 1..536 1..536 2758 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20696-PA 597 GJ20696-PA 1..597 1..534 1426 60.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17944-PA 566 GK17944-PA 1..566 1..536 1397 58.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13341-PA 540 GE13341-PA 1..540 1..536 2126 90.1 Plus

LD21616.hyp Sequence

Translation from 401 to 2011

> LD21616.hyp
MSVAAMTMDDQRPCMNSYDKMPPTKYEQNLNILNSSQNSGATGGPASPTP
SGLEDHHHHHHPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEA
VAAAEQRQRLLEDEIENLKLEQVRMAQQCADAQRREKILMRRLANKEQEF
QDYVSQIAEYKAQQAPTALALRTALLDPAVNLLFERLKKELKATKAKLEE
TQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGKMTSNGRLAKLETEL
AMQKSFSEEVKKSQSELDDFLQELDEDVEGMQSTILFLQQELKTTRDRIQ
TLEKENAQLKQAIKDEVVAPAAATNGGTNTTINKLETIHEDACMANNPTN
PDCYNGNTNNEQIAAVPQIPLSDDGSNMNGNAARLARKRNYQEEEALPTV
VVVPTPTPVGNNVQEAPPIREVTAPRTLPPKKSKLRGITTRRNSQLEEDH
QPVTTPVAVPMIVDNAVAGMASEEAAAAAAAVNNSNTGIIPETGVQVGVP
VEGGDPGAPAAPGRILTRRRSVRMQQNGSGAVDYST*

LD21616.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
fl(2)d-PA 536 CG6315-PA 1..536 1..536 2750 100 Plus
fl(2)d-PD 412 CG6315-PD 1..412 125..536 2082 100 Plus
fl(2)d-PC 412 CG6315-PC 1..412 125..536 2082 100 Plus
fl(2)d-PB 412 CG6315-PB 1..412 125..536 2082 100 Plus
ssp6-PB 866 CG6619-PB 519..565 46..92 176 68.1 Plus