Clone LD21642 Report

Search the DGRC for LD21642

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:42
Vector:pOT2
Associated Gene/Transcriptmars-RA
Protein status:LD21642.pep: gold
Preliminary Size:2859
Sequenced Size:3035

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17064 2001-01-01 Release 2 assignment
CG17064 2001-09-19 Blastp of sequenced clone
CG17064 2003-01-01 Sim4 clustering to Release 3
mars 2008-04-29 Release 5.5 accounting
mars 2008-08-15 Release 5.9 accounting
mars 2008-12-18 5.12 accounting

Clone Sequence Records

LD21642.complete Sequence

3035 bp (3035 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058511

> LD21642.complete
CAAAACAGGAGACGCTTCGCCGGAAAAGTCAGCATTACGTTTCATTCCCA
ACCGGACACTTCAGTTTGACTCGCCCATCCGTCACAGCAGTCGCCATGCA
GCGCCACAAGGAACTGTACAAGGAGCAATCGCTGGTGCTGAGTCCGCGCA
ATCACTGCCAGGAGAACAGGGATCGGTTGCAGGCGGCGCGCGCCAAAAAA
CGAGAGGATTGTTTTTATCAGAACCGCATCATCAGCGTGAGCCCGACGCC
CGTCAAAATAAAGCAATTGGCGGCGGCCCAAGCTGCTCTGACCCAGGAAA
ATGTGGCACCCAAACTGGAGAGTCCGGAGCGGCTGGACACGAAGCCCGCA
GAACTGCTGAAGGAATCCAACCCGAAGGTCTCCCGCCAGAAGCTCTACTT
ACAACGCTACATGGAGTGGAAGATAGCCAAGACCAAGGAGCATAAGCAGC
AAGACCAGAAACGTCGAGGCGCAGCCATCAATGTGCCGACAGTAAAACAA
TCAAAGGCCTTGCCCAAATCACAAACATTTCGGGTTCCCGATAATCTGGC
TTCTGCAAAGCAGAAGGAGGCGGCTCCCATGTTCCAGCCTCCCAAGCGGT
GTTCTCTCTACATGATTGCCAATCCGACGGGCAAGGGAAAAGCCGCAGAA
CCGATTAAACCTTCAATACCCAAGCCAACGTCAGCAGCAGCTCCTCCGTC
ATCCAATACCGTGGCTGCATCTTCCGCCTTGGCCAGGCATAAATCAGCTG
CTTCTGCAACAAAAATAGTGCCTGCAATTCGTCAGAACAACAATCCAGTG
GCCTTGGCCAGGCAAAAAGCAGCTGCACGACCCATTCCCAACACAACGAA
GCAAACTACCAGTGTAAGGCAGCCTGGGATTGAAGCGAAAAAGATCACTA
CCACCATACCCAGACCCACCCCAGCGACAGTCACGAAAGCGAAAACGCCA
GGCATACGACAACAGCCACCAGTGGTCAGCACAAAGCCAAGATTACCTGA
GCCGCCAGCGCCACGGACAGCTAGACTGCCCAATGTGTTGTCCAAGCCGT
TCGAGAAACCTTTAGGAAACAAGGCACCAGTGACACGACGGGCGAATGTC
GTGAAACCACAGCCTATACGTGGCGGAGGTGGTGCCGCGGCCAAGTTCAA
GGACACAGCTGGAGCGACCAGCAAGGCAGCAAGTCACTCCATACGAATGA
AGGCCACCAAGATAAAGAGCCAGTACACGAGGCTTCAGGACAACGTGCGA
AAGCTTCCTCAGCTCAAAGCCGAGTTGCTGCACGCAGCCACGCTAGATAT
ACCGCCTCTCACGCCGCTAGACGATATCCATAATCCCTTTATCGACCAGG
CCACATCAACGCAGTGCAAGTCGAACAATAGCAGCGGTCATCTTTTGGAG
GCGTTTGGCGACACCATCTTGTTGAGCCCGGTGGCACCGGTCAAAGCTGA
AGGAGAAAGTTCGGTGAAAAGGCAGTTGCTGCCGGAAGGTAAGAAAGAGG
CGTCAGGTCCGGTGGCAAAGAAAAAGTTCGACTTTACGCGTTACTCAGTG
GCGAATTCGCCGGCGGAGGACTCGCTCATCTTGGATCCTCAGCAGACGAC
GGTTAAAGAAGACACTGGAGATTCCACTTTGGTGCCAGAGGGTACAAAGA
CACCGCCACGTCGCGAATCCAATGGAATGCCCAACTATCTCAGTCCGTTT
GTTAGTGTCTCGCGGGGAAAGGTGAACTCGCGCTGTGAGAAGGAGAAACG
CAATAGCTTCTACCTGTCCAATGAGGAATCGCCCTTGGAAGTTCGCCGTG
CCATTGAATCGGTTCTGTACTTCCGACTGCAGCTGGAAAACGAGATCACG
CGCCTCCAAGCGCTTTGCGCTGAATGGGAGGCGTACAGCAAGGAGAATGA
GGCACGGCTGCAGGAAACGGGCGGCATTGACATGATCAACGTGACCATCG
GTCAAACACGTCTGCTGACCACAAAAAAGATGATGCAGTTCAGCGGCCTG
ATCGATCGTTGCGAGGCTGGAGCGACCGGCAAGAACAGTCAGCCAAACGA
TGGCAGTGAGGATTCGAAACCGGTGCAGGCTGAGGATCTGGAGGGCTGGT
GGGACATGCTGCGCCTGCAGAGCGAGAACGTGGACAAGCGTTTCGATAAC
CTGAAACGTTGGAAGGCCAACGACTGGCTGGATCCGGATGCCGTGGCCGA
GGAACCCAAACAGCCGAAGCCCAAGCCCAAGATAAGTCGCAACATGAAGA
TCAAATCGAAGGCCAAGCCGAGCAGCAATCTGCAGCAGTTCCTCCGCAAA
GCCCATGCCAACATGAAGAAGACCAAGGTGGAGGAGCCAACGCTGGAGGA
TGGCCTGCCCGCCACGTCCTCGCGCCACAGTTCGCCGCGAGTAATCGTAG
TTCGCAACCGCCGATCCTTTTCGCCCGCCCGCACAGTACTCCGCATGTCC
ACCGGCGAGGGCCGTCAGTCGATTGCGCCAAATGCGCTCCTGAAATCAGC
GATTCTTGCGGCCGCCGAGCAGAACGCTGCCAAGACGCCGCCGCCTAAGC
CGCGCACCTCCATCCTCAAGACGCCCGGCACCACGAAACGCCAGAACCGT
GGCGTGCTCTTCAGCGCCAAGAAGAGCGTACGACGATTCCAGTTCACCTA
CGAGGAGGGAAACATTAGCAACGACGAGACAGTGGGCGCCGACAAGTTGG
AGGACTGCGAGGAGGACATGTCGCTGGAAGCCTCCACGGAAAGCGGATCC
CTGGAACAGAATCCGGGAAGGGATTCCAATCAGGAGAATGAAGCAACTCC
TCGCACGTACACGCTGCGCAATCGGCGGGTGAATCTGCGTCCCTCCTCCG
AGTTTATGTAGTTTTGTCTATTGACAGTAATTGTCCGTTGTGGAATTGTT
TATACTTTTATCTTCTTAGTTTAATATTTTTTTGCGGATGCCATTAAGTG
TTAATTTATTAAGATGTTGAAAATTACATTTGGCGTTTTAAATGTTCGAC
GAGTATGTTCTGTGAAAAAAAAAAAAAAAAAAAAA

LD21642.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
mars-RB 3409 mars-RB 310..3327 1..3018 15090 100 Plus
mars-RA 3240 mars-RA 141..3158 1..3018 15090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9390248..9391849 1..1602 8010 100 Plus
chr2R 21145070 chr2R 9391906..9393318 1602..3014 7065 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13502941..13504542 1..1602 8010 100 Plus
2R 25286936 2R 13504599..13506015 1602..3018 7085 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13504140..13505741 1..1602 8010 100 Plus
2R 25260384 2R 13505798..13507214 1602..3018 7085 100 Plus
Blast to na_te.dros performed 2019-03-16 18:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 319..410 2996..2899 123 64.3 Minus

LD21642.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:53:23 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9390248..9391849 1..1602 100 -> Plus
chr2R 9391907..9393318 1603..3014 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:38 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RA 1..2766 96..2861 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:04 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RB 1..2766 96..2861 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:28 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RA 1..2766 96..2861 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:42 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RA 1..2766 96..2861 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:30 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RB 1..2766 96..2861 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:56 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RA 141..3154 1..3014 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:04 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RB 310..3323 1..3014 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:28 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RA 13..3026 1..3014 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:42 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RA 141..3154 1..3014 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:30 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
mars-RB 812..3825 1..3014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:23 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13502941..13504542 1..1602 100 -> Plus
2R 13504600..13506011 1603..3014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:23 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13502941..13504542 1..1602 100 -> Plus
2R 13504600..13506011 1603..3014 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:23 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13502941..13504542 1..1602 100 -> Plus
2R 13504600..13506011 1603..3014 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:28 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9390446..9392047 1..1602 100 -> Plus
arm_2R 9392105..9393516 1603..3014 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:36 Download gff for LD21642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13504140..13505741 1..1602 100 -> Plus
2R 13505799..13507210 1603..3014 100   Plus

LD21642.hyp Sequence

Translation from 2 to 2860

> LD21642.hyp
KQETLRRKSQHYVSFPTGHFSLTRPSVTAVAMQRHKELYKEQSLVLSPRN
HCQENRDRLQAARAKKREDCFYQNRIISVSPTPVKIKQLAAAQAALTQEN
VAPKLESPERLDTKPAELLKESNPKVSRQKLYLQRYMEWKIAKTKEHKQQ
DQKRRGAAINVPTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRC
SLYMIANPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASSALARHKSAA
SATKIVPAIRQNNNPVALARQKAAARPIPNTTKQTTSVRQPGIEAKKITT
TIPRPTPATVTKAKTPGIRQQPPVVSTKPRLPEPPAPRTARLPNVLSKPF
EKPLGNKAPVTRRANVVKPQPIRGGGGAAAKFKDTAGATSKAASHSIRMK
ATKIKSQYTRLQDNVRKLPQLKAELLHAATLDIPPLTPLDDIHNPFIDQA
TSTQCKSNNSSGHLLEAFGDTILLSPVAPVKAEGESSVKRQLLPEGKKEA
SGPVAKKKFDFTRYSVANSPAEDSLILDPQQTTVKEDTGDSTLVPEGTKT
PPRRESNGMPNYLSPFVSVSRGKVNSRCEKEKRNSFYLSNEESPLEVRRA
IESVLYFRLQLENEITRLQALCAEWEAYSKENEARLQETGGIDMINVTIG
QTRLLTTKKMMQFSGLIDRCEAGATGKNSQPNDGSEDSKPVQAEDLEGWW
DMLRLQSENVDKRFDNLKRWKANDWLDPDAVAEEPKQPKPKPKISRNMKI
KSKAKPSSNLQQFLRKAHANMKKTKVEEPTLEDGLPATSSRHSSPRVIVV
RNRRSFSPARTVLRMSTGEGRQSIAPNALLKSAILAAAEQNAAKTPPPKP
RTSILKTPGTTKRQNRGVLFSAKKSVRRFQFTYEEGNISNDETVGADKLE
DCEEDMSLEASTESGSLEQNPGRDSNQENEATPRTYTLRNRRVNLRPSSE
FM*

LD21642.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
mars-PD 921 CG17064-PD 1..921 32..952 4709 100 Plus
mars-PC 921 CG17064-PC 1..921 32..952 4709 100 Plus
mars-PB 921 CG17064-PB 1..921 32..952 4709 100 Plus
mars-PA 921 CG17064-PA 1..921 32..952 4709 100 Plus
vlc-PB 583 CG8390-PB 341..484 588..735 170 32.1 Plus

LD21642.pep Sequence

Translation from 95 to 2860

> LD21642.pep
MQRHKELYKEQSLVLSPRNHCQENRDRLQAARAKKREDCFYQNRIISVSP
TPVKIKQLAAAQAALTQENVAPKLESPERLDTKPAELLKESNPKVSRQKL
YLQRYMEWKIAKTKEHKQQDQKRRGAAINVPTVKQSKALPKSQTFRVPDN
LASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAP
PSSNTVAASSALARHKSAASATKIVPAIRQNNNPVALARQKAAARPIPNT
TKQTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGIRQQPPVVSTKPRL
PEPPAPRTARLPNVLSKPFEKPLGNKAPVTRRANVVKPQPIRGGGGAAAK
FKDTAGATSKAASHSIRMKATKIKSQYTRLQDNVRKLPQLKAELLHAATL
DIPPLTPLDDIHNPFIDQATSTQCKSNNSSGHLLEAFGDTILLSPVAPVK
AEGESSVKRQLLPEGKKEASGPVAKKKFDFTRYSVANSPAEDSLILDPQQ
TTVKEDTGDSTLVPEGTKTPPRRESNGMPNYLSPFVSVSRGKVNSRCEKE
KRNSFYLSNEESPLEVRRAIESVLYFRLQLENEITRLQALCAEWEAYSKE
NEARLQETGGIDMINVTIGQTRLLTTKKMMQFSGLIDRCEAGATGKNSQP
NDGSEDSKPVQAEDLEGWWDMLRLQSENVDKRFDNLKRWKANDWLDPDAV
AEEPKQPKPKPKISRNMKIKSKAKPSSNLQQFLRKAHANMKKTKVEEPTL
EDGLPATSSRHSSPRVIVVRNRRSFSPARTVLRMSTGEGRQSIAPNALLK
SAILAAAEQNAAKTPPPKPRTSILKTPGTTKRQNRGVLFSAKKSVRRFQF
TYEEGNISNDETVGADKLEDCEEDMSLEASTESGSLEQNPGRDSNQENEA
TPRTYTLRNRRVNLRPSSEFM*

LD21642.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13697-PA 959 GF13697-PA 1..959 1..921 2596 57.2 Plus
Dana\GF11028-PA 521 GF11028-PA 403..513 575..694 164 36.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20384-PA 909 GG20384-PA 1..909 1..921 3934 84.7 Plus
Dere\GG23178-PA 582 GG23178-PA 356..498 569..719 177 32.3 Plus
Dere\GG19263-PA 169 GG19263-PA 57..122 619..694 165 47.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23162-PA 488 GH23162-PA 86..488 513..921 1041 54.3 Plus
Dgri\GH21456-PA 647 GH21456-PA 428..551 575..704 168 32.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
mars-PD 921 CG17064-PD 1..921 1..921 4709 100 Plus
mars-PC 921 CG17064-PC 1..921 1..921 4709 100 Plus
mars-PB 921 CG17064-PB 1..921 1..921 4709 100 Plus
mars-PA 921 CG17064-PA 1..921 1..921 4709 100 Plus
vlc-PB 583 CG8390-PB 341..484 557..704 170 32.1 Plus
vlc-PI 605 CG8390-PI 363..506 557..704 170 32.1 Plus
vlc-PH 605 CG8390-PH 363..506 557..704 170 32.1 Plus
vlc-PG 605 CG8390-PG 363..506 557..704 170 32.1 Plus
vlc-PF 605 CG8390-PF 363..506 557..704 170 32.1 Plus
vlc-PE 605 CG8390-PE 363..506 557..704 170 32.1 Plus
vlc-PC 605 CG8390-PC 363..506 557..704 170 32.1 Plus
vlc-PA 605 CG8390-PA 363..506 557..704 170 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18332-PA 525 GI18332-PA 157..525 559..921 992 55.5 Plus
Dmoj\GI19933-PA 628 GI19933-PA 407..527 565..694 178 33.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17404-PA 882 GL17404-PA 1..882 1..921 2100 52.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14307-PA 882 GA14307-PA 1..882 1..921 2101 53 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21472-PA 929 GM21472-PA 1..929 1..921 4439 93.1 Plus
Dsec\GM16518-PA 586 GM16518-PA 409..485 619..704 158 37.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19758-PA 636 GJ19758-PA 160..636 419..921 1132 50.2 Plus
Dvir\vlc-PA 632 GJ15100-PA 428..550 569..697 177 34.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15960-PA 957 GK15960-PA 5..957 1..921 1610 45.5 Plus
Dwil\vlc-PA 624 GK10764-PA 407..543 575..715 186 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12546-PA 923 GE12546-PA 1..923 1..921 4061 85.4 Plus
Dyak\GE20549-PA 620 GE20549-PA 402..551 575..727 179 33.1 Plus
Dyak\GE15882-PA 124 GE15882-PA 58..123 619..694 146 42.1 Plus