BDGP Sequence Production Resources |
Search the DGRC for LD21642
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 216 |
Well: | 42 |
Vector: | pOT2 |
Associated Gene/Transcript | mars-RA |
Protein status: | LD21642.pep: gold |
Preliminary Size: | 2859 |
Sequenced Size: | 3035 |
Gene | Date | Evidence |
---|---|---|
CG17064 | 2001-01-01 | Release 2 assignment |
CG17064 | 2001-09-19 | Blastp of sequenced clone |
CG17064 | 2003-01-01 | Sim4 clustering to Release 3 |
mars | 2008-04-29 | Release 5.5 accounting |
mars | 2008-08-15 | Release 5.9 accounting |
mars | 2008-12-18 | 5.12 accounting |
3035 bp (3035 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058511
> LD21642.complete CAAAACAGGAGACGCTTCGCCGGAAAAGTCAGCATTACGTTTCATTCCCA ACCGGACACTTCAGTTTGACTCGCCCATCCGTCACAGCAGTCGCCATGCA GCGCCACAAGGAACTGTACAAGGAGCAATCGCTGGTGCTGAGTCCGCGCA ATCACTGCCAGGAGAACAGGGATCGGTTGCAGGCGGCGCGCGCCAAAAAA CGAGAGGATTGTTTTTATCAGAACCGCATCATCAGCGTGAGCCCGACGCC CGTCAAAATAAAGCAATTGGCGGCGGCCCAAGCTGCTCTGACCCAGGAAA ATGTGGCACCCAAACTGGAGAGTCCGGAGCGGCTGGACACGAAGCCCGCA GAACTGCTGAAGGAATCCAACCCGAAGGTCTCCCGCCAGAAGCTCTACTT ACAACGCTACATGGAGTGGAAGATAGCCAAGACCAAGGAGCATAAGCAGC AAGACCAGAAACGTCGAGGCGCAGCCATCAATGTGCCGACAGTAAAACAA TCAAAGGCCTTGCCCAAATCACAAACATTTCGGGTTCCCGATAATCTGGC TTCTGCAAAGCAGAAGGAGGCGGCTCCCATGTTCCAGCCTCCCAAGCGGT GTTCTCTCTACATGATTGCCAATCCGACGGGCAAGGGAAAAGCCGCAGAA CCGATTAAACCTTCAATACCCAAGCCAACGTCAGCAGCAGCTCCTCCGTC ATCCAATACCGTGGCTGCATCTTCCGCCTTGGCCAGGCATAAATCAGCTG CTTCTGCAACAAAAATAGTGCCTGCAATTCGTCAGAACAACAATCCAGTG GCCTTGGCCAGGCAAAAAGCAGCTGCACGACCCATTCCCAACACAACGAA GCAAACTACCAGTGTAAGGCAGCCTGGGATTGAAGCGAAAAAGATCACTA CCACCATACCCAGACCCACCCCAGCGACAGTCACGAAAGCGAAAACGCCA GGCATACGACAACAGCCACCAGTGGTCAGCACAAAGCCAAGATTACCTGA GCCGCCAGCGCCACGGACAGCTAGACTGCCCAATGTGTTGTCCAAGCCGT TCGAGAAACCTTTAGGAAACAAGGCACCAGTGACACGACGGGCGAATGTC GTGAAACCACAGCCTATACGTGGCGGAGGTGGTGCCGCGGCCAAGTTCAA GGACACAGCTGGAGCGACCAGCAAGGCAGCAAGTCACTCCATACGAATGA AGGCCACCAAGATAAAGAGCCAGTACACGAGGCTTCAGGACAACGTGCGA AAGCTTCCTCAGCTCAAAGCCGAGTTGCTGCACGCAGCCACGCTAGATAT ACCGCCTCTCACGCCGCTAGACGATATCCATAATCCCTTTATCGACCAGG CCACATCAACGCAGTGCAAGTCGAACAATAGCAGCGGTCATCTTTTGGAG GCGTTTGGCGACACCATCTTGTTGAGCCCGGTGGCACCGGTCAAAGCTGA AGGAGAAAGTTCGGTGAAAAGGCAGTTGCTGCCGGAAGGTAAGAAAGAGG CGTCAGGTCCGGTGGCAAAGAAAAAGTTCGACTTTACGCGTTACTCAGTG GCGAATTCGCCGGCGGAGGACTCGCTCATCTTGGATCCTCAGCAGACGAC GGTTAAAGAAGACACTGGAGATTCCACTTTGGTGCCAGAGGGTACAAAGA CACCGCCACGTCGCGAATCCAATGGAATGCCCAACTATCTCAGTCCGTTT GTTAGTGTCTCGCGGGGAAAGGTGAACTCGCGCTGTGAGAAGGAGAAACG CAATAGCTTCTACCTGTCCAATGAGGAATCGCCCTTGGAAGTTCGCCGTG CCATTGAATCGGTTCTGTACTTCCGACTGCAGCTGGAAAACGAGATCACG CGCCTCCAAGCGCTTTGCGCTGAATGGGAGGCGTACAGCAAGGAGAATGA GGCACGGCTGCAGGAAACGGGCGGCATTGACATGATCAACGTGACCATCG GTCAAACACGTCTGCTGACCACAAAAAAGATGATGCAGTTCAGCGGCCTG ATCGATCGTTGCGAGGCTGGAGCGACCGGCAAGAACAGTCAGCCAAACGA TGGCAGTGAGGATTCGAAACCGGTGCAGGCTGAGGATCTGGAGGGCTGGT GGGACATGCTGCGCCTGCAGAGCGAGAACGTGGACAAGCGTTTCGATAAC CTGAAACGTTGGAAGGCCAACGACTGGCTGGATCCGGATGCCGTGGCCGA GGAACCCAAACAGCCGAAGCCCAAGCCCAAGATAAGTCGCAACATGAAGA TCAAATCGAAGGCCAAGCCGAGCAGCAATCTGCAGCAGTTCCTCCGCAAA GCCCATGCCAACATGAAGAAGACCAAGGTGGAGGAGCCAACGCTGGAGGA TGGCCTGCCCGCCACGTCCTCGCGCCACAGTTCGCCGCGAGTAATCGTAG TTCGCAACCGCCGATCCTTTTCGCCCGCCCGCACAGTACTCCGCATGTCC ACCGGCGAGGGCCGTCAGTCGATTGCGCCAAATGCGCTCCTGAAATCAGC GATTCTTGCGGCCGCCGAGCAGAACGCTGCCAAGACGCCGCCGCCTAAGC CGCGCACCTCCATCCTCAAGACGCCCGGCACCACGAAACGCCAGAACCGT GGCGTGCTCTTCAGCGCCAAGAAGAGCGTACGACGATTCCAGTTCACCTA CGAGGAGGGAAACATTAGCAACGACGAGACAGTGGGCGCCGACAAGTTGG AGGACTGCGAGGAGGACATGTCGCTGGAAGCCTCCACGGAAAGCGGATCC CTGGAACAGAATCCGGGAAGGGATTCCAATCAGGAGAATGAAGCAACTCC TCGCACGTACACGCTGCGCAATCGGCGGGTGAATCTGCGTCCCTCCTCCG AGTTTATGTAGTTTTGTCTATTGACAGTAATTGTCCGTTGTGGAATTGTT TATACTTTTATCTTCTTAGTTTAATATTTTTTTGCGGATGCCATTAAGTG TTAATTTATTAAGATGTTGAAAATTACATTTGGCGTTTTAAATGTTCGAC GAGTATGTTCTGTGAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 319..410 | 2996..2899 | 123 | 64.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9390248..9391849 | 1..1602 | 100 | -> | Plus |
chr2R | 9391907..9393318 | 1603..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RA | 1..2766 | 96..2861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RB | 1..2766 | 96..2861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RA | 1..2766 | 96..2861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RA | 1..2766 | 96..2861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RB | 1..2766 | 96..2861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RA | 141..3154 | 1..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RB | 310..3323 | 1..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RA | 13..3026 | 1..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RA | 141..3154 | 1..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mars-RB | 812..3825 | 1..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13502941..13504542 | 1..1602 | 100 | -> | Plus |
2R | 13504600..13506011 | 1603..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13502941..13504542 | 1..1602 | 100 | -> | Plus |
2R | 13504600..13506011 | 1603..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13502941..13504542 | 1..1602 | 100 | -> | Plus |
2R | 13504600..13506011 | 1603..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9390446..9392047 | 1..1602 | 100 | -> | Plus |
arm_2R | 9392105..9393516 | 1603..3014 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13504140..13505741 | 1..1602 | 100 | -> | Plus |
2R | 13505799..13507210 | 1603..3014 | 100 | Plus |
Translation from 2 to 2860
> LD21642.hyp KQETLRRKSQHYVSFPTGHFSLTRPSVTAVAMQRHKELYKEQSLVLSPRN HCQENRDRLQAARAKKREDCFYQNRIISVSPTPVKIKQLAAAQAALTQEN VAPKLESPERLDTKPAELLKESNPKVSRQKLYLQRYMEWKIAKTKEHKQQ DQKRRGAAINVPTVKQSKALPKSQTFRVPDNLASAKQKEAAPMFQPPKRC SLYMIANPTGKGKAAEPIKPSIPKPTSAAAPPSSNTVAASSALARHKSAA SATKIVPAIRQNNNPVALARQKAAARPIPNTTKQTTSVRQPGIEAKKITT TIPRPTPATVTKAKTPGIRQQPPVVSTKPRLPEPPAPRTARLPNVLSKPF EKPLGNKAPVTRRANVVKPQPIRGGGGAAAKFKDTAGATSKAASHSIRMK ATKIKSQYTRLQDNVRKLPQLKAELLHAATLDIPPLTPLDDIHNPFIDQA TSTQCKSNNSSGHLLEAFGDTILLSPVAPVKAEGESSVKRQLLPEGKKEA SGPVAKKKFDFTRYSVANSPAEDSLILDPQQTTVKEDTGDSTLVPEGTKT PPRRESNGMPNYLSPFVSVSRGKVNSRCEKEKRNSFYLSNEESPLEVRRA IESVLYFRLQLENEITRLQALCAEWEAYSKENEARLQETGGIDMINVTIG QTRLLTTKKMMQFSGLIDRCEAGATGKNSQPNDGSEDSKPVQAEDLEGWW DMLRLQSENVDKRFDNLKRWKANDWLDPDAVAEEPKQPKPKPKISRNMKI KSKAKPSSNLQQFLRKAHANMKKTKVEEPTLEDGLPATSSRHSSPRVIVV RNRRSFSPARTVLRMSTGEGRQSIAPNALLKSAILAAAEQNAAKTPPPKP RTSILKTPGTTKRQNRGVLFSAKKSVRRFQFTYEEGNISNDETVGADKLE DCEEDMSLEASTESGSLEQNPGRDSNQENEATPRTYTLRNRRVNLRPSSE FM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mars-PD | 921 | CG17064-PD | 1..921 | 32..952 | 4709 | 100 | Plus |
mars-PC | 921 | CG17064-PC | 1..921 | 32..952 | 4709 | 100 | Plus |
mars-PB | 921 | CG17064-PB | 1..921 | 32..952 | 4709 | 100 | Plus |
mars-PA | 921 | CG17064-PA | 1..921 | 32..952 | 4709 | 100 | Plus |
vlc-PB | 583 | CG8390-PB | 341..484 | 588..735 | 170 | 32.1 | Plus |
Translation from 95 to 2860
> LD21642.pep MQRHKELYKEQSLVLSPRNHCQENRDRLQAARAKKREDCFYQNRIISVSP TPVKIKQLAAAQAALTQENVAPKLESPERLDTKPAELLKESNPKVSRQKL YLQRYMEWKIAKTKEHKQQDQKRRGAAINVPTVKQSKALPKSQTFRVPDN LASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAP PSSNTVAASSALARHKSAASATKIVPAIRQNNNPVALARQKAAARPIPNT TKQTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGIRQQPPVVSTKPRL PEPPAPRTARLPNVLSKPFEKPLGNKAPVTRRANVVKPQPIRGGGGAAAK FKDTAGATSKAASHSIRMKATKIKSQYTRLQDNVRKLPQLKAELLHAATL DIPPLTPLDDIHNPFIDQATSTQCKSNNSSGHLLEAFGDTILLSPVAPVK AEGESSVKRQLLPEGKKEASGPVAKKKFDFTRYSVANSPAEDSLILDPQQ TTVKEDTGDSTLVPEGTKTPPRRESNGMPNYLSPFVSVSRGKVNSRCEKE KRNSFYLSNEESPLEVRRAIESVLYFRLQLENEITRLQALCAEWEAYSKE NEARLQETGGIDMINVTIGQTRLLTTKKMMQFSGLIDRCEAGATGKNSQP NDGSEDSKPVQAEDLEGWWDMLRLQSENVDKRFDNLKRWKANDWLDPDAV AEEPKQPKPKPKISRNMKIKSKAKPSSNLQQFLRKAHANMKKTKVEEPTL EDGLPATSSRHSSPRVIVVRNRRSFSPARTVLRMSTGEGRQSIAPNALLK SAILAAAEQNAAKTPPPKPRTSILKTPGTTKRQNRGVLFSAKKSVRRFQF TYEEGNISNDETVGADKLEDCEEDMSLEASTESGSLEQNPGRDSNQENEA TPRTYTLRNRRVNLRPSSEFM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13697-PA | 959 | GF13697-PA | 1..959 | 1..921 | 2596 | 57.2 | Plus |
Dana\GF11028-PA | 521 | GF11028-PA | 403..513 | 575..694 | 164 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20384-PA | 909 | GG20384-PA | 1..909 | 1..921 | 3934 | 84.7 | Plus |
Dere\GG23178-PA | 582 | GG23178-PA | 356..498 | 569..719 | 177 | 32.3 | Plus |
Dere\GG19263-PA | 169 | GG19263-PA | 57..122 | 619..694 | 165 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23162-PA | 488 | GH23162-PA | 86..488 | 513..921 | 1041 | 54.3 | Plus |
Dgri\GH21456-PA | 647 | GH21456-PA | 428..551 | 575..704 | 168 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mars-PD | 921 | CG17064-PD | 1..921 | 1..921 | 4709 | 100 | Plus |
mars-PC | 921 | CG17064-PC | 1..921 | 1..921 | 4709 | 100 | Plus |
mars-PB | 921 | CG17064-PB | 1..921 | 1..921 | 4709 | 100 | Plus |
mars-PA | 921 | CG17064-PA | 1..921 | 1..921 | 4709 | 100 | Plus |
vlc-PB | 583 | CG8390-PB | 341..484 | 557..704 | 170 | 32.1 | Plus |
vlc-PI | 605 | CG8390-PI | 363..506 | 557..704 | 170 | 32.1 | Plus |
vlc-PH | 605 | CG8390-PH | 363..506 | 557..704 | 170 | 32.1 | Plus |
vlc-PG | 605 | CG8390-PG | 363..506 | 557..704 | 170 | 32.1 | Plus |
vlc-PF | 605 | CG8390-PF | 363..506 | 557..704 | 170 | 32.1 | Plus |
vlc-PE | 605 | CG8390-PE | 363..506 | 557..704 | 170 | 32.1 | Plus |
vlc-PC | 605 | CG8390-PC | 363..506 | 557..704 | 170 | 32.1 | Plus |
vlc-PA | 605 | CG8390-PA | 363..506 | 557..704 | 170 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18332-PA | 525 | GI18332-PA | 157..525 | 559..921 | 992 | 55.5 | Plus |
Dmoj\GI19933-PA | 628 | GI19933-PA | 407..527 | 565..694 | 178 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17404-PA | 882 | GL17404-PA | 1..882 | 1..921 | 2100 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14307-PA | 882 | GA14307-PA | 1..882 | 1..921 | 2101 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21472-PA | 929 | GM21472-PA | 1..929 | 1..921 | 4439 | 93.1 | Plus |
Dsec\GM16518-PA | 586 | GM16518-PA | 409..485 | 619..704 | 158 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19758-PA | 636 | GJ19758-PA | 160..636 | 419..921 | 1132 | 50.2 | Plus |
Dvir\vlc-PA | 632 | GJ15100-PA | 428..550 | 569..697 | 177 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15960-PA | 957 | GK15960-PA | 5..957 | 1..921 | 1610 | 45.5 | Plus |
Dwil\vlc-PA | 624 | GK10764-PA | 407..543 | 575..715 | 186 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12546-PA | 923 | GE12546-PA | 1..923 | 1..921 | 4061 | 85.4 | Plus |
Dyak\GE20549-PA | 620 | GE20549-PA | 402..551 | 575..727 | 179 | 33.1 | Plus |
Dyak\GE15882-PA | 124 | GE15882-PA | 58..123 | 619..694 | 146 | 42.1 | Plus |