Clone LD21659 Report

Search the DGRC for LD21659

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:59
Vector:pOT2
Associated Gene/TranscriptCG14722-RA
Protein status:LD21659.pep: gold
Preliminary Size:2086
Sequenced Size:1880

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14722 2001-01-01 Release 2 assignment
CG14722 2001-11-29 Blastp of sequenced clone
CG14722 2003-01-01 Sim4 clustering to Release 3
CG14722 2008-04-29 Release 5.5 accounting
CG14722 2008-08-15 Release 5.9 accounting
CG14722 2008-12-18 5.12 accounting

Clone Sequence Records

LD21659.complete Sequence

1880 bp (1880 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069480

> LD21659.complete
CCAAACAATATCCAAACGTGGTAAATAAAAGCGGATATTTTCGGAGCTTG
GACTTGCAATATTATGCACACACATAACAACTTTAAAACCCCCTCCGACG
AAGACGAACTAGATGATCTGGACGAGGACATGGTGGTGGGAGTAATAGCG
GAAATCGAACAGGAGGTGCTGAACGAGTCGGACAGCGACAACGACGAATA
TGACCTGGTAGACATGGGTGCTCCAGTGCCGGATAACGATGGCGACATTA
GTTACGAAGGCAACGATAGTAGCAGCAGCGATGACAGTTTCGATCCAAAT
GCAGCGGACTCCGATTCAGATGATTCAATGCTCGACGAGGCGGGTGGTGT
CACCGCCGGAGGAGCAACGAGTGCAAAGAAACGCAAGGATGACGATAATC
CATCGGGCAGCAACAAGCAACCAGAAGCCACCTTCGACTTGGACGAGGAC
GACGAAACAGACGAGACTGTACGTGCCATGATAGCAGCCATAAAGAAGCC
ACGCAGTTCCCCTCCAGAGATTAAGCTGGAAGACTTTATAACAGATATCT
GCTTTCATCCGGATCGCGACATCATCGCCTTGGCCACAATAATCGGGGAT
GTACATTTGTACGAGTATGACAACGAGGCTAACAAGCTGCTGCGCACTAT
TGAGGTTCATTCCAAAGCATGCCGCGATGTGGAGTTCACAGAGGATGGGC
GCTTCCTGCTCACCTGCTCCAAAGACAAGTGCGTGATGGTCACCGATATG
GAAACGGAGAAACTAAAAAAGCTATACGAGACGGCCCACGATGATGCCAT
CAACACGCTGCACGTTCTGAATGAAAATCTCTTTGCCTCGGGCGATGATG
CCGGTACGGTCAAGCTGTGGGATTTGCGCACCAAGAACGCCATCTTCGAG
CTAAAAGAACTGGAAGATCAGATCACCCAGCTGACGACTAACGAGCAAAG
CAAGCTTCTGCTGGCCACCAGTGCCGATGGCTACCTGACTACATTTAATA
TATCCGCACGGAAGATGTACGTGCAATCGGAGCCGTACGAGGAGGAGCTG
AACTGCATGGGGGTCTACCGCGGTGACTCCAAGCTGGTGGTTGGTACCTC
CAAGGGTCGCTTGTACACCTACAACTGGGGCCAATTTGGGTACCACTGCG
ACATGTATCCGGGCATCAAGAGCCCCATTAGTCTAATGATCCCCATCACA
GACCGGATTGCTTGCGTCGCCGGAGAGGATGGAAACATTCGAGCTTGTCA
CATCGCTCCGTATCGTAATCTCGGCGTTGTGGGACAGCATAACATGCCCA
TCGAATCGTTAGACGTGAATGCCAGCGGTGAGCTCATCGCATCATCCTCG
CACAACAACGACGTGCGATTCTGGAATGTAAAGTATTTCGAGGACTTTGG
AGATATCAAGTACAATGAGAAACACAATGCCTACAAGGAGCAGCGTCACA
ATCTGCCCTCCTCAAAATGCAGCAATGCATCTGACTTTTTTTCCGACTTG
ACCAAAGAGAACGCGGATGGTGATGATGATCCGGGCGCTGGACCCAGTAA
TATGGCCTAGAACGATATATTTGCTAGCAATGATTTATAGTTGGTGGGTC
AATGTGAGGCGATTCTACAAACACTTCTGTTTACATGAATTAATGCAATG
CTTAATCTAATGACTTTTATGCAGTAGTGTATATTCACAGATTTATTAAT
AGTAAATGAATGAATTGACCCATCAAGATAGAACCTCTTTGAAACCGTCA
AAACGTAGTAGCTACCCCAATCCCTAATATGTTGGACGAAGATTTTACAC
AAAGTTTCACAATGAAATGTTATTGATAATAGAACTGATTTAAAATAAAA
TATGTAAACCCCAAAAAAAAAAAAAAAAAA

LD21659.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14722-RA 2177 CG14722-RA 261..2135 1..1875 9330 99.8 Plus
CG14722.a 2023 CG14722.a 230..1822 1..1593 7965 100 Plus
CG14722.a 2023 CG14722.a 1822..2023 1674..1875 965 98.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7567756..7569546 72..1862 8955 100 Plus
chr3R 27901430 chr3R 7567610..7567680 1..71 355 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11742237..11744040 72..1875 8975 99.8 Plus
3R 32079331 3R 11742091..11742161 1..71 355 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11483068..11484871 72..1875 8975 99.8 Plus
3R 31820162 3R 11482922..11482992 1..71 355 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:05:08 has no hits.

LD21659.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:06:24 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7567610..7567680 1..71 100 -> Plus
chr3R 7567756..7569546 72..1862 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:40 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 1..1497 64..1560 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:21 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 1..1497 64..1560 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:14 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 1..1497 64..1560 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:38 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 1..1497 64..1560 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:36 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 1..1497 64..1560 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:34 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 230..2091 1..1862 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:20 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 230..2091 1..1862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:14 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 202..2063 1..1862 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:38 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 230..2091 1..1862 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:36 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
CG14722-RA 202..2063 1..1862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:24 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11742091..11742161 1..71 100 -> Plus
3R 11742237..11744027 72..1862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:24 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11742091..11742161 1..71 100 -> Plus
3R 11742237..11744027 72..1862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:24 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11742091..11742161 1..71 100 -> Plus
3R 11742237..11744027 72..1862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:14 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7567813..7567883 1..71 100 -> Plus
arm_3R 7567959..7569749 72..1862 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:06 Download gff for LD21659.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11483068..11484858 72..1862 100   Plus
3R 11482922..11482992 1..71 100 -> Plus

LD21659.pep Sequence

Translation from 63 to 1559

> LD21659.pep
MHTHNNFKTPSDEDELDDLDEDMVVGVIAEIEQEVLNESDSDNDEYDLVD
MGAPVPDNDGDISYEGNDSSSSDDSFDPNAADSDSDDSMLDEAGGVTAGG
ATSAKKRKDDDNPSGSNKQPEATFDLDEDDETDETVRAMIAAIKKPRSSP
PEIKLEDFITDICFHPDRDIIALATIIGDVHLYEYDNEANKLLRTIEVHS
KACRDVEFTEDGRFLLTCSKDKCVMVTDMETEKLKKLYETAHDDAINTLH
VLNENLFASGDDAGTVKLWDLRTKNAIFELKELEDQITQLTTNEQSKLLL
ATSADGYLTTFNISARKMYVQSEPYEEELNCMGVYRGDSKLVVGTSKGRL
YTYNWGQFGYHCDMYPGIKSPISLMIPITDRIACVAGEDGNIRACHIAPY
RNLGVVGQHNMPIESLDVNASGELIASSSHNNDVRFWNVKYFEDFGDIKY
NEKHNAYKEQRHNLPSSKCSNASDFFSDLTKENADGDDDPGAGPSNMA*

LD21659.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18399-PA 481 GF18399-PA 1..479 1..489 2141 81.6 Plus
Dana\GF16426-PA 633 GF16426-PA 53..168 202..316 158 31 Plus
Dana\GF11669-PA 362 GF11669-PA 76..226 159..311 155 27.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18443-PA 498 GG18443-PA 1..498 1..498 2282 94.6 Plus
Dere\GG12053-PA 622 GG12053-PA 53..200 205..348 167 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23127-PA 503 GH23127-PA 1..502 1..497 2031 79.7 Plus
Dgri\GH18094-PA 647 GH18094-PA 57..209 202..350 156 29.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14722-PA 498 CG14722-PA 1..498 1..498 2633 100 Plus
CG1523-PA 621 CG1523-PA 53..165 205..316 166 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10299-PA 507 GI10299-PA 2..486 1..483 2066 82 Plus
Dmoj\GI10526-PA 614 GI10526-PA 54..206 202..350 164 30.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12389-PA 503 GL12389-PA 1..503 1..498 1996 80.1 Plus
Dper\GL13687-PA 621 GL13687-PA 47..200 199..348 171 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13204-PA 503 GA13204-PA 1..503 1..498 2005 80.5 Plus
Dpse\GA13587-PA 621 GA13587-PA 47..200 199..348 172 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23977-PA 337 GM23977-PA 1..335 1..335 1717 97.9 Plus
Dsec\GM23978-PA 135 GM23978-PA 1..135 364..498 712 96.3 Plus
Dsec\GM12282-PA 621 GM12282-PA 53..200 205..348 163 31.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18783-PA 498 GD18783-PA 1..498 1..498 2611 97.8 Plus
Dsim\GD18016-PA 621 GD18016-PA 53..200 205..348 167 31.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10153-PA 504 GJ10153-PA 1..503 1..497 1979 80.5 Plus
Dvir\GJ24178-PA 623 GJ24178-PA 57..234 205..374 154 28.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12179-PA 504 GK12179-PA 1..502 1..496 1881 76.8 Plus
Dwil\GK10983-PA 609 GK10983-PA 47..200 199..348 172 31.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24201-PA 499 GE24201-PA 1..499 1..498 2319 94.4 Plus
Dyak\GE10493-PA 623 GE10493-PA 53..202 205..350 167 31.4 Plus

LD21659.hyp Sequence

Translation from 63 to 1559

> LD21659.hyp
MHTHNNFKTPSDEDELDDLDEDMVVGVIAEIEQEVLNESDSDNDEYDLVD
MGAPVPDNDGDISYEGNDSSSSDDSFDPNAADSDSDDSMLDEAGGVTAGG
ATSAKKRKDDDNPSGSNKQPEATFDLDEDDETDETVRAMIAAIKKPRSSP
PEIKLEDFITDICFHPDRDIIALATIIGDVHLYEYDNEANKLLRTIEVHS
KACRDVEFTEDGRFLLTCSKDKCVMVTDMETEKLKKLYETAHDDAINTLH
VLNENLFASGDDAGTVKLWDLRTKNAIFELKELEDQITQLTTNEQSKLLL
ATSADGYLTTFNISARKMYVQSEPYEEELNCMGVYRGDSKLVVGTSKGRL
YTYNWGQFGYHCDMYPGIKSPISLMIPITDRIACVAGEDGNIRACHIAPY
RNLGVVGQHNMPIESLDVNASGELIASSSHNNDVRFWNVKYFEDFGDIKY
NEKHNAYKEQRHNLPSSKCSNASDFFSDLTKENADGDDDPGAGPSNMA*

LD21659.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14722-PA 498 CG14722-PA 1..498 1..498 2633 100 Plus
CG1523-PA 621 CG1523-PA 53..165 205..316 166 32.7 Plus