Clone LD21662 Report

Search the DGRC for LD21662

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:62
Vector:pOT2
Associated Gene/TranscriptCG4452-RA
Protein status:LD21662.pep: gold
Preliminary Size:1785
Sequenced Size:1623

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4452 2001-01-01 Release 2 assignment
CG4452 2001-11-29 Blastp of sequenced clone
CG4452 2003-01-01 Sim4 clustering to Release 3
CG4452 2008-04-29 Release 5.5 accounting
CG4452 2008-08-15 Release 5.9 accounting
CG4452 2008-12-18 5.12 accounting

Clone Sequence Records

LD21662.complete Sequence

1623 bp (1623 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069481

> LD21662.complete
AAACAACAAGTTTTTTTTAAGAATCCAGCACAAAACAGAGAAAACTCGTC
ACGACAACAAAACCGCCGAACGCCAAACAGAATGAGTGGAAAAGTTTTAT
TCGCCTGCTCCAAGTGTTTCTCGCGCCATCTGTACGAGGAGCTCTCCTCC
GGCCAGCAACTATGCAAGGGCTGCCGCGGCTCTACCTCAGTTGGTAAATG
TACTTACTGCCGTTCGGAGTTTCAACCCGCCACCAAATCACAGAGTGCCT
GCAAGAAGTGCGAACATTATCTGGGGAAGTACGGCAAACCCAGTGCCTGC
GAGTGCTGCAAGATTGTGGCCGCCTTCGGAGGATCCAAGTGCATGCGATG
CGCCAGCTACGAGGCAAAGTACGGACCGCCGGTGCAGTGCGATGAATGCA
AGCTGCGATCAGCCTTTGACAGGCGCGACGAGAACAAAAAGGTCAATGGC
AAATTGCTTTGCTGGCTGTGTGCCTGCGCCTACAAGCGAGCTCTACTCAA
GGCACAGCAGGAGGGCCGTATACCGATGTCCAAGAAGAGGCCACACGAGA
AGACCTCGTCCTCGCACAGAGACAGCGCTGCGGCCAAGAAGCCATCGCGC
AACGAGCTGGGCAAGAGCGGCAGCGGTGCCAATAATAGCGGCGTGAATGC
CGTAAGCGGAGCTGGATTGGATCTACCTGATAAGATCTCACGCGGAAATG
GTGGTAATGGGACCATTGCAGCGCCTGCTGCCATCACCGTGGACACCAAT
TCGTCTGATCATGTGGTTGCTATAACATACCTAAAGGAACGCATCGCCAG
TCTGGAGAAGCGCCTGAATCAAAAAGACAAAGAGCTGCTCGAAAAAGACA
AGCAGCTGACCGAACTGAAGGGCAAAAACTTCGAGAAGGAGAACGACATG
CGCAACCGGCTGAAGGAAGTGGAGCGTCTGCACGACATGAAGGTGGACAA
CTTGAACCGCAAGATCGCCAGTGTGCTCAAGGAGCTGGCCGTGCTTAAGA
AGAGCAGCAACAAAAAGACCGCTGCCATTAGCAAGGCAGAAAAGGAGATC
ATCAAACGTGAGAACTTATCGCCCAAGGAGGAAATTCTGGCGACAACGGG
GCCGGAAAAACCGACCAAGGCCTCGTCGGAGCCCGCCGATCTGGACAAGG
ACGAAAAGAGTCGCGATCGAGACGAGGAACGCAGCGAGCAGGGGGATAGG
GCTAGTGTGCGGTCACGATCCGCCTCCAGCAGCCCCACGCCCTCGTCCAA
CTGAGAGACGATGACTTCCAGCTGCAGGAGCGGCATGCCAGGATACACGA
TCCATAAACTCTGGCTGCCGCGCCCTTTTAGTTTTTCGCTATACAAATTT
ATATTTTTGTACTTCTGCTTTAATTGTAATATAGTTTTACAAGTTTGTTT
CATATCACTCTTTTTATGTCGCTCATCCCTGCTACGCGAATCCTGTTCCA
ACTCCCTCCTTCCAAATGTAACCCAATCATCAGTTAGAAAATGTAATTCG
AATTCAACTTAACGAATTCTTCTTTAGTTTAATTCACGATGGAACAACAC
AAAACCGAAGCATTGTTTACATCTTAAGAAATATACAAAGTTGGGAAAGA
ACCAAAAAAAAAAAAAAAAAAAA

LD21662.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-RA 1755 CG4452-RA 119..1724 1..1606 8030 100 Plus
CG4452.a 1730 CG4452.a 119..1728 1..1606 7965 99.7 Plus
CG4452-RB 1634 CG4452-RB 465..1630 441..1606 5830 100 Plus
CG4452-RB 1634 CG4452-RB 119..465 1..347 1735 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9361429..9362179 853..1603 3725 99.7 Plus
chr3L 24539361 chr3L 9360785..9361200 440..855 2080 100 Plus
chr3L 24539361 chr3L 9359331..9359498 1..169 780 98.8 Plus
chr3L 24539361 chr3L 9359987..9360100 234..347 570 100 Plus
chr3L 24539361 chr3L 9360453..9360551 347..445 480 99 Plus
chr3L 24539361 chr3L 9359833..9359899 167..233 335 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9369543..9370296 853..1606 3770 100 Plus
3L 28110227 3L 9368899..9369314 440..855 2080 100 Plus
3L 28110227 3L 9367444..9367612 1..169 845 100 Plus
3L 28110227 3L 9368101..9368214 234..347 570 100 Plus
3L 28110227 3L 9368567..9368665 347..445 495 100 Plus
3L 28110227 3L 9367947..9368013 167..233 335 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9362643..9363396 853..1606 3770 100 Plus
3L 28103327 3L 9361999..9362414 440..855 2080 100 Plus
3L 28103327 3L 9360544..9360712 1..169 845 100 Plus
3L 28103327 3L 9361201..9361314 234..347 570 100 Plus
3L 28103327 3L 9361667..9361765 347..445 495 100 Plus
3L 28103327 3L 9361047..9361113 167..233 335 100 Plus
Blast to na_te.dros performed 2019-03-16 07:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 921..1014 1417..1326 113 60.6 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 988..1040 1400..1348 112 67.9 Minus

LD21662.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:52:51 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9359331..9359497 1..168 98 -> Plus
chr3L 9359835..9359899 169..233 100 -> Plus
chr3L 9359987..9360100 234..347 100 -> Plus
chr3L 9360454..9360547 348..441 98 -> Plus
chr3L 9360787..9361200 442..855 100 -> Plus
chr3L 9361432..9362179 856..1603 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:41 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 1..1173 82..1254 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:22 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 1..1173 82..1254 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:51:41 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 1..1173 82..1254 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:39 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 1..1173 82..1254 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:12 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 1..1173 82..1254 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:35 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 119..1721 1..1603 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:22 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 61..1663 1..1603 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:41 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 68..1670 1..1603 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:39 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 119..1721 1..1603 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:12 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 68..1670 1..1603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:52:51 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9367444..9367611 1..168 100 -> Plus
3L 9367949..9368013 169..233 100 -> Plus
3L 9368101..9368214 234..347 100 -> Plus
3L 9368568..9368661 348..441 100 -> Plus
3L 9368901..9369314 442..855 100 -> Plus
3L 9369546..9370293 856..1603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:52:51 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9367444..9367611 1..168 100 -> Plus
3L 9367949..9368013 169..233 100 -> Plus
3L 9368101..9368214 234..347 100 -> Plus
3L 9368568..9368661 348..441 100 -> Plus
3L 9368901..9369314 442..855 100 -> Plus
3L 9369546..9370293 856..1603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:52:51 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9367444..9367611 1..168 100 -> Plus
3L 9367949..9368013 169..233 100 -> Plus
3L 9368101..9368214 234..347 100 -> Plus
3L 9368568..9368661 348..441 100 -> Plus
3L 9368901..9369314 442..855 100 -> Plus
3L 9369546..9370293 856..1603 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:41 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9360544..9360711 1..168 100 -> Plus
arm_3L 9361049..9361113 169..233 100 -> Plus
arm_3L 9361201..9361314 234..347 100 -> Plus
arm_3L 9361668..9361761 348..441 100 -> Plus
arm_3L 9362001..9362414 442..855 100 -> Plus
arm_3L 9362646..9363393 856..1603 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:08 Download gff for LD21662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9362001..9362414 442..855 100 -> Plus
3L 9362646..9363393 856..1603 100   Plus
3L 9360544..9360711 1..168 100 -> Plus
3L 9361049..9361113 169..233 100 -> Plus
3L 9361201..9361314 234..347 100 -> Plus
3L 9361668..9361761 348..441 100 -> Plus

LD21662.hyp Sequence

Translation from 0 to 1253

> LD21662.hyp
KQQVFFKNPAQNRENSSRQQNRRTPNRMSGKVLFACSKCFSRHLYEELSS
GQQLCKGCRGSTSVGKCTYCRSEFQPATKSQSACKKCEHYLGKYGKPSAC
ECCKIVAAFGGSKCMRCASYEAKYGPPVQCDECKLRSAFDRRDENKKVNG
KLLCWLCACAYKRALLKAQQEGRIPMSKKRPHEKTSSSHRDSAAAKKPSR
NELGKSGSGANNSGVNAVSGAGLDLPDKISRGNGGNGTIAAPAAITVDTN
SSDHVVAITYLKERIASLEKRLNQKDKELLEKDKQLTELKGKNFEKENDM
RNRLKEVERLHDMKVDNLNRKIASVLKELAVLKKSSNKKTAAISKAEKEI
IKRENLSPKEEILATTGPEKPTKASSEPADLDKDEKSRDRDEERSEQGDR
ASVRSRSASSSPTPSSN*

LD21662.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-PA 390 CG4452-PA 1..390 28..417 2023 100 Plus
CG4452-PE 156 CG4452-PE 1..89 28..116 497 100 Plus

LD21662.pep Sequence

Translation from 81 to 1253

> LD21662.pep
MSGKVLFACSKCFSRHLYEELSSGQQLCKGCRGSTSVGKCTYCRSEFQPA
TKSQSACKKCEHYLGKYGKPSACECCKIVAAFGGSKCMRCASYEAKYGPP
VQCDECKLRSAFDRRDENKKVNGKLLCWLCACAYKRALLKAQQEGRIPMS
KKRPHEKTSSSHRDSAAAKKPSRNELGKSGSGANNSGVNAVSGAGLDLPD
KISRGNGGNGTIAAPAAITVDTNSSDHVVAITYLKERIASLEKRLNQKDK
ELLEKDKQLTELKGKNFEKENDMRNRLKEVERLHDMKVDNLNRKIASVLK
ELAVLKKSSNKKTAAISKAEKEIIKRENLSPKEEILATTGPEKPTKASSE
PADLDKDEKSRDRDEERSEQGDRASVRSRSASSSPTPSSN*

LD21662.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10687-PA 389 GF10687-PA 1..370 1..372 1645 88.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15365-PA 390 GG15365-PA 1..390 1..390 1995 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14584-PA 389 GH14584-PA 1..372 1..370 1565 82.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-PA 390 CG4452-PA 1..390 1..390 2023 100 Plus
CG4452-PE 156 CG4452-PE 1..89 1..89 497 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13909-PA 390 GI13909-PA 1..373 1..370 1579 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22439-PA 391 GL22439-PA 1..373 1..374 1677 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18194-PA 391 GA18194-PA 1..373 1..374 1677 88 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25138-PA 389 GM25138-PA 1..389 1..390 1994 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14172-PA 390 GD14172-PA 1..390 1..390 2027 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11767-PA 393 GJ11767-PA 1..376 1..370 1581 81.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17632-PA 414 GK17632-PA 1..387 1..365 1416 75.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20828-PA 390 GE20828-PA 1..390 1..390 1994 97.4 Plus