Clone LD21675 Report

Search the DGRC for LD21675

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:75
Vector:pOT2
Associated Gene/TranscriptCG3679-RA
Protein status:LD21675.pep: gold
Preliminary Size:2717
Sequenced Size:2738

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3679 2000-02-14 Blastp of sequenced clone
CG3679 2001-01-01 Release 2 assignment
CG3679 2003-01-01 Sim4 clustering to Release 3
CG3679 2008-04-29 Release 5.5 accounting
CG3679 2008-08-15 Release 5.9 accounting
CG3679 2008-12-18 5.12 accounting

Clone Sequence Records

LD21675.complete Sequence

2738 bp (2738 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132178

> LD21675.complete
CAAACACGGCGTTGTTTCGAAGTTTTTTTGTATTAGTTTCTATCCTGAAA
TTGTTGATATTTGTGTTCATGCGAAGATGTGTGATGTCCGAAATCTAATT
GACCTGACCGAATGGGATGAGCCCAGCAAGGAGGCGTTGCACGAAGAGCC
GGAGGACTCTGTGGTGGCCACGAACTTTGAGGTGCCCTACGATCCCTTCG
ATCTGATGGAGAAGGAAGCTTGCATCAAGGGCATGACCTTGACGTCGCAG
ATCAAGGAAAAGGTGTCCAGTGCCGAACGACAGTATCCGGATCTTGAGAG
CGAGAGTCCTCCGGTTTGCATGCAGACGGACACAGCGAATGCGTCCGCAC
CAGGATCAGGTGAAACAACCCAAAAGAAGCGCTCGAACAGCTCATTCCAG
AAGCAGCTCCTCAAACTTAATGCCTCGCGATCCGTGATCAACACCCCACC
CCATAGTCGATCCAAAACAGAGTTTGAAAGAACAATACTGAACGAAAACC
TGCAGATGCTAGCGGCAGAGTCACCACTGAAGCTTATTGAGGACGACGAC
GTCCTGTCCACCAGTATCAATTTCGAGGAAGACCTCAAAATGCTACGCAT
TCCGATCCTAGACGCGCTAAACAATGCAGAATCCAAGGCAATAGCCGAAG
ACAATCACGGAAACGTAAACAAAATTGATGTCGTGATTCAGGAGGGTCAG
AAAAGTCCACAGACAACAATCGAAAACCGATCAAATGGCAAGAGTTTGAG
CCAGCTCCTGGAACAGCTGAAGATCTTGGCACACGAACACGTCGAGAGGT
CGAAGTGGCATTTGTTTGACTCGGCAATTGAATCCATTGCCGCGGTCATC
TTCGGACCCAGTGGCTCTTGTCCGGATGATAGGAAAGCCGAATCAACTAT
ACCATCGCTATACTCATACACCCGCCAAGGAACATTCGATCTCGAACTTC
AAGGCACAAAGACAAAGCGTTCCCTGGATGCTAACCACATACAGGAGGAG
GAGATCGATGTACCAGGCAGTAACGTTCAAAGCTTTCCCGATGCCATGGT
CTGTTCAACAGCCACGTTTGATGGCGAATCGCGACTAGATGCATTTGATA
AGGACTTGCTTTCATCTCTACCATCAATACCATCAATACCATCGATACCT
TCGATACCGCCCGTGTCAGTAGCCAAAAAGGAGCCATTTATGACGGAGTT
GGTCGACGAAACACTCGCTCAACAGATTAACGAACTGCTGGAGCGGCACA
AACTCGCAAACACGGGGATCAGTGATCATGAACAACAGCAGGGACTTGAT
CCCAGGACAGTCATACTGTTGGTGAACCCCAGCAACTACAGCAGCACTCA
GGTAGCATACACAACGAGCAACGTGGCCAAGACTAAGCCAATGCCTCTAC
GTGAGACCAATGCGGCGGGCTCAATGCGCCGTCGATCGTCGTCGCTTTCC
ATTCAGGACAAGTCTAAGCTGCCCCGGGAAGTCCTGAAGTCCGATCGCCA
GGTGGAGAATCTTCCGCCGCCCAAGGAGACCAAGAACACAGCCACTGTTG
GGCCGATGGGTGCAGCAGCTGCCTTTCGCCAGAGGAGCAACTCCTTCTCC
ACGCCAAGTAATCCGTCCACAAAGGCCTACGAGAACAGGCGTACTCTAAT
GAGCAGCCGCTTGAGGAATCCAGCCATAAACGAATCGGTGTCCAAACCCA
GTGGAAGTGTTAAGGCGACGAAGCCCATCAAGCCGGTGGTTCCCATTATG
AAAGTGACCGCAAGCAACGATTCCACCTACCTGAATCCGTTCCATCCGCG
TGTACCCGAAACGCCCATCTCATCGAGGACCAAACCCGCCCAAAACATAT
CCTGCACGAGCACACCACTGCCACAAATGCGCACCCAGCAGCGCAGATCC
CTGAAGCCAATGGCCATGACCGCAGGATCGGGATCCCTGTCAAATACCTC
CTATTCGACGCCCAGCATTAGGGGGCCGAGCTTCTGCAAGAAGAGCGGTT
CCGGCTAGAGGATAGAGAGCGTGCATTGCGTAGGAATGGGGAATGGGGGA
GCACTTCCTTGGCCCGTGGGCGGTGGCGCAATGTCGCCTGAAAGTGAATT
CGAATGTGATGTCTGAGGTCAAGTTTTTAACCTTGCAGATAAACCGACAA
TGTGAAAACGGCTTGGCTATCTCCCCCATATATTTTTGTTTGTTCCATTT
GTTTTTCCTTTTTTTTTTTTTTGGCCGACGTCACAAGATAAAGCGAACTG
ATATGCAGTCTGCACTCCATACTAAACGTTAGCAAATTAGTTTTCGTTTC
GAAACGGATTAGCAGTGGAGCCAGTACTTTATATTTAATTTCCACTCGAA
CTGAACGAACTAATTAGTTAATTTATCTTTGTTAACTACTCACTAACCCA
CTAAGTTACCTTGCGAACTCATAGTGCTTGAAATCCCTTTCTCATTTCCC
TATGTTTTTGAAATTCCACTGAAGTGGAGTTGATTAAAGAAGAGATTTAA
TAGTAAGCCAAGCATATCAGAAGAGAATAAAAATAGCATTTAAGAGGCAG
GTGAAGCCGTTTGACCACAAGTATCCTACGTTTTAAGGATTTGTCCATTG
ATGTAATACCTAGAACTAGTAGCTTGCAAAGCACACTCCCTATTAATTTC
GCTTTTCGCAGCTGTCTTGAAAGACCAGCGAGGAATAATTCAATAAAAAG
AGATTATCAGTTAAGCAAAAAAAAAAAAAAAAAAAAAA

LD21675.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-RA 2787 CG3679-RA 35..2752 1..2718 13590 100 Plus
CG9914-RA 1600 CG9914-RA 1543..1600 2718..2661 290 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16194859..16196626 948..2716 8555 99 Plus
chrX 22417052 chrX 16193961..16194686 228..953 3555 99.3 Plus
chrX 22417052 chrX 16193624..16193853 1..230 1135 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16305154..16306924 948..2718 8840 99.9 Plus
X 23542271 X 16304251..16304976 228..953 3630 100 Plus
X 23542271 X 16303914..16304143 1..230 1150 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16313252..16315022 948..2718 8840 99.9 Plus
X 23527363 X 16312349..16313074 228..953 3630 100 Plus
X 23527363 X 16312012..16312241 1..230 1150 100 Plus
Blast to na_te.dros performed 2019-03-15 22:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 3469..3508 69..30 119 77.5 Minus

LD21675.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:07:04 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16193624..16193852 1..229 99 -> Plus
chrX 16193963..16194685 230..952 99 -> Plus
chrX 16194864..16196626 953..2716 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:46 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1..1932 77..2008 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:07 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1..1932 77..2008 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:08:52 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1..1932 77..2008 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:10:51 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1..1932 77..2008 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:13 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1..1932 77..2008 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:37:52 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1..2716 1..2716 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:07 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1..2716 1..2716 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:08:52 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 45..2760 1..2716 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:10:51 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1..2716 1..2716 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:13 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 45..2760 1..2716 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:07:04 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
X 16303914..16304142 1..229 100 -> Plus
X 16304253..16304975 230..952 100 -> Plus
X 16305159..16306922 953..2716 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:07:04 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
X 16303914..16304142 1..229 100 -> Plus
X 16304253..16304975 230..952 100 -> Plus
X 16305159..16306922 953..2716 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:07:04 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
X 16303914..16304142 1..229 100 -> Plus
X 16304253..16304975 230..952 100 -> Plus
X 16305159..16306922 953..2716 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:08:52 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16197947..16198175 1..229 100 -> Plus
arm_X 16198286..16199008 230..952 100 -> Plus
arm_X 16199192..16200955 953..2716 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:47:23 Download gff for LD21675.complete
Subject Subject Range Query Range Percent Splice Strand
X 16312012..16312240 1..229 100 -> Plus
X 16312351..16313073 230..952 100 -> Plus
X 16313257..16315020 953..2716 100   Plus

LD21675.hyp Sequence

Translation from 0 to 2007

> LD21675.hyp
KHGVVSKFFCISFYPEIVDICVHAKMCDVRNLIDLTEWDEPSKEALHEEP
EDSVVATNFEVPYDPFDLMEKEACIKGMTLTSQIKEKVSSAERQYPDLES
ESPPVCMQTDTANASAPGSGETTQKKRSNSSFQKQLLKLNASRSVINTPP
HSRSKTEFERTILNENLQMLAAESPLKLIEDDDVLSTSINFEEDLKMLRI
PILDALNNAESKAIAEDNHGNVNKIDVVIQEGQKSPQTTIENRSNGKSLS
QLLEQLKILAHEHVERSKWHLFDSAIESIAAVIFGPSGSCPDDRKAESTI
PSLYSYTRQGTFDLELQGTKTKRSLDANHIQEEEIDVPGSNVQSFPDAMV
CSTATFDGESRLDAFDKDLLSSLPSIPSIPSIPSIPPVSVAKKEPFMTEL
VDETLAQQINELLERHKLANTGISDHEQQQGLDPRTVILLVNPSNYSSTQ
VAYTTSNVAKTKPMPLRETNAAGSMRRRSSSLSIQDKSKLPREVLKSDRQ
VENLPPPKETKNTATVGPMGAAAAFRQRSNSFSTPSNPSTKAYENRRTLM
SSRLRNPAINESVSKPSGSVKATKPIKPVVPIMKVTASNDSTYLNPFHPR
VPETPISSRTKPAQNISCTSTPLPQMRTQQRRSLKPMAMTAGSGSLSNTS
YSTPSIRGPSFCKKSGSG*

LD21675.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-PB 643 CG3679-PB 1..643 26..668 3268 100 Plus
CG3679-PA 643 CG3679-PA 1..643 26..668 3268 100 Plus

LD21675.pep Sequence

Translation from 76 to 2007

> LD21675.pep
MCDVRNLIDLTEWDEPSKEALHEEPEDSVVATNFEVPYDPFDLMEKEACI
KGMTLTSQIKEKVSSAERQYPDLESESPPVCMQTDTANASAPGSGETTQK
KRSNSSFQKQLLKLNASRSVINTPPHSRSKTEFERTILNENLQMLAAESP
LKLIEDDDVLSTSINFEEDLKMLRIPILDALNNAESKAIAEDNHGNVNKI
DVVIQEGQKSPQTTIENRSNGKSLSQLLEQLKILAHEHVERSKWHLFDSA
IESIAAVIFGPSGSCPDDRKAESTIPSLYSYTRQGTFDLELQGTKTKRSL
DANHIQEEEIDVPGSNVQSFPDAMVCSTATFDGESRLDAFDKDLLSSLPS
IPSIPSIPSIPPVSVAKKEPFMTELVDETLAQQINELLERHKLANTGISD
HEQQQGLDPRTVILLVNPSNYSSTQVAYTTSNVAKTKPMPLRETNAAGSM
RRRSSSLSIQDKSKLPREVLKSDRQVENLPPPKETKNTATVGPMGAAAAF
RQRSNSFSTPSNPSTKAYENRRTLMSSRLRNPAINESVSKPSGSVKATKP
IKPVVPIMKVTASNDSTYLNPFHPRVPETPISSRTKPAQNISCTSTPLPQ
MRTQQRRSLKPMAMTAGSGSLSNTSYSTPSIRGPSFCKKSGSG*

LD21675.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19621-PA 583 GF19621-PA 1..581 1..611 1320 49.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17950-PA 628 GG17950-PA 1..628 1..643 2748 83.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12468-PA 653 GH12468-PA 1..641 1..613 641 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-PB 643 CG3679-PB 1..643 1..643 3268 100 Plus
CG3679-PA 643 CG3679-PA 1..643 1..643 3268 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11143-PA 633 GI11143-PA 1..632 1..641 754 36.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21320-PA 632 GL21320-PA 1..632 1..643 1311 49.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17607-PA 632 GA17607-PA 1..632 1..643 1334 50.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13420-PA 385 GM13420-PA 1..376 1..375 1800 91.5 Plus
Dsec\GM13421-PA 205 GM13421-PA 1..205 439..643 1032 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17274-PA 477 GD17274-PA 1..475 1..475 2269 95.4 Plus
Dsim\GD24831-PA 86 GD24831-PA 1..86 558..643 438 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18521-PA 649 GJ18521-PA 1..648 1..641 784 36.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10067-PA 649 GK10067-PA 1..647 1..643 669 35.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11014-PA 639 GE11014-PA 1..639 1..643 2893 86.5 Plus