Clone LD21681 Report

Search the DGRC for LD21681

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:81
Vector:pOT2
Associated Gene/Transcriptl(2)dtl-RA
Protein status:LD21681.pep: gold
Preliminary Size:1300
Sequenced Size:2657

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11295 2001-01-01 Release 2 assignment
CG11295 2002-06-10 Blastp of sequenced clone
CG11295 2003-01-01 Sim4 clustering to Release 3
l(2)dtl 2008-04-29 Release 5.5 accounting
l(2)dtl 2008-08-15 Release 5.9 accounting
l(2)dtl 2008-12-18 5.12 accounting

Clone Sequence Records

LD21681.complete Sequence

2657 bp (2657 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121647

> LD21681.complete
AGCACGGTCACACTGCCCAAGAGTCCAGCTGCGTCGTTGAAAAATATTTT
CGATGCCTCGAAGGTTGATTTATTTCAGAGGAAATAGCAGGAAATAAAGT
TGAAAACGCAGATTACGAGCAGCAGCCGCCAAGAGGAGTGCACAATGAAC
ATTTACAACAAGTTGCGGGCCAGGGAGCATGGCTACGGCAATGAGAGGAC
CTACGACTTCGCCCTGCGCCGCCTTTCCGTGGCCAAGGAGGACAGCTGGC
GGGGCATCGCGCCGGCCAACTACTGCCCAGACTTCAATCCGGAACCGCCG
ATCTTCTCCGCCAAGTTCGCCAACTGCGATGGCTATCGGCACATCCTGGC
GATCGCCAACGAGGACGGCAAGATCACGCTGCAGGACACCACCCAGCGCA
ACCACCAGCCGGAGGAGCAGTCCCTGGTGGGCCCGCAGTGCCACTTCAAC
GCCGTTTTCGATCTGGAATGGGCACCCGGCCAGATGCGCTTCGTCTCCGC
CTCGGGCGATCACACTGCCAGACTGTGGGAGGTGGCGGGCTCCGGCATAC
GCGGCCTGAACTCCTATGTGGGTCACACAAGGTCCGTCAAGTCGGCGGCC
TTTAAGCGCACCGATCCCGCTGTCTTCGCCACCGGCGGCCGTGATGGCGC
CATTCTCATCTGGGACATCAGGGCCAATCTCAATATGGACCTCACGTCAC
GCGTGGACAACTGCATCTACAGCGGTCACACGGGCGGACCGGGCACGCCA
GTCTCACAGCGCAAGCAGCGCACACGCACTCCCAAGATGGCCGGAGGAAC
CACCTCGAGCAGCATCACTGGCTTGGCCTTCCAGGACAACGATACGTTGA
TCTCCTGTGGTGCCGGTGACGGAGTCATCAAGGTGTGGGACCTGCGGCGC
AACTACACAGCCTACAAAAAGGAGCCACTGCCCAGGCACAAGCTGCCATA
TGCCGGCAGCTCCACCTTCCGTGGATTCACCAACCTCATTGTGGACGCGT
CAGGCACGAGGCTGTATGCCAACTGCATGGACAACACCATCTATTGCTAC
AATCTGGCCTCCTACTCGCAGCGCCCGCTGGCGTGCTACAAGGGACTCCT
TAACTCCACGTTCTACATCAAATCCTGCCTCAGCCCGGACGGCAAGTATC
TGCTGAGCGGAAGCAGCGACGAGCGGGCTTACATCTGGAACCTGGACCAC
GCCGAGGAGCCGCTCGTTGCACTGGCCGGACACACGGTGGAGGTAACCTG
CGTGGCCTGGGGCTCCAGCCACGATTGCCCCATTGTCACGTGCAGCGATG
ATGCGCGTCACAAAATCTGGCGGATTGGACCCGACCTGGATGGCCTCAGC
GAGGCGGAGCGGGCGGAAAAGTACCGAGGAACTGCCTCCTACGTCAGGGA
GTTCGGCAAGAAGGCATTTGGTCCGTCTAGTGGAAATCACAAGTACAATC
TTCGAGATCTGGAGTCCACGCCAAGATCTCTGAAGCGCCTTATGGATCAA
AATGAAAGGACGCCAGGTTCCGTGGAAAAGACGACGACCAAGCGTTCGTT
CCTGGAAATGCTGGGCGTAGCTGGCCAGGAGACGGAAGCCACAGAACAGC
CCCAGAAACGGGCGAAGCCACTGGAGTCACGTGGAAGGCGGCTCTTTGGA
CCTTCTAGCCAGGAAACTGCTTGCAGGCACATACAACTTCAGTCCATAAA
CGAGGAAGATGCCTCGCCGAGCAAGAGACAAAAGGAGAACTCTGCCGCGG
AGGATGTCTCACCACTGCACAAGCTTCTCAGCACACCAAGTCATTCCCCT
TTGAGTGAGAATGTCAACCATGTGTACACCTCCCCGCCAACCACGTCAGC
GGCAGCAGCAGCGGTGGCTGCAGACGCGCTTAATCCGCCGCCGATCTCCG
CTGCCATCTACTCGCCCACCTCCAACCTGCCCAATTACGTGCTGGATGGC
GAGGCACCGCACCTGGGCATCATGTCGCCCAAGCGGAAGGCGAAGGAGAA
GGTGGACTGGCTGACGAATATCCGCAAACAGAAGCTGATGAGTGGCAGGG
CCCATGTGACGCTCAGCGAAAAGATCAGCGAGGAGCAGCAGGCCGATGTG
CTGGCATCCCCGCGCCTCCAGAGTCTGCGGCAGTCAGAGTGCAGTCCCAG
GATACACGCCTCGCCCCGCAGACGCATCTCCCATACGGACGGAGGCGGTG
GCACGCCGGCTGGCAGCTCCTCGCACTCCCATTCCCAATCCCAGCCAAAA
ACGCCCACTTCCAGTAGGCGAAACAGCGAGACGACGCTCCTGCGATTCTT
TAGCATTCAGAGAAGTAGCAGTGTGCCGGCGGAGGAAACAACGACAACGA
ATGCGGCTCCCTCCTCTTCTGATCCCCATCCCCCGGCAGTGACTGCGCCC
GCAGCCACGCCCCTCAGCATGCGCACGCCCACGACGGCGGTGGGCAGCGA
TTGACGCGGAGCCTCGAGCCACAGCACCATTATTGCACTTGTAGTTTTAA
GCGGACATTGTTTAAGTTATTTTATGTAGATAGTAGGTTGCATCTATCGC
GGGACGAGTTGGTAACCAACTCCCCGCCCTCTGTACAGAGCCAAAAGATA
CGAAAGACTAACGTACCCGAATAAAAGTAACTCCATTTTAAAAAAAAAAA
AAAAAAA

LD21681.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)dtl-RA 2673 l(2)dtl-RA 27..2668 1..2642 13210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19589111..19591563 187..2639 11920 99.1 Plus
chr2R 21145070 chr2R 19588651..19588838 1..188 925 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23702951..23705406 187..2642 12280 100 Plus
2R 25286936 2R 23702491..23702678 1..188 940 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23704150..23706605 187..2642 12280 100 Plus
2R 25260384 2R 23703690..23703877 1..188 940 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:05:44 has no hits.

LD21681.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:06:41 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19588651..19588837 1..187 99 -> Plus
chr2R 19589112..19591563 188..2639 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:50 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 1..2310 145..2454 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:26:47 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 1..2310 145..2454 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:52:43 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 1..2310 145..2454 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:17:12 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 1..2310 145..2454 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:26:50 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 1..2310 145..2454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:55:15 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 13..2651 1..2639 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:26:47 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 13..2651 1..2639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:43 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 15..2653 1..2639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:17:12 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 13..2651 1..2639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:26:50 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)dtl-RA 15..2653 1..2639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:41 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23702491..23702677 1..187 100 -> Plus
2R 23702952..23705403 188..2639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:41 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23702491..23702677 1..187 100 -> Plus
2R 23702952..23705403 188..2639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:41 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23702491..23702677 1..187 100 -> Plus
2R 23702952..23705403 188..2639 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:43 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19590014..19590200 1..187 100 -> Plus
arm_2R 19590475..19592926 188..2639 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:50:35 Download gff for LD21681.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23704169..23706620 188..2639 100   Plus
2R 23703708..23703894 1..187 100 -> Plus

LD21681.pep Sequence

Translation from 144 to 2453

> LD21681.pep
MNIYNKLRAREHGYGNERTYDFALRRLSVAKEDSWRGIAPANYCPDFNPE
PPIFSAKFANCDGYRHILAIANEDGKITLQDTTQRNHQPEEQSLVGPQCH
FNAVFDLEWAPGQMRFVSASGDHTARLWEVAGSGIRGLNSYVGHTRSVKS
AAFKRTDPAVFATGGRDGAILIWDIRANLNMDLTSRVDNCIYSGHTGGPG
TPVSQRKQRTRTPKMAGGTTSSSITGLAFQDNDTLISCGAGDGVIKVWDL
RRNYTAYKKEPLPRHKLPYAGSSTFRGFTNLIVDASGTRLYANCMDNTIY
CYNLASYSQRPLACYKGLLNSTFYIKSCLSPDGKYLLSGSSDERAYIWNL
DHAEEPLVALAGHTVEVTCVAWGSSHDCPIVTCSDDARHKIWRIGPDLDG
LSEAERAEKYRGTASYVREFGKKAFGPSSGNHKYNLRDLESTPRSLKRLM
DQNERTPGSVEKTTTKRSFLEMLGVAGQETEATEQPQKRAKPLESRGRRL
FGPSSQETACRHIQLQSINEEDASPSKRQKENSAAEDVSPLHKLLSTPSH
SPLSENVNHVYTSPPTTSAAAAAVAADALNPPPISAAIYSPTSNLPNYVL
DGEAPHLGIMSPKRKAKEKVDWLTNIRKQKLMSGRAHVTLSEKISEEQQA
DVLASPRLQSLRQSECSPRIHASPRRRISHTDGGGGTPAGSSSHSHSQSQ
PKTPTSSRRNSETTLLRFFSIQRSSSVPAEETTTTNAAPSSSDPHPPAVT
APAATPLSMRTPTTAVGSD*

LD21681.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13076-PA 774 GF13076-PA 1..774 1..769 3628 87.9 Plus
Dana\GF14067-PA 419 GF14067-PA 161..388 115..372 154 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22879-PA 765 GG22879-PA 1..765 1..769 3979 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21305-PA 772 GH21305-PA 1..734 1..729 2830 75.1 Plus
Dgri\GH11537-PA 347 GH11537-PA 87..322 90..370 162 24.1 Plus
Dgri\GH13339-PA 419 GH13339-PA 161..388 115..372 159 27.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)dtl-PA 769 CG11295-PA 1..769 1..769 4050 100 Plus
CG7611-PJ 630 CG7611-PJ 525..623 315..415 163 36.3 Plus
CG7611-PI 630 CG7611-PI 525..623 315..415 163 36.3 Plus
CG7611-PA 630 CG7611-PA 525..623 315..415 163 36.3 Plus
CG7611-PD 630 CG7611-PD 525..623 315..415 163 36.3 Plus
CG7611-PC 630 CG7611-PC 525..623 315..415 163 36.3 Plus
CG7611-PH 630 CG7611-PH 525..623 315..415 163 36.3 Plus
CG7611-PB 630 CG7611-PB 525..623 315..415 163 36.3 Plus
CG7611-PG 630 CG7611-PG 525..623 315..415 163 36.3 Plus
CG7611-PE 630 CG7611-PE 525..623 315..415 163 36.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19740-PA 777 GI19740-PA 1..777 1..769 2808 72.1 Plus
Dmoj\GI17814-PA 419 GI17814-PA 161..388 115..372 167 28 Plus
Dmoj\GI17028-PA 347 GI17028-PA 89..322 92..370 155 22.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16882-PA 772 GL16882-PA 1..772 1..769 3331 83 Plus
Dper\GL15160-PA 75 GL15160-PA 16..75 703..769 148 58.2 Plus
Dper\GL13202-PA 75 GL13202-PA 16..75 703..769 148 58.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10897-PA 772 GA10897-PA 1..772 1..769 3324 82.9 Plus
Dpse\GA22790-PA 154 GA22790-PA 2..154 566..769 332 45.1 Plus
Dpse\GA22917-PA 148 GA22917-PA 19..148 583..769 302 44.9 Plus
Dpse\GA22789-PA 90 GA22789-PA 18..90 400..513 207 47.4 Plus
Dpse\GA20480-PA 634 GA20480-PA 317..612 100..400 157 24.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16040-PA 767 GM16040-PA 1..767 1..769 4052 98.2 Plus
Dsec\GM12236-PA 446 GM12236-PA 159..446 100..393 166 27.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11788-PA 769 GD11788-PA 1..769 1..769 4081 98.6 Plus
Dsim\GD17720-PA 446 GD17720-PA 159..446 100..393 167 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17993-PA 758 GJ17993-PA 1..758 1..769 2991 74.6 Plus
Dvir\GJ17641-PA 419 GJ17641-PA 161..388 115..372 163 27.2 Plus
Dvir\GJ24581-PA 347 GJ24581-PA 23..322 67..370 156 24.5 Plus
Dvir\GJ11835-PA 641 GJ11835-PA 536..615 315..396 155 42.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23072-PA 759 GK23072-PA 1..759 1..769 2978 74.9 Plus
Dwil\GK23911-PA 347 GK23911-PA 23..322 67..370 160 25.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14317-PA 769 GE14317-PA 1..769 1..769 4010 96.9 Plus
Dyak\GE10447-PA 467 GE10447-PA 196..467 115..393 156 27 Plus

LD21681.hyp Sequence

Translation from 144 to 2453

> LD21681.hyp
MNIYNKLRAREHGYGNERTYDFALRRLSVAKEDSWRGIAPANYCPDFNPE
PPIFSAKFANCDGYRHILAIANEDGKITLQDTTQRNHQPEEQSLVGPQCH
FNAVFDLEWAPGQMRFVSASGDHTARLWEVAGSGIRGLNSYVGHTRSVKS
AAFKRTDPAVFATGGRDGAILIWDIRANLNMDLTSRVDNCIYSGHTGGPG
TPVSQRKQRTRTPKMAGGTTSSSITGLAFQDNDTLISCGAGDGVIKVWDL
RRNYTAYKKEPLPRHKLPYAGSSTFRGFTNLIVDASGTRLYANCMDNTIY
CYNLASYSQRPLACYKGLLNSTFYIKSCLSPDGKYLLSGSSDERAYIWNL
DHAEEPLVALAGHTVEVTCVAWGSSHDCPIVTCSDDARHKIWRIGPDLDG
LSEAERAEKYRGTASYVREFGKKAFGPSSGNHKYNLRDLESTPRSLKRLM
DQNERTPGSVEKTTTKRSFLEMLGVAGQETEATEQPQKRAKPLESRGRRL
FGPSSQETACRHIQLQSINEEDASPSKRQKENSAAEDVSPLHKLLSTPSH
SPLSENVNHVYTSPPTTSAAAAAVAADALNPPPISAAIYSPTSNLPNYVL
DGEAPHLGIMSPKRKAKEKVDWLTNIRKQKLMSGRAHVTLSEKISEEQQA
DVLASPRLQSLRQSECSPRIHASPRRRISHTDGGGGTPAGSSSHSHSQSQ
PKTPTSSRRNSETTLLRFFSIQRSSSVPAEETTTTNAAPSSSDPHPPAVT
APAATPLSMRTPTTAVGSD*

LD21681.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)dtl-PA 769 CG11295-PA 1..769 1..769 4050 100 Plus
CG7611-PJ 630 CG7611-PJ 525..623 315..415 163 36.3 Plus
CG7611-PI 630 CG7611-PI 525..623 315..415 163 36.3 Plus
CG7611-PA 630 CG7611-PA 525..623 315..415 163 36.3 Plus
CG7611-PD 630 CG7611-PD 525..623 315..415 163 36.3 Plus