Clone LD21694 Report

Search the DGRC for LD21694

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:216
Well:94
Vector:pOT2
Associated Gene/Transcriptthoc5-RA
Protein status:LD21694.pep: gold
Preliminary Size:2200
Sequenced Size:2005

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2980 2001-01-01 Release 2 assignment
CG2980 2002-06-10 Blastp of sequenced clone
CG2980 2003-01-01 Sim4 clustering to Release 3
thoc5 2008-04-29 Release 5.5 accounting
thoc5 2008-08-15 Release 5.9 accounting
thoc5 2008-12-18 5.12 accounting

Clone Sequence Records

LD21694.complete Sequence

2005 bp (2005 high quality bases) assembled on 2002-06-10

GenBank Submission: AY061305

> LD21694.complete
CTGATTTACAATTTCGCCAAATAAAATGGAAACAATATTGAACACGCAGT
TCGATCAGCTGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAG
GGGCAATCGACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGC
TCTGAAGCACGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCG
ACAAGCTGCACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTG
CAGAATCTTCTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTG
CCAGAAGTTCAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCG
AGTACTCCAGCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCC
AGCCACAAGCAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAA
GGCACTCGACAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGC
TCCAGGACAATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCC
TTGCGCACTCTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCT
ATCCCTGGACGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCA
AGCCGCTCTACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGC
GAGGAGCAGTCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCA
AATGCAGGAGTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGAC
AGACTAAAAAGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAAC
TTGGACGACTCACTCGCTCCTCACCCACTACACATTTGTTTGACGATTGG
AGCGGCTGGATCGAATCAGCTCGTTTTGCAGATTCGCTACTTTGATTTTA
TCAAGTGTGCCACTGTCTGGGGCCAACTTAACTGCTCCAGGAATGCCAAC
GGCCAGGGTGACACAAACTTTGTTCACCACCTATTGCGGCATTTGTACCC
CAATGACTTGGGCAATGAATTACCCATTCCGGGAATCCAATACGAGCTAC
GAAGCTCGGATTTAACAGCCGAGGAATGTGTGCGCTACCTCAAGGCCAAG
GACTACGGAAAACCCTTCTGTTGGCTGCAAAGTATGTGCTCGATTGCAAC
CGTCAACAGTTCGATGCTGTACAAACACGAACTGAACTTGAATAAGAACA
ACAAGGAGATTATTGACCGCATTGCCAGGCGCTTGAACTCTTGGCAGCGT
TTAAGCCAGCAGATTCGCGGGCTGACCTTCAAGGATATCGATTTGTATAG
CTTGCAGGAGAACATCTATCCAGCCGGCCTGTCGTGCAGTCTCGTCCAAT
GGACTGCCATCACACATGAGGAGCTTCACTCGCAAATTTCAGACGCACTG
AATTCTTCGTCAGCGGACAAGGGTATTACGTACAACTCTTACCGCGCTGT
CATCGTCCGGGGATCGGCCAAAATGGAGTGCTTTATTAGAATACCGAGTA
ACTATCCACTGGAAATGCCTCTATGGATTCTGAATGTGCACTGGAACGGA
TGCCTTACCGCGCAAAACAATTCGGCGATCAAGATGATGGAGTTCTGGAC
CAACTCCCTGCAGCCCAAACATTTGGAGCCCAACGACTGCATCCTGTACG
CGCAGCTCTTCCGCACCATCTACAGCTTCGATATATTCCTCGAAACCGAG
GGATCCATGCAAAACACCATTGAGTACAACAAGGAGAAGCCTTACATAAG
CGCCTTCGCCAAGCGGAGCCGCTCACGCCCCTACAAATACATCAAGAAGG
GATCGGTCTACGCGTTCAAGCAGTGACAGTTGAATAACGAATGTTGTACA
ACACAATGCGCCAATGCGGTTACTAAACGTTCTCACAGTTGCGTTTATTA
CGATTAGTAATACAATAAATAAGTAACATTTAAAGCTAAAAAAAAAAAAA
AAAAA

LD21694.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 2048 thoc5-RA 61..2048 1..1988 9940 100 Plus
thoc5.a 2037 thoc5.a 47..2037 1..1988 9885 99.8 Plus
CG16787-RA 1069 CG16787-RA 997..1069 1988..1916 365 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19840372..19841168 99..895 3940 99.6 Plus
chr2R 21145070 chr2R 19841534..19842072 1095..1633 2650 99.4 Plus
chr2R 21145070 chr2R 19842127..19842482 1632..1987 1765 99.7 Plus
chr2R 21145070 chr2R 19841222..19841335 895..1008 555 99.1 Plus
chr2R 21145070 chr2R 19840214..19840314 1..101 505 100 Plus
chr2R 21145070 chr2R 19841394..19841482 1008..1096 430 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23954297..23955093 99..895 3985 100 Plus
2R 25286936 2R 23955458..23955996 1095..1633 2695 100 Plus
2R 25286936 2R 23956051..23956407 1632..1988 1785 100 Plus
2R 25286936 2R 23955147..23955260 895..1008 570 100 Plus
2R 25286936 2R 23954139..23954239 1..101 505 100 Plus
2R 25286936 2R 23955318..23955413 1008..1103 450 97.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23955496..23956292 99..895 3985 100 Plus
2R 25260384 2R 23956657..23957195 1095..1633 2695 100 Plus
2R 25260384 2R 23957250..23957606 1632..1988 1785 100 Plus
2R 25260384 2R 23956346..23956459 895..1008 570 100 Plus
2R 25260384 2R 23955338..23955438 1..101 505 100 Plus
2R 25260384 2R 23956517..23956612 1008..1103 450 97.9 Plus
Blast to na_te.dros performed on 2019-03-16 15:55:13 has no hits.

LD21694.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:56:01 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19840214..19840313 1..100 100 -> Plus
chr2R 19840374..19841168 101..895 99 -> Plus
chr2R 19841223..19841335 896..1008 99 -> Plus
chr2R 19841395..19841482 1009..1096 98 -> Plus
chr2R 19841536..19842072 1097..1633 99 -> Plus
chr2R 19842129..19842482 1634..1987 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:52 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1..1851 26..1876 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:12 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1..1851 26..1876 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:20:56 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1..1851 26..1876 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:44 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1..1851 26..1876 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:50:04 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1..1851 26..1876 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:52:57 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 47..2033 1..1987 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:11 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 47..2033 1..1987 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:56 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 49..2035 1..1987 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:44 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 47..2033 1..1987 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:50:04 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 49..2035 1..1987 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:01 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23955319..23955406 1009..1096 100 -> Plus
2R 23954139..23954238 1..100 100 -> Plus
2R 23954299..23955093 101..895 100 -> Plus
2R 23955148..23955260 896..1008 100 -> Plus
2R 23955460..23955996 1097..1633 100 -> Plus
2R 23956053..23956406 1634..1987 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:01 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23955319..23955406 1009..1096 100 -> Plus
2R 23954139..23954238 1..100 100 -> Plus
2R 23954299..23955093 101..895 100 -> Plus
2R 23955148..23955260 896..1008 100 -> Plus
2R 23955460..23955996 1097..1633 100 -> Plus
2R 23956053..23956406 1634..1987 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:01 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23955319..23955406 1009..1096 100 -> Plus
2R 23954139..23954238 1..100 100 -> Plus
2R 23954299..23955093 101..895 100 -> Plus
2R 23955148..23955260 896..1008 100 -> Plus
2R 23955460..23955996 1097..1633 100 -> Plus
2R 23956053..23956406 1634..1987 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:56 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19841662..19841761 1..100 100 -> Plus
arm_2R 19841822..19842616 101..895 100 -> Plus
arm_2R 19842671..19842783 896..1008 100 -> Plus
arm_2R 19842842..19842929 1009..1096 100 -> Plus
arm_2R 19842983..19843519 1097..1633 100 -> Plus
arm_2R 19843576..19843929 1634..1987 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:48:53 Download gff for LD21694.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23955516..23956310 101..895 100 -> Plus
2R 23956365..23956477 896..1008 100 -> Plus
2R 23956536..23956623 1009..1096 100 -> Plus
2R 23956677..23957213 1097..1633 100 -> Plus
2R 23957270..23957623 1634..1987 100   Plus
2R 23955356..23955455 1..100 100 -> Plus

LD21694.pep Sequence

Translation from 25 to 1875

> LD21694.pep
METILNTQFDQLQKAIEGIKEAKSKGQSTDEARIATTLMFVALKHANREV
KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDT
SLELLSEAEYSSELPDMPNDAEELSSHKQHLHRLDCELRLRKALDKQYSA
LLSSKQELLQDNLSHAQRYVSFAPALRTLQSATKPLHDALQLSLDVEWKL
SAVVKYLPKPLYVLFIVLQSLQRVSEEQSFTAEVVGYESEAQMQELLKEK
KCSTLNYRQTKKESGDREKIADKNNLDDSLAPHPLHICLTIGAAGSNQLV
LQIRYFDFIKCATVWGQLNCSRNANGQGDTNFVHHLLRHLYPNDLGNELP
IPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSIATVNSSMLYK
HELNLNKNNKEIIDRIARRLNSWQRLSQQIRGLTFKDIDLYSLQENIYPA
GLSCSLVQWTAITHEELHSQISDALNSSSADKGITYNSYRAVIVRGSAKM
ECFIRIPSNYPLEMPLWILNVHWNGCLTAQNNSAIKMMEFWTNSLQPKHL
EPNDCILYAQLFRTIYSFDIFLETEGSMQNTIEYNKEKPYISAFAKRSRS
RPYKYIKKGSVYAFKQ*

LD21694.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12880-PA 610 GF12880-PA 1..610 1..616 2552 76.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22908-PA 615 GG22908-PA 1..615 1..616 3033 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20183-PA 617 GH20183-PA 1..617 1..616 2066 64 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-PA 616 CG2980-PA 1..616 1..616 3198 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18852-PA 614 GI18852-PA 1..614 1..616 2045 63 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10911-PA 616 GL10911-PA 1..616 1..616 2299 71.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25595-PA 80 GA25595-PA 1..80 537..616 374 87.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16068-PA 613 GM16068-PA 1..613 1..616 3157 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11814-PA 616 GD11814-PA 1..616 1..616 3169 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21887-PA 614 GJ21887-PA 1..614 1..616 2029 62.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15720-PA 622 GK15720-PA 1..622 1..616 2008 62.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14346-PA 495 GE14346-PA 170..495 291..616 1699 92.9 Plus
Dyak\GE14346-PA 495 GE14346-PA 1..175 1..175 827 92.6 Plus

LD21694.hyp Sequence

Translation from 25 to 1875

> LD21694.hyp
METILNTQFDQLQKAIEGIKEAKSKGQSTDEARIATTLMFVALKHANREV
KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDT
SLELLSEAEYSSELPDMPNDAEELSSHKQHLHRLDCELRLRKALDKQYSA
LLSSKQELLQDNLSHAQRYVSFAPALRTLQSATKPLHDALQLSLDVEWKL
SAVVKYLPKPLYVLFIVLQSLQRVSEEQSFTAEVVGYESEAQMQELLKEK
KCSTLNYRQTKKESGDREKIADKNNLDDSLAPHPLHICLTIGAAGSNQLV
LQIRYFDFIKCATVWGQLNCSRNANGQGDTNFVHHLLRHLYPNDLGNELP
IPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSIATVNSSMLYK
HELNLNKNNKEIIDRIARRLNSWQRLSQQIRGLTFKDIDLYSLQENIYPA
GLSCSLVQWTAITHEELHSQISDALNSSSADKGITYNSYRAVIVRGSAKM
ECFIRIPSNYPLEMPLWILNVHWNGCLTAQNNSAIKMMEFWTNSLQPKHL
EPNDCILYAQLFRTIYSFDIFLETEGSMQNTIEYNKEKPYISAFAKRSRS
RPYKYIKKGSVYAFKQ*

LD21694.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-PA 616 CG2980-PA 1..616 1..616 3198 100 Plus