Clone LD21701 Report

Search the DGRC for LD21701

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:1
Vector:pOT2
Associated Gene/Transcriptcrn-RA
Protein status:LD21701.pep: gold
Preliminary Size:2200
Sequenced Size:2282

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3193 2001-07-04 Blastp of sequenced clone
CG3193 2003-01-01 Sim4 clustering to Release 3
crn 2008-04-29 Release 5.5 accounting
crn 2008-08-15 Release 5.9 accounting
crn 2008-12-18 5.12 accounting

Clone Sequence Records

LD21701.complete Sequence

2282 bp (2282 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051666

> LD21701.complete
TAGCGTTTTTCCAACATAACATTGCTAAGTGAGGGACCCCGAATCGCACA
GCATGGAGCGGCCACAGAAGATGCCCAAGGTGGCCAAGGTCAAAAACAAA
GCGCCGGCGGAGGTGCAAATTACGGCGGAGCAGTTGCTCCGTGAGGCCAA
GGAGCGAGATCTGGAGATTCTGCCGCCGCCGCCAAAGCAGAAGATCTCCG
ATCCCGCCGAGTTGGCAGACTATCAGCAGCGGAAGCGAAAGACCTTCGAG
GACAATCTCCGCAAGAACCGCATGGTAGTCAGCCATTGGATCAAATATGC
TCAGTGGGAGGAGCAGCAGCAGGAGATCCAGCGGGCGCGCTCTATCTGGG
AGCGGGCGTTGGACAATGAGCACCGGAACGTGACCCTCTGGCTGAAATAC
GCCGAGATGGAGATGAAGAACAAGCAGGTGAATCATGCTCGCAATCTGTG
GGATCGGGCAGTGACCATCATGCCGCGAGTCAACCAGTTCTGGTACAAGT
ACACCTACATGGAGGAGATGCTGGAGAATGTGGCAGGGGCGCGACAGGTG
TTCGAGCGCTGGATGGAGTGGCAACCGGAGGAGCAGGCCTGGCAGACCTA
CGTCAACTTCGAGCTGCGCTACAAGGAGATCGACCGGGCACGGGAGATCT
ACGAGCGATTTGTCTATGTGCACCCGGACGTGAAGAACTGGATAAAGTTC
GCCCGCTTTGAGGAGTCTCATGGGTTTATCCACGGCTCTCGGCGGGTATT
TGAGCGCGCTGTGGAGTTCTTTGGTGACGACTACATCGAGGAGCGCCTGT
TCATCGCCTTTGCACGTTTCGAGGAGGGTCAAAAGGAGCACGACAGGGCG
CGCATCATCTACAAGTACGCTTTAGATCACCTACCTAAAGATCGCACACA
GGAGCTGTTCAAGGCCTATACGAAACACGAGAAAAAGTACGGCGACAGAG
CGGGTATTGAGGATGTGATTGTTTCCAAGCGCAAGTACCAGTACGAGCAG
GAGGTGGCCGCCAATCCCACCAACTACGATGCCTGGTTCGACTATTTGCG
CTTGATTGAGGCTGAGGGCGATCGGGATCAGATCCGTGAGACGTACGAAC
GGGCCATTTCCAACGTGCCGCCTGCCAATGAAAAGAACTTCTGGCGACGC
TACATTTACCTTTGGATCAATTATGCTTTGTACGAGGAGCTTGAAGCGGA
GGACGCGGAACGCACGCGGCAGATCTACAAGACCTGTCTGGAGCTAATAC
CTCACAAGCAGTTCACCTTCAGCAAGCTTTGGCTGCTGTACGCCCAATTC
GAGATCCGCTGCAAGGAGCTGCAGCGAGCACGCAAAGCTCTGGGCTTGGC
CATCGGCATGTGTCCCAGAGATAAGCTCTTCAGAGGCTATATTGATCTGG
AGATTCAGTTGCGTGAGTTCGAGCGCTGCCGCATGCTGTACGAGAAGTTC
CTGGAGTTTGGACCGGAGAATTGTGTCACTTGGATGAAGTTTGCCGAGCT
GGAGAATCTGTTGGGCGACACGGACCGGGCGAGAGCCATTTTCGAGCTGG
CGGTGCAGCAGCCGCGCCTGGACATGCCAGAGCTGCTGTGGAAGGCGTAC
ATCGACTTCGAGGTAGCCCTAGGCGAAACAGAGCTAGCCAGACAGCTTTA
CGAGCGACTCCTTGAGCGGACGCAGCATGTGAAAGTGTGGATGTCGTTTG
CCAAGTTCGAGATGGGCCTCAGCCACGGCGACAGCGGGCCAGATGCGGAG
CTGAACGTGCAGCTGGCAAGGAGAATCTATGAGCGAGCCAACGAGATGTT
GCGTCAGCTGGGAGACAAGGAGTCGCGTGTTCTGTTGCTAGAGGCATGGC
GCGACTTTGAACGCGACGCCTCCGATTCGCAGGAGATGCAAAAGGTAATG
GACAAGATGCCGCGGCGCATCAAGAAGCGGCAAAAGATCGTCTCGGACAA
TGGCGTCGAGGAAGGTTGGGAGGAGGTATTCGACTACATCTTTCCCGAGG
ACGAAATGGCTCGACCCAATCTCAAGTTGCTGGCTGCAGCTAAGATGTGG
AAGACACAAAAAGACAACACGGTGGACGACCCGCCCGCTACAGCTATTGC
ATCTGAGCCAGAACCTGCAGCTGATGCTGCCCCAGCGGATACGACGGATA
GCGGTGACTGATTCACTTCCGCCTAAAAATCGTTGCTTTTGAACAAAGCT
AAATATCTGAAATTGCAGATTTTTCGCTTTATTTTTGGATACCTTAGTAA
TAAACCACTTAAATAAAAAAAAAAAAAAAAAA

LD21701.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
crn-RA 2443 crn-RA 163..2432 1..2270 11350 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2141534..2143711 2264..87 10890 100 Minus
chrX 22417052 chrX 2143766..2143855 90..1 450 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2247588..2249771 2270..87 10920 100 Minus
X 23542271 X 2249826..2249915 90..1 450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2255686..2257869 2270..87 10920 100 Minus
X 23527363 X 2257924..2258013 90..1 450 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:57:41 has no hits.

LD21701.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:58:36 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2141534..2143709 89..2264 100 <- Minus
chrX 2143768..2143855 1..88 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:53 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 1..2109 53..2161 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:45 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 1..2109 53..2161 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:29 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 1..2109 53..2161 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:25 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 1..2109 53..2161 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:32 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 1..2109 53..2161 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:08 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 67..2330 1..2264 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:44 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 67..2330 1..2264 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:29 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 69..2332 1..2264 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:25 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 67..2330 1..2264 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:32 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
crn-RA 69..2332 1..2264 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:36 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
X 2247594..2249769 89..2264 100 <- Minus
X 2249828..2249915 1..88 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:36 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
X 2247594..2249769 89..2264 100 <- Minus
X 2249828..2249915 1..88 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:36 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
X 2247594..2249769 89..2264 100 <- Minus
X 2249828..2249915 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:29 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2141627..2143802 89..2264 100 <- Minus
arm_X 2143861..2143948 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:09 Download gff for LD21701.complete
Subject Subject Range Query Range Percent Splice Strand
X 2255692..2257867 89..2264 100 <- Minus
X 2257926..2258013 1..88 100   Minus

LD21701.pep Sequence

Translation from 52 to 2160

> LD21701.pep
MERPQKMPKVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISD
PAELADYQQRKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWE
RALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKY
TYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRAREIY
ERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLF
IAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRA
GIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYER
AISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIP
HKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLE
IQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELA
VQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFA
KFEMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLLLEAWR
DFERDASDSQEMQKVMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYIFPED
EMARPNLKLLAAAKMWKTQKDNTVDDPPATAIASEPEPAADAAPADTTDS
GD*

LD21701.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22206-PA 688 GF22206-PA 1..677 1..676 3387 95.3 Plus
Dana\GF13706-PA 882 GF13706-PA 397..744 213..552 199 25.2 Plus
Dana\GF23653-PA 931 GF23653-PA 302..778 79..554 185 22.2 Plus
Dana\GF13706-PA 882 GF13706-PA 397..712 79..419 174 22 Plus
Dana\GF23653-PA 931 GF23653-PA 533..852 79..422 161 22.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12634-PA 702 GG12634-PA 1..702 1..702 3538 95.9 Plus
Dere\GG20394-PA 882 GG20394-PA 397..744 213..552 197 25 Plus
Dere\GG16015-PA 931 GG16015-PA 302..778 79..554 195 22.4 Plus
Dere\GG20394-PA 882 GG20394-PA 397..712 79..419 179 20.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12311-PA 707 GH12311-PA 1..688 1..690 3322 91.6 Plus
Dgri\GH23803-PA 900 GH23803-PA 271..747 79..554 203 22.8 Plus
Dgri\GH21027-PA 891 GH21027-PA 398..745 213..552 200 26.2 Plus
Dgri\GH23803-PA 900 GH23803-PA 502..821 79..422 161 22.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
crn-PA 702 CG3193-PA 1..702 1..702 3724 100 Plus
fand-PA 883 CG6197-PA 397..763 213..565 235 25.7 Plus
fand-PA 883 CG6197-PA 397..712 79..419 213 21.4 Plus
CG6841-PB 931 CG6841-PB 302..778 79..554 211 22.6 Plus
CG6841-PA 931 CG6841-PA 302..778 79..554 211 22.6 Plus
fand-PA 883 CG6197-PA 439..790 19..355 161 20.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21455-PA 705 GI21455-PA 1..705 1..697 3321 90.2 Plus
Dmoj\GI13491-PA 899 GI13491-PA 302..746 79..554 196 22.4 Plus
Dmoj\GI13491-PA 899 GI13491-PA 501..820 79..422 172 22.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13392-PA 680 GL13392-PA 1..673 1..681 3230 91.1 Plus
Dper\GL17467-PA 848 GL17467-PA 397..764 213..565 205 25.5 Plus
Dper\GL21701-PA 915 GL21701-PA 286..762 79..554 186 22.2 Plus
Dper\GL17467-PA 848 GL17467-PA 370..712 51..419 174 20.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22854-PA 689 GA22854-PA 1..682 1..681 3343 93.3 Plus
Dpse\GA19432-PA 884 GA19432-PA 397..764 213..565 206 25.5 Plus
Dpse\GA19898-PA 931 GA19898-PA 302..778 79..554 188 22.2 Plus
Dpse\GA19432-PA 884 GA19432-PA 370..712 51..419 176 20.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18901-PA 702 GM18901-PA 1..702 1..702 3696 99 Plus
Dsec\GM15004-PA 931 GM15004-PA 363..778 76..554 191 22.6 Plus
Dsec\GM15004-PA 931 GM15004-PA 533..852 79..422 172 22.9 Plus
Dsec\GM21482-PA 443 GM21482-PA 100..304 348..552 167 29.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24613-PA 267 GD24613-PA 1..267 436..702 1383 97.8 Plus
Dsim\GD14782-PA 931 GD14782-PA 302..778 79..554 198 22.4 Plus
Dsim\GD24613-PA 267 GD24613-PA 7..148 112..240 164 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16476-PA 693 GJ16476-PA 1..689 1..689 3351 91.7 Plus
Dvir\GJ21637-PA 884 GJ21637-PA 397..744 213..552 205 26.5 Plus
Dvir\GJ11852-PA 931 GJ11852-PA 302..778 79..554 205 22.8 Plus
Dvir\GJ21637-PA 884 GJ21637-PA 397..712 79..419 176 22.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16333-PA 693 GK16333-PA 1..674 1..672 3320 94.2 Plus
Dwil\GK15972-PA 886 GK15972-PA 399..768 213..571 192 26 Plus
Dwil\GK10384-PA 931 GK10384-PA 302..778 79..554 189 22 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16963-PA 702 GE16963-PA 1..702 1..702 3641 97.3 Plus
Dyak\GE12556-PA 882 GE12556-PA 397..744 213..552 197 25.8 Plus
Dyak\GE19580-PA 931 GE19580-PA 302..778 79..554 196 22.4 Plus
Dyak\GE12556-PA 882 GE12556-PA 397..712 79..419 180 22 Plus

LD21701.hyp Sequence

Translation from 52 to 2160

> LD21701.hyp
MERPQKMPKVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISD
PAELADYQQRKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWE
RALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKY
TYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRAREIY
ERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLF
IAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRA
GIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYER
AISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIP
HKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLE
IQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELA
VQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFA
KFEMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLLLEAWR
DFERDASDSQEMQKVMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYIFPED
EMARPNLKLLAAAKMWKTQKDNTVDDPPATAIASEPEPAADAAPADTTDS
GD*

LD21701.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
crn-PA 702 CG3193-PA 1..702 1..702 3724 100 Plus
fand-PA 883 CG6197-PA 397..763 213..565 235 25.7 Plus
fand-PA 883 CG6197-PA 397..712 79..419 213 21.4 Plus
CG6841-PB 931 CG6841-PB 302..778 79..554 211 22.6 Plus
CG6841-PA 931 CG6841-PA 302..778 79..554 211 22.6 Plus
fand-PA 883 CG6197-PA 439..790 19..355 161 20.7 Plus