Clone LD21709 Report

Search the DGRC for LD21709

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:9
Vector:pOT2
Associated Gene/TranscriptCycK-RA
Protein status:LD21709.pep: gold
Preliminary Size:2200
Sequenced Size:1902

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15218 2001-01-01 Release 2 assignment
CG15218 2001-07-04 Blastp of sequenced clone
CG15218 2003-01-01 Sim4 clustering to Release 3
CycK 2008-04-29 Release 5.5 accounting
CycK 2008-08-15 Release 5.9 accounting
CycK 2008-12-18 5.12 accounting

Clone Sequence Records

LD21709.complete Sequence

1902 bp (1902 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051667

> LD21709.complete
CCCATTTGTTCCTCGTAACAGTCAAAGGACGGCCAAAACCACGTGTAAAT
ATATCTGTTTAATTATATCCCAAAATTAAGTCACCAAAACTAGCAAACGC
ACAAAAAATATTCAGTTTGACCCGCAAGAGATCGAAAATTTTTGCGTTAT
CTATTTACCAATAAAGTTGTTCCATATACTCAAAATCGTCGTGGTCTTGG
TGTAAAAGGGGCTTCCAATAAAGTTTTTTTCTTCATCGTCGTAGACATGG
TAACACTGCAAGTGAACATAAAAATCGAAAACTGATTTATTTACAATAAA
CAAAAGCGCTTATCGGCTCCAGGACGCGCATATGCTGACAACCATTTGGC
TAAAGGTTTAACACAAATTCCTTCCAACGACGCGGACTACTGGTAGTACC
CGCAGCCTAAATTGCCGCGATGCCGTGCTGGTATTACGACAAAAAGGAGC
TGCGGGAGACGCCCTCGATCTTGGATGGAATAAGCTTCGAAACGGAGCGG
CGGTACAGAAAAGAAGGTGCTCGATTTATTATGGAATGTGGCACCAAAAT
GGGCTTGGGCCACAACACGATGGCCACCGGCGTTGTATATTTTCACCGAT
TTTACATGTTTCATTCGTTCCGGAGTTTCCCCCGGTACGTGACTGCGTGC
TGCTGCCTGTTCTTTGCTGGCAAGGTGGAGGAGACGCCAAAGAAGTGTCG
CGACATTATTAAAACTGCGCGTGGCATCCTTACCGACAATTACTTCTACT
CGTTTGGCGACGACCCTAAGGAGGAGGTGATGACGCTAGAGCGTATTCTG
CTGCAGACCATCAAATTCGATTTGCAAGTAGAGCATCCTTACACCTTTCT
CCTAAAGTACGCTAAGTGTTTCAAAGGCGACCAGCAGAAGCTGCAAAAGA
TGGTGCAAATGGCGTGGAACTTCGTCAACGACTCTCTCAGCACAGTAGTT
TGTCTACAGTGGGAGCCGGAGATTATCGCCGTGGCTCTTATCCATTTGGC
CAGCAAGCTAAGCAAATTCACTGTGCAAGACTGGGAGGGCCGCCAGCCAC
AGCAGCAGCGTTGGTGGGATATGTTTGTGTCTGATGTAACGATGGAAATA
CTCGAAGACATCTGCCACCAAGTTCTGGACCTGTACCAATCAACCCAAAA
AGAAGCGCTCCAGCCAACCAGTCCGCCCCAAAAGCCACCAAGCAGAGCCG
ACAGTCCAAAATCCGGCAAGCTTACCAATTCTACGGGTATTGGACCACTT
TCCGTTCCACAACAGCCGCCGCCCCCCGTATGTGGCAACGGTGGCGTGCT
GGAAGTTAGCAACATTCAGAGCATTAAATCCCTAGCCAGTGGCGTGCCAA
TCATTGGTCCTAGCGACTCCCAGAACCTGTTACAGGGCCCAACACCACCA
GGTCAGCCATCCGGGTACCACATTTATCATGCTCCTCCACCGCCGCCCCC
GCCGGTAGTGCCTATGCCGCCGTACCCCTCTTCCGGATGGGGAGTCCAGC
AGACAGTGGTCGGACACTATAGCGGGAGCGCTGCACCACCACCACCAATG
CCGCCTAGCTTGCCTCCAGGAGCCAGTGGATACTACAACGCCGGTGGGCG
TCCATCGCAGCAGCGCTACTAGTAGATGCAATGACTAATAAACAAGTAAA
AAAAATTTGTATATTAAAACTAGCGAACCGTTCGGAATAGGATTTAGAGC
GGGGATCTTCGTACGGTTCGGTTTTCTTTTTTGGTTACACTCTAGGCCCA
ATATTGTCCCGGGGTATTTATCAATGATTTTTATTCCCTTATTTTAAGTC
CTTACCCTTTCACATGTACTTGTTAGCAGAATTTTGCTGAAATGATGTTT
CCAAAACTGAATAAAACCAAATGAACTAGAAAAAAAAAAAAAAAAAAAAA
AA

LD21709.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
CycK-RA 1888 CycK-RA 1..1886 1..1886 9430 100 Plus
CycK.a 1746 CycK.a 33..1678 1..1646 8230 100 Plus
CycK-RB 1850 CycK-RB 78..1719 245..1886 8210 100 Plus
CycK-RB 1850 CycK-RB 34..77 1..44 220 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22126809..22128687 1879..1 9395 100 Minus
chr2L 23010047 chr2L 22129567..22129671 666..562 360 89.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22128257..22130142 1886..1 9430 100 Minus
2L 23513712 2L 22131022..22131126 666..562 345 88.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22128257..22130142 1886..1 9430 100 Minus
2L 23513712 2L 22131022..22131126 666..562 345 88.5 Minus
Blast to na_te.dros performed on 2019-03-16 16:31:18 has no hits.

LD21709.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:32:17 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22126809..22128687 1..1879 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:56:54 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RB 1..1203 420..1622 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:32 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RB 1..1203 420..1622 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:37 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RA 1..1203 420..1622 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:11 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RB 1..1203 420..1622 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:31:39 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RA 1..1203 420..1622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:51 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RA 1..1879 1..1879 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:32 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RA 1..1879 1..1879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:37 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RA 1..1879 1..1879 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:11 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RA 1..1879 1..1879 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:31:39 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
CycK-RA 1..1879 1..1879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:17 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22128264..22130142 1..1879 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:17 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22128264..22130142 1..1879 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:17 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22128264..22130142 1..1879 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:37 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22128264..22130142 1..1879 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:55 Download gff for LD21709.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22128264..22130142 1..1879 100   Minus

LD21709.pep Sequence

Translation from 419 to 1621

> LD21709.pep
MPCWYYDKKELRETPSILDGISFETERRYRKEGARFIMECGTKMGLGHNT
MATGVVYFHRFYMFHSFRSFPRYVTACCCLFFAGKVEETPKKCRDIIKTA
RGILTDNYFYSFGDDPKEEVMTLERILLQTIKFDLQVEHPYTFLLKYAKC
FKGDQQKLQKMVQMAWNFVNDSLSTVVCLQWEPEIIAVALIHLASKLSKF
TVQDWEGRQPQQQRWWDMFVSDVTMEILEDICHQVLDLYQSTQKEALQPT
SPPQKPPSRADSPKSGKLTNSTGIGPLSVPQQPPPPVCGNGGVLEVSNIQ
SIKSLASGVPIIGPSDSQNLLQGPTPPGQPSGYHIYHAPPPPPPPVVPMP
PYPSSGWGVQQTVVGHYSGSAAPPPPMPPSLPPGASGYYNAGGRPSQQRY
*

LD21709.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15386-PA 402 GF15386-PA 1..401 1..400 1497 81.1 Plus
Dana\GF23902-PA 1139 GF23902-PA 64..294 4..242 367 31.5 Plus
Dana\GF22225-PA 558 GF22225-PA 109..331 14..239 312 32.8 Plus
Dana\GF18125-PA 267 GF18125-PA 14..240 4..240 170 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21466-PA 401 GG21466-PA 1..400 1..400 1732 94.5 Plus
Dere\GG15801-PA 1097 GG15801-PA 45..275 4..242 362 31.1 Plus
Dere\GG12651-PA 563 GG12651-PA 101..327 14..243 309 31.8 Plus
Dere\GG21023-PA 267 GG21023-PA 14..240 4..240 167 25.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10982-PA 434 GH10982-PA 1..418 1..392 1440 74.2 Plus
Dgri\GH15353-PA 1111 GH15353-PA 25..255 4..242 365 31.5 Plus
Dgri\GH24522-PA 617 GH24522-PA 138..360 14..239 325 32.8 Plus
Dgri\GH19239-PA 267 GH19239-PA 14..240 4..240 173 25.8 Plus
Dgri\GH21374-PA 259 GH21374-PA 39..251 36..240 165 23.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
CycK-PC 400 CG15218-PC 1..400 1..400 2188 100 Plus
CycK-PB 400 CG15218-PB 1..400 1..400 2188 100 Plus
CycK-PA 400 CG15218-PA 1..400 1..400 2188 100 Plus
CycT-PC 1097 CG6292-PC 45..275 4..242 323 31.2 Plus
CycT-PB 1097 CG6292-PB 45..275 4..242 323 31.2 Plus
CG16903-PA 560 CG16903-PA 99..325 14..243 302 31.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17494-PA 415 GI17494-PA 1..377 1..371 1424 75.3 Plus
Dmoj\GI12957-PA 1147 GI12957-PA 43..273 4..242 364 31.5 Plus
Dmoj\GI21601-PA 587 GI21601-PA 97..325 8..239 320 32 Plus
Dmoj\GI24273-PA 267 GI24273-PA 14..240 4..240 167 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26256-PA 411 GL26256-PA 1..375 1..367 1409 76.5 Plus
Dper\GL25034-PA 1130 GL25034-PA 41..271 4..242 368 31.5 Plus
Dper\GL18224-PA 540 GL18224-PA 94..316 14..239 316 31.9 Plus
Dper\GL23664-PA 267 GL23664-PA 14..240 4..240 170 25.4 Plus
Dper\GL24344-PA 253 GL24344-PA 33..246 36..241 152 22.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13578-PA 423 GA13578-PA 1..387 1..367 1506 79.6 Plus
Dpse\GA19492-PA 1137 GA19492-PA 48..278 4..242 368 31.5 Plus
Dpse\GA14208-PA 540 GA14208-PA 94..316 14..239 316 31.9 Plus
Dpse\GA20234-PA 267 GA20234-PA 14..240 4..240 170 25.4 Plus
Dpse\GA30142-PC 353 GA30142-PC 133..346 36..241 154 22.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16115-PA 400 GM16115-PA 1..400 1..400 2123 98.2 Plus
Dsec\GM24323-PA 1093 GM24323-PA 45..275 4..242 361 31.1 Plus
Dsec\GM18920-PA 559 GM18920-PA 98..324 14..243 310 31.8 Plus
Dsec\GM25819-PA 267 GM25819-PA 14..240 4..240 167 25.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21618-PA 400 GD21618-PA 1..400 1..400 2132 98.8 Plus
Dsim\GD12396-PA 1097 GD12396-PA 45..275 4..242 361 31.1 Plus
Dsim\GD16393-PA 559 GD16393-PA 98..324 14..243 310 31.8 Plus
Dsim\GD20395-PA 267 GD20395-PA 14..205 4..194 166 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15154-PA 425 GJ15154-PA 1..339 1..343 1436 79.3 Plus
Dvir\GJ13100-PA 1142 GJ13100-PA 55..285 4..242 369 32 Plus
Dvir\GJ16541-PA 582 GJ16541-PA 104..326 14..239 315 32.8 Plus
Dvir\GJ10846-PA 267 GJ10846-PA 14..205 4..194 172 28.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15351-PA 421 GK15351-PA 1..326 1..307 1390 80.5 Plus
Dwil\GK17011-PA 1202 GK17011-PA 58..288 4..242 364 31.5 Plus
Dwil\GK24907-PA 596 GK24907-PA 128..350 14..239 325 33.2 Plus
Dwil\GK13831-PA 267 GK13831-PA 14..240 4..240 174 26.2 Plus
Dwil\GK13086-PA 259 GK13086-PA 28..251 27..240 153 23.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12968-PA 402 GE12968-PA 1..401 1..400 1831 94.5 Plus
Dyak\GE22136-PA 1099 GE22136-PA 47..277 4..242 361 31.1 Plus
Dyak\GE16978-PA 562 GE16978-PA 101..327 14..243 311 31.8 Plus
Dyak\GE25539-PA 375 GE25539-PA 155..367 36..240 174 23.6 Plus
Dyak\GE26424-PA 267 GE26424-PA 14..240 4..240 167 25.4 Plus

LD21709.hyp Sequence

Translation from 419 to 1621

> LD21709.hyp
MPCWYYDKKELRETPSILDGISFETERRYRKEGARFIMECGTKMGLGHNT
MATGVVYFHRFYMFHSFRSFPRYVTACCCLFFAGKVEETPKKCRDIIKTA
RGILTDNYFYSFGDDPKEEVMTLERILLQTIKFDLQVEHPYTFLLKYAKC
FKGDQQKLQKMVQMAWNFVNDSLSTVVCLQWEPEIIAVALIHLASKLSKF
TVQDWEGRQPQQQRWWDMFVSDVTMEILEDICHQVLDLYQSTQKEALQPT
SPPQKPPSRADSPKSGKLTNSTGIGPLSVPQQPPPPVCGNGGVLEVSNIQ
SIKSLASGVPIIGPSDSQNLLQGPTPPGQPSGYHIYHAPPPPPPPVVPMP
PYPSSGWGVQQTVVGHYSGSAAPPPPMPPSLPPGASGYYNAGGRPSQQRY
*

LD21709.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CycK-PC 400 CG15218-PC 1..400 1..400 2188 100 Plus
CycK-PB 400 CG15218-PB 1..400 1..400 2188 100 Plus
CycK-PA 400 CG15218-PA 1..400 1..400 2188 100 Plus
CycT-PC 1097 CG6292-PC 45..275 4..242 323 31.2 Plus
CycT-PB 1097 CG6292-PB 45..275 4..242 323 31.2 Plus