Clone LD21713 Report

Search the DGRC for LD21713

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:13
Vector:pOT2
Associated Gene/TranscriptCG5991-RA
Protein status:LD21713.pep: gold
Preliminary Size:1300
Sequenced Size:1907

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5991 2001-01-01 Release 2 assignment
CG5991 2003-01-01 Sim4 clustering to Release 3
CG5991 2003-02-17 Blastp of sequenced clone
CG5991 2008-04-29 Release 5.5 accounting
CG5991 2008-08-15 Release 5.9 accounting
CG5991 2008-12-18 5.12 accounting

Clone Sequence Records

LD21713.complete Sequence

1907 bp (1907 high quality bases) assembled on 2003-02-17

GenBank Submission: AY121648

> LD21713.complete
CACAGCGATACGGAAGCAACAATTGAAACGTCCAGAACTCCTCCTCCCAC
GAGTATTTAAATTCTGACACAAGAGTGCCTGAACCAAAATCCCACTCACC
GAATGCTGGTGCTTTGATTTGCAACTGTTCCTAGGTTCCGGCTGAATCCC
TAGATTTGCGGATCTACGCAACTCATTCACTCAAAAGCCAGCCGAATTTA
TCGCGCCAGATTAAACAAACAGAAACAAAAAACAGAAGCCGAGACCAGTT
CCACATCGTGCCATTTTTATCTGGGCATATAGGCAGACGTGATTACGTGA
TTAGTGCGGCTGGGGCTGCCGTTTATCAATAGCGAGAGCAACAATGGTTT
CCTACTTCGTACCTCGTGGCCGCTTCCTGCTGAAGGCCGGCAATCTCAGA
CAGGTGGTGCAGCAGCAGCATCAGCCGGCCCAGCTACAGCTGCAGCCCAT
TAAAGGACCACAGCCGCAGGCTCAGAATGCCAGTCTGCCGGTGGCCCGTC
ACTTGCGCCAATTCTCCTCGAATCCAGCCTCCAAGGAGGCACCATTACAC
CACCGGCGCCCGCAACATAAACAACAACCGAATCCTAGTCAGGAGTTAGC
TCAGATTCGGCGCAATATACTCTCACGGTGGACGGGCTTCCTGTTGCGTT
GGGCTCCCATGGGCATCTGTGTGTTTGGCGCCATCGAGTGGCAGTTGCAG
AAGAACCGCTGCGAAAAGGAAGGAAAACCTCGGACAGCGTCCGAGCTCCA
GTCGCGCATTTACTGCTCCCTGCCACTGCGCATAATCAGCCGTTGCTGGG
GCTGGCTGGCCGCTTGCTACTTGCCTCCCAGTCTGCGTCCCTACGTCTAC
GGATGGTATTCCAACACGTTTGATGTTAATTTGAGCGAGGCCATGTATCC
GGAGTATGAGCACTACAATAGTCTGGCTGAGTTCTTTACCAGGCCACTTA
AGGAGGGCGTTCGTGTCATCGATCAGCAGGCTCCACTGGTCTCCCCCGCC
GACGGTAAGGTTCTACATTTTGGCAGCGCCTCGGACTCGCTAATAGAGCA
GGTCAAGGGTGTTAGCTACAGTATCGAGGACTTCCTTGGCCCGCTGGAGA
CTGTGGAGCAGGCAAATTCCGGTGCCTCCTATGCCCAGGCCCTCAAAAAG
AAGAGCGATGGTTCTACGGAGCTGTACCAGTGCGTGATATATCTGGCTCC
CGGAGATTACCATCGATTCCACTCTCCTACCGCTTGGAAGCCCACCATTC
GTCGTCACTTCTCCGGCGAACTGCTGTCCGTGAGCCCCAAAGTTGCCGGC
TGGCTGCCTGGTCTGTTTTGCCTCAACGAACGTGTGCTGTACATGGGCCA
GTGGAAGCACGGATTCTTCTCCTACACCGCCGTGGGTGCCACAAACGTGG
GATCCGTCGAAATCTACATGGATGCCGATCTGAAGACGAACCGTTGGACT
GGATTCAATGTCGGCAAGCATCCGCCCAGCACCTACGAGTACGATGAACT
GGTCTTGAACAAAGAACTAACAGAAGCGCCCAAGGAATTCGGCAAGGGGG
ATCTGGTGGGCCAGTTCAATATGGGCAGCACCATAGTCCTGCTCTTCGAG
GCGCCAAAGAATTTCAAATTTGATATTATCGCCGGTCAGAAGATCCGCGT
TGGCGAGTCCCTCGGCCACATCGTCGGCTCCAAATGAAAATGGGAGCCAC
AATTATGTACCGAATCAGTGCAAAGTCCTGTCCCCCAACTGCTCAGATCA
CTTGTTGTATTAGCATTAGACGCTCGTGTCCTAGGCAAATGTATTTTGTG
AACATCCTGCGAAGCTAACTCTGTGTATTGTTGCCATTTCAGTAGTTTTA
AGCTATATTTTATACAATAAACGTCGAATTATATTTGAGAAAAAAAAAAA
AAAAAAA

LD21713.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5991.c 2418 CG5991.c 207..2097 1..1891 9455 100 Plus
CG5991-RA 2418 CG5991-RA 207..2097 1..1891 9455 100 Plus
CG5991-RC 1950 CG5991-RC 62..1950 1..1889 9445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19875121..19877009 1..1889 9310 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24051704..24053594 1..1891 9455 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23792535..23794425 1..1891 9455 100 Plus
Blast to na_te.dros performed 2019-03-16 15:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6449..6574 321..447 172 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2417 388..469 144 68.2 Plus

LD21713.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:03:26 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19875121..19877009 1..1889 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:02 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RB 1..1344 344..1687 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:03 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RB 1..1344 344..1687 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:17 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RA 1..1344 344..1687 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:17 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RB 1..1344 344..1687 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:39:56 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RA 1..1344 344..1687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:02:57 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RC 62..1950 1..1889 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:03 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RC 62..1950 1..1889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:17 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RA 213..2101 1..1889 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:18 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RC 62..1950 1..1889 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:56 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
CG5991-RA 213..2101 1..1889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:26 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24051704..24053592 1..1889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:26 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24051704..24053592 1..1889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:26 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24051704..24053592 1..1889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:17 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19877426..19879314 1..1889 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:49 Download gff for LD21713.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23792535..23794423 1..1889 100   Plus

LD21713.pep Sequence

Translation from 343 to 1686

> LD21713.pep
MVSYFVPRGRFLLKAGNLRQVVQQQHQPAQLQLQPIKGPQPQAQNASLPV
ARHLRQFSSNPASKEAPLHHRRPQHKQQPNPSQELAQIRRNILSRWTGFL
LRWAPMGICVFGAIEWQLQKNRCEKEGKPRTASELQSRIYCSLPLRIISR
CWGWLAACYLPPSLRPYVYGWYSNTFDVNLSEAMYPEYEHYNSLAEFFTR
PLKEGVRVIDQQAPLVSPADGKVLHFGSASDSLIEQVKGVSYSIEDFLGP
LETVEQANSGASYAQALKKKSDGSTELYQCVIYLAPGDYHRFHSPTAWKP
TIRRHFSGELLSVSPKVAGWLPGLFCLNERVLYMGQWKHGFFSYTAVGAT
NVGSVEIYMDADLKTNRWTGFNVGKHPPSTYEYDELVLNKELTEAPKEFG
KGDLVGQFNMGSTIVLLFEAPKNFKFDIIAGQKIRVGESLGHIVGSK*

LD21713.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17036-PA 448 GF17036-PA 1..448 1..447 2029 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11249-PA 447 GG11249-PA 1..447 1..447 2339 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18487-PA 437 GH18487-PA 1..436 1..447 1760 73.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pisd-PB 447 CG5991-PB 1..447 1..447 2389 100 Plus
Pisd-PC 447 CG5991-PC 1..447 1..447 2389 100 Plus
Pisd-PA 447 CG5991-PA 1..447 1..447 2389 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24632-PA 433 GI24632-PA 1..433 1..447 1793 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23396-PA 449 GL23396-PA 1..449 1..447 1904 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19281-PA 448 GA19281-PA 1..448 1..447 1891 79 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26553-PA 447 GM26553-PA 1..447 1..447 2383 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21059-PA 342 GD21059-PA 1..342 106..447 1842 99.7 Plus
Dsim\GD21058-PA 75 GD21058-PA 1..73 1..73 284 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14194-PA 435 GJ14194-PA 1..431 1..443 1790 75.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11150-PA 444 GK11150-PA 1..441 1..444 1791 75.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23441-PA 447 GE23441-PA 1..447 1..447 2340 96.9 Plus

LD21713.hyp Sequence

Translation from 343 to 1686

> LD21713.hyp
MVSYFVPRGRFLLKAGNLRQVVQQQHQPAQLQLQPIKGPQPQAQNASLPV
ARHLRQFSSNPASKEAPLHHRRPQHKQQPNPSQELAQIRRNILSRWTGFL
LRWAPMGICVFGAIEWQLQKNRCEKEGKPRTASELQSRIYCSLPLRIISR
CWGWLAACYLPPSLRPYVYGWYSNTFDVNLSEAMYPEYEHYNSLAEFFTR
PLKEGVRVIDQQAPLVSPADGKVLHFGSASDSLIEQVKGVSYSIEDFLGP
LETVEQANSGASYAQALKKKSDGSTELYQCVIYLAPGDYHRFHSPTAWKP
TIRRHFSGELLSVSPKVAGWLPGLFCLNERVLYMGQWKHGFFSYTAVGAT
NVGSVEIYMDADLKTNRWTGFNVGKHPPSTYEYDELVLNKELTEAPKEFG
KGDLVGQFNMGSTIVLLFEAPKNFKFDIIAGQKIRVGESLGHIVGSK*

LD21713.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5991-PB 447 CG5991-PB 1..447 1..447 2389 100 Plus
CG5991-PC 447 CG5991-PC 1..447 1..447 2389 100 Plus
CG5991-PA 447 CG5991-PA 1..447 1..447 2389 100 Plus