Clone LD21723 Report

Search the DGRC for LD21723

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:23
Vector:pOT2
Associated Gene/TranscriptRpn1-RA
Protein status:LD21723.pep: gold
Preliminary Size:3013
Sequenced Size:3006

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7762 2000-02-14 Blastp of sequenced clone
CG7762 2001-01-01 Release 2 assignment
CG7762 2003-01-01 Sim4 clustering to Release 3
Rpn1 2008-04-29 Release 5.5 accounting
Rpn1 2008-08-15 Release 5.9 accounting
Rpn1 2008-12-18 5.12 accounting

Clone Sequence Records

LD21723.complete Sequence

3006 bp (3006 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132182

> LD21723.complete
AACAAAGCCGCATAAACCGCATTACAATCGAAGAAAACGTAGTGCCAATT
AAATCCCTTAAGTCCGACAAGCTAGGAAAGAAATCATGACGGGCGAGACC
AAGCTGGAGAAGAAGCCGCTGAAGCCGGCGGCATCCGAAGGCGATGCCAA
GGATCCGAAGGCCAAGAAGGATGAAAAGAAGGACGGCAAGGACAAGGAGC
AGCAGCCGGAGCTCTCCGACGAGGACCAGCAGCTGCAGGAGGAGCTGGAG
CTGCTGGTGCAGCACTTGCAGGAGCCGGATGCCAAGCTCTACCAGCCGAC
GCTGGAGAGTATGGCCAAATTGATCAGAGCCTCCACGACGTCGATGACCT
CGGTGCCCAAGCCTTTGAAGTTCATGCGCCCGCACTACGAAACCATGAAG
ACGGTGTACAAGCACATGCCCAATGAGCAGGCTCGCCAGTTGTGCGCCGA
CATCATCTCAGTGCTCTCGATGACCATGGGCAGCGGCAAGGATTGCCTGG
CCTACCGATTCCTCTGCGATCGCAAGCAGCGCATCGGGGACTGGGGCCAT
GAGTATGTGCGTCATTTGTCTGGCGAAATTTCGGCCCACTATCACGATAC
AACGGGAGACTTTCGTGTACAGCTCATCGAACTGGTCAAGCAGATCATCC
CGTACAATATGGAGCACAATGCCGAGGCTGATGCCTGCGATCTGCTGATC
GAAATCGATCACTTGCACCTGCTGAGCGACTTTGTGGACGAGTCGGCCTA
TCCCCGCGTCTGTCTCTATCTGCAGTCCTGCTATCCGTATGTTCCCGACC
CGGACAACACCATTATCCTGGAAACCGCGCTCCAGCTGTCGCGCAAGTTC
AACCAGTACACACAGGCCATGCGACTGGCGTTGATGCTCAACGATATGGA
CAAGATCGGTGAGATCTTCAAGGAGCCCAAGGAGCCGGCCATGCAGAAGC
AGCTGGCCTTTATGCTGGCCCGCCAACAGATTTGCCTGGAGCTGGATGAA
TTGGTGCCGGACTACGATGATCTCATGGAGATCATGTCGAATGCTAATCT
GAACAAGCATTTCCTCAATCTGGCTCGCGAACTGGACATCATGGAGCCCA
AAACGCCTGAGGACATTTACAAGTCGCATTTGGACAACTCGCGCTCCCGC
TTTGCATCCATCCAGGTAGACTCTGCCAAGCAAAATCTGGCCGCTAGCTT
TGTAAATGGTTTTGTTAACGCCGGTTTCGGTGTGGACAAGTTGCTGTCGG
AAGACGGAAACAAATGGTTGTACAAGAACAAGGAGCACGGCATGCTCTCG
GCCACCGCATCGCTGGGTTTGATACTTCTGTGGGATGTGGATGGTGGTCT
GACCATGATCGATAAGTACTTGTACTCCACCGATGACAACATCAAGTCCG
GCGCTTTGCTGGCTTGCGGAATCGTCAACTGCGGCATCCGTAACGAAGTC
GATCCGGCTCATGCTCTGCTCTCCGATTATATCGACAACCAGAACTCCTG
CATGCGCGTTGGCGCCATCCTCGGTCTGGGCATCGCCTACGCTGGCTCCA
ATCGCTCCATTGTGATCGACACCCTGAAGACGGTCTTCTCGTTTGGCAGC
AACAACAAGAGTTCGGCCAGCGTGGAGATATTGGGTATTACGGCTCTGTC
GCTGGGTCTCATCAGTGTTGGTTCGTGCAATTCGGAGATCACCGAGATCT
TGCTGCAGACGATTATGGGTCTGACCAAGGCCGATCTGAAGGACACCTAC
ACGAGGTTCCTGTTTTTGGGTCTGGGTCTGCTTTACTTGGGCCGCCAAAA
GTCCACCGAAGCCGTGATGATGACCTTGGAGGTTTTGGAAGAGCCGTACC
GCAGCATGGCCACTACCATGGTGGACATTTGCGCATACGCTGGTACTGGC
AACGTCCTCAAGATCCAACAGCTGCTCCACATCTGCTCCGATCACTACGA
GACGTCCAGTGCCGATGACGAGAAGGAAAAGAGCAAGAAGGACAAGGGCA
AGGATAAGGAAAAGGAGAAGGAGAAAGAGAAGGAAAAGGAACGCGAGAAG
GACTTGTCGGCCACCCAATCGATCGCCGTGCTGGGAATTGCCCTGATCGC
CATGGGCGAGGACATTGGTGCCGAAATGGCATACCGCTCGTTTGGAAACC
TGCTGCGCTATTGCGAGCCAGCCATTCGTCGGGCCGTACCACTGGCATTG
GGCCTGATATCCGCCTCCAATCCCAAGCTGAACATCATCGACACGCTGAG
CAAGTTCTCGCACGATAGCGACGCCGAGGTGGCCCACAATGCGATCTTCG
CCATGGGCTTGGTGGGCGCCGGCACGAATAACGCTCGGCTGGCCTCCATG
CTACGCCAGTTGGCGCAGTACCATTCTAAGGATCCCAGCAATCTGTTCAT
GGTGCGCATCGCCCAGAGCTTGACGCACTTGGGCAAGGGCACGCTCTCGC
TGAGTCCCTACCACAGCGATAGGCAGCTGATGAACCCCATGGCCGTCGCT
GGACTGATGGCTACGCTGGTTTCCCTGCTGGACGTGAAGAACCTGATACT
GAACCGATCGCACTATCTGCTCTACACACTGGTGCCTGCCATGCAGGCTC
GCATGCTGATCACCTTCGATGAGGAGCTCAATCAGCTGCAGGTGCCCGTG
CGCGTCGGCATTGCCATCGATGTGGTCGGCCAGGCAGGCAAGCCGAAGAC
CATCACCGGCTTCCAAACGCACACCACGCCCGTCCTGCTGGCCATTGGCG
AGCGCGCCGAGCTGGCCACCGATGAGTATCTGGCCCTCACTCCGGTCATG
GAGGGCTTCGTTATACTGAAAAAGAACCCAAATTTTGTGAAATAGAAGTG
CATTCAAACATTTAACGTTTAAGGTCATGCGAGAAACTGAAGTTCAGCCA
CTAACTCCCAATAATTATTTGTTCCCCCCACTGGCAGTTGATTCAAATGA
TTCAATTAATACGAAATATATCTACATATAAAGAATAAAAAAAAAAAAAA
AAAAAA

LD21723.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn1-RA 3255 Rpn1-RA 206..3194 1..2989 14945 100 Plus
Rpn1.a 3035 Rpn1.a 51..3033 1..2989 14830 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19904432..19906440 1..2009 10000 99.9 Plus
chr3L 24539361 chr3L 19906507..19907486 2007..2986 4870 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19915106..19917114 1..2009 10045 100 Plus
3L 28110227 3L 19917181..19918163 2007..2989 4915 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19908206..19910214 1..2009 10045 100 Plus
3L 28103327 3L 19910281..19911263 2007..2989 4915 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:14:02 has no hits.

LD21723.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:43 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19904432..19906440 1..2009 99 == Plus
chr3L 19906541..19907486 2041..2986 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:09 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 1..2760 86..2845 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:44 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 1..2760 86..2845 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:50:00 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 1..2760 86..2845 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:11:39 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 1..2760 86..2845 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:37 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 1..2760 86..2845 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:38:47 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 51..3036 1..2986 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:44 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 51..3036 1..2986 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:00 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 56..3041 1..2986 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:11:39 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 51..3036 1..2986 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:37 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn1-RA 56..3041 1..2986 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:43 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19915106..19917113 1..2008 100 -> Plus
3L 19917183..19918160 2009..2986 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:43 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19915106..19917113 1..2008 100 -> Plus
3L 19917183..19918160 2009..2986 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:43 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19915106..19917113 1..2008 100 -> Plus
3L 19917183..19918160 2009..2986 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:00 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19908206..19910213 1..2008 100 -> Plus
arm_3L 19910283..19911260 2009..2986 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:48:04 Download gff for LD21723.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19908206..19910213 1..2008 100 -> Plus
3L 19910283..19911260 2009..2986 100   Plus

LD21723.pep Sequence

Translation from 85 to 2844

> LD21723.pep
MTGETKLEKKPLKPAASEGDAKDPKAKKDEKKDGKDKEQQPELSDEDQQL
QEELELLVQHLQEPDAKLYQPTLESMAKLIRASTTSMTSVPKPLKFMRPH
YETMKTVYKHMPNEQARQLCADIISVLSMTMGSGKDCLAYRFLCDRKQRI
GDWGHEYVRHLSGEISAHYHDTTGDFRVQLIELVKQIIPYNMEHNAEADA
CDLLIEIDHLHLLSDFVDESAYPRVCLYLQSCYPYVPDPDNTIILETALQ
LSRKFNQYTQAMRLALMLNDMDKIGEIFKEPKEPAMQKQLAFMLARQQIC
LELDELVPDYDDLMEIMSNANLNKHFLNLARELDIMEPKTPEDIYKSHLD
NSRSRFASIQVDSAKQNLAASFVNGFVNAGFGVDKLLSEDGNKWLYKNKE
HGMLSATASLGLILLWDVDGGLTMIDKYLYSTDDNIKSGALLACGIVNCG
IRNEVDPAHALLSDYIDNQNSCMRVGAILGLGIAYAGSNRSIVIDTLKTV
FSFGSNNKSSASVEILGITALSLGLISVGSCNSEITEILLQTIMGLTKAD
LKDTYTRFLFLGLGLLYLGRQKSTEAVMMTLEVLEEPYRSMATTMVDICA
YAGTGNVLKIQQLLHICSDHYETSSADDEKEKSKKDKGKDKEKEKEKEKE
KEREKDLSATQSIAVLGIALIAMGEDIGAEMAYRSFGNLLRYCEPAIRRA
VPLALGLISASNPKLNIIDTLSKFSHDSDAEVAHNAIFAMGLVGAGTNNA
RLASMLRQLAQYHSKDPSNLFMVRIAQSLTHLGKGTLSLSPYHSDRQLMN
PMAVAGLMATLVSLLDVKNLILNRSHYLLYTLVPAMQARMLITFDEELNQ
LQVPVRVGIAIDVVGQAGKPKTITGFQTHTTPVLLAIGERAELATDEYLA
LTPVMEGFVILKKNPNFVK*

LD21723.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23601-PA 923 GF23601-PA 1..923 1..919 4305 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16067-PA 919 GG16067-PA 1..919 1..919 4865 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14666-PA 931 GH14666-PA 1..931 1..919 4312 90.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn1-PA 919 CG7762-PA 1..919 1..919 4689 100 Plus
Rpn2-PC 1020 CG11888-PC 333..620 325..616 187 25.2 Plus
Rpn2-PA 1020 CG11888-PA 333..620 325..616 187 25.2 Plus
Rpn2-PB 1029 CG11888-PB 333..620 325..616 187 25.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11652-PA 921 GI11652-PA 1..921 1..919 4306 90.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22667-PA 917 GL22667-PA 1..917 1..919 4317 93.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20570-PA 918 GA20570-PA 1..918 1..919 4312 92.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19685-PA 919 GM19685-PA 1..919 1..919 4891 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14837-PA 919 GD14837-PA 1..919 1..919 4900 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11331-PA 913 GJ11331-PA 1..913 1..919 4334 92.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16700-PA 921 GK16700-PA 1..921 1..919 4290 92.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19634-PA 919 GE19634-PA 1..919 1..919 4846 98.3 Plus

LD21723.hyp Sequence

Translation from 85 to 2844

> LD21723.hyp
MTGETKLEKKPLKPAASEGDAKDPKAKKDEKKDGKDKEQQPELSDEDQQL
QEELELLVQHLQEPDAKLYQPTLESMAKLIRASTTSMTSVPKPLKFMRPH
YETMKTVYKHMPNEQARQLCADIISVLSMTMGSGKDCLAYRFLCDRKQRI
GDWGHEYVRHLSGEISAHYHDTTGDFRVQLIELVKQIIPYNMEHNAEADA
CDLLIEIDHLHLLSDFVDESAYPRVCLYLQSCYPYVPDPDNTIILETALQ
LSRKFNQYTQAMRLALMLNDMDKIGEIFKEPKEPAMQKQLAFMLARQQIC
LELDELVPDYDDLMEIMSNANLNKHFLNLARELDIMEPKTPEDIYKSHLD
NSRSRFASIQVDSAKQNLAASFVNGFVNAGFGVDKLLSEDGNKWLYKNKE
HGMLSATASLGLILLWDVDGGLTMIDKYLYSTDDNIKSGALLACGIVNCG
IRNEVDPAHALLSDYIDNQNSCMRVGAILGLGIAYAGSNRSIVIDTLKTV
FSFGSNNKSSASVEILGITALSLGLISVGSCNSEITEILLQTIMGLTKAD
LKDTYTRFLFLGLGLLYLGRQKSTEAVMMTLEVLEEPYRSMATTMVDICA
YAGTGNVLKIQQLLHICSDHYETSSADDEKEKSKKDKGKDKEKEKEKEKE
KEREKDLSATQSIAVLGIALIAMGEDIGAEMAYRSFGNLLRYCEPAIRRA
VPLALGLISASNPKLNIIDTLSKFSHDSDAEVAHNAIFAMGLVGAGTNNA
RLASMLRQLAQYHSKDPSNLFMVRIAQSLTHLGKGTLSLSPYHSDRQLMN
PMAVAGLMATLVSLLDVKNLILNRSHYLLYTLVPAMQARMLITFDEELNQ
LQVPVRVGIAIDVVGQAGKPKTITGFQTHTTPVLLAIGERAELATDEYLA
LTPVMEGFVILKKNPNFVK*

LD21723.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn1-PA 919 CG7762-PA 1..919 1..919 4689 100 Plus
Rpn2-PC 1020 CG11888-PC 333..620 325..616 187 25.2 Plus
Rpn2-PA 1020 CG11888-PA 333..620 325..616 187 25.2 Plus
Rpn2-PB 1029 CG11888-PB 333..620 325..616 187 25.2 Plus