BDGP Sequence Production Resources |
Search the DGRC for LD21727
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 217 |
Well: | 27 |
Vector: | pOT2 |
Associated Gene/Transcript | CG12213-RB |
Protein status: | LD21727.pep: gold |
Sequenced Size: | 1659 |
Gene | Date | Evidence |
---|---|---|
CG12213 | 2008-05-27 | Manual selection by Ken Wan |
CG12213 | 2008-12-18 | 5.12 accounting |
1659 bp assembled on 2008-11-21
GenBank Submission: BT053724.1
> LD21727.complete CAATTTGTTGATTTACTAGCTTAAATCGAGTGTAAAATGAGTTCGGCTCG CTTCGCGCGCTCAGGGCGCGTCCGTATCTGCATCCTGATGAGCATGTTCA TCGTGCTCATCATGATGATTGTTATCTACCAAATGTCCCAACACCAATTG GACGAGAGCCGCGCCTTCCAAGAGGGCCTCAGTGTCCAGATGCAATCCCT GAATGCCGAAAAACTTACCGCCGAGAAGAGAATGAGCGCGCTGCGCTCGG AAAAGATGACCCTGCAGGAGCAGTACGAGGGTCAGTTGGCGGAGGCACTG CAGAAGCAGCACGACACGGAACACGCACTGCAGGAGAAGTTCGACGCTCA GGTGGAAAAGTACAAGCTGCTGGAGATTAAGTACACCAACCTGGAGGCCG AGTTCGTCAAGAGCAAGAAGAAACACATCGAGGACACGAACGCTTTCGAC CAAAAGCTGCAAAAGGTCCTGGCGGATCTTCATAAGGACAAGGCCAGCAA GGAGCGCGAGGTGGCTGCCTGGAAGGAAAAGCTGGACAAGCTACAGCGCG ATGGTGAGCACAAGATTCACGCCCTGGAAGCCACAATTGCGGAATTCAAG ACCAACTGCAACTATGTACCTAAAGTCCAGCCCGCCGAGGCACCGGTCCA GGGACACCAGCAGCAACTGAATAAGCCCGCCGAGCAGATGCCCACCACGC ACCACTCAAATCCTGCCCAGCTAGCGCACAGCATTGAAAAGCCCCGCAAC GAGAAGTCCTTCGATGCCCAAGTGCAAATTGTGCCCAAATCGGTCAGTGA GAAGCAACAGCAGGAGGAGCCGCAACTATCCGGCGGTCCTGTTTCCCCGT TAAGTGCACCCCGCAAGAGCAGCACCCAAGCCTCAGTGGGCAGCGCTTCG GACAAGAAAGCCGGTGATGCCCCCAACGCATCTGTAGCCCCAAAAGTTAG TAGCAGCGGCCTTCCCCCGCTTGCAGTGCCACCAGCGAAGACTGAGCGCA AACTTCCCGAAAACGTGGCTCCCATTCCCGAGAACTTTGAAGACAAAGCG GATACTAAGGGCGACGCTGTCGATGTAGACAACGCCGCCGAAGACCTGCC GAAGAACGAGAACAACAATCGTTACGCCAACGCAGTAAATGATATGGAGG GCAACAAAAATGTAGGCGTAGCTCCCAAACCCATCGAGGATTCGGGCGCT CACGAAGTTAAGGATGCGTTAAACGAGCCTAGCTTTAATTTGCCCGCCGC TGGTGGCGGCCAGAATTTCTTCGATGGCGAATTGCCGGCACCTGGTCCCG GACCCGTTCCCGATGAAACGGCCAAACAGATGGCCGAGGCAGCCGGTGCC GGAGGAGGTGGCGACGGAGATGACGACGACGATGTGGGTGATGTGGCCGT GAAACAGCCACAGCATTTGCTCGATACAGACAATCTAAACAACGAAATCG TTGCTGACCAGGGTAAGGAGTTCGCCGAAGGCATCCACCTGGAAGACGGC ATGGATGAAGATCAAGATGAGGACGACTATTCCAATGGTGGTGCAGCACG CAAGAAGGGAGGCGAGGTTATTAGACACTAAGTAAGATAATTTTCTATTA ATATTGAGCGGCAAGTGTGCAAAGGCTTAGAAACCCCTTTAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12213-RB | 2640 | CG12213-RB | 309..1949 | 1..1641 | 8205 | 100 | Plus |
CG12213.e | 2165 | CG12213.e | 132..908 | 1..777 | 3885 | 100 | Plus |
CG12213.f | 2429 | CG12213.f | 132..908 | 1..777 | 3885 | 100 | Plus |
CG12213.e | 2165 | CG12213.e | 1110..1851 | 778..1519 | 3710 | 100 | Plus |
CG12213.f | 2429 | CG12213.f | 1110..1851 | 778..1519 | 3710 | 100 | Plus |
CG12213.e | 2165 | CG12213.e | 1909..2031 | 1519..1641 | 615 | 100 | Plus |
CG12213.f | 2429 | CG12213.f | 1909..2031 | 1519..1641 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7790952..7791693 | 1519..778 | 3665 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 7792203..7792532 | 526..197 | 1650 | 100 | Minus |
chr3R | 27901430 | chr3R | 7791895..7792148 | 777..524 | 1270 | 100 | Minus |
chr3R | 27901430 | chr3R | 7792595..7792790 | 196..1 | 980 | 100 | Minus |
chr3R | 27901430 | chr3R | 7790773..7790894 | 1640..1519 | 610 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 11965545..11966286 | 1519..778 | 3710 | 100 | Minus |
3R | 32079331 | 3R | 11966796..11967125 | 526..197 | 1650 | 100 | Minus |
3R | 32079331 | 3R | 11966488..11966741 | 777..524 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 11967188..11967383 | 196..1 | 980 | 100 | Minus |
3R | 32079331 | 3R | 11965365..11965487 | 1641..1519 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11706376..11707117 | 1519..778 | 3710 | 100 | Minus |
3R | 31820162 | 3R | 11707627..11707956 | 526..197 | 1650 | 100 | Minus |
3R | 31820162 | 3R | 11707319..11707572 | 777..524 | 1270 | 100 | Minus |
3R | 31820162 | 3R | 11708019..11708214 | 196..1 | 980 | 100 | Minus |
3R | 31820162 | 3R | 11706196..11706318 | 1641..1519 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-A | 13424 | TART-A 13424bp | 223..267 | 1342..1386 | 117 | 73.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 11401..11445 | 1342..1386 | 117 | 73.3 | Plus |
G4 | 3856 | G4 G4_DM 3856bp | 2192..2246 | 1382..1436 | 113 | 67.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7790773..7790893 | 1520..1640 | 100 | <- | Minus |
chr3R | 7790952..7791693 | 778..1519 | 99 | <- | Minus |
chr3R | 7791895..7792146 | 526..777 | 100 | <- | Minus |
chr3R | 7792204..7792532 | 197..525 | 100 | <- | Minus |
chr3R | 7792595..7792790 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12213-RB | 1..1545 | 37..1581 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12213-RB | 1..1545 | 37..1581 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12213-RB | 1..1545 | 37..1581 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12213-RB | 1..1545 | 37..1581 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12213-RB | 132..1771 | 1..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12213-RB | 132..1771 | 1..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12213-RB | 75..1714 | 1..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12213-RB | 75..1714 | 1..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11965366..11965486 | 1520..1640 | 100 | <- | Minus |
3R | 11965545..11966286 | 778..1519 | 100 | <- | Minus |
3R | 11966488..11966739 | 526..777 | 100 | <- | Minus |
3R | 11966797..11967125 | 197..525 | 100 | <- | Minus |
3R | 11967188..11967383 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11965366..11965486 | 1520..1640 | 100 | <- | Minus |
3R | 11965545..11966286 | 778..1519 | 100 | <- | Minus |
3R | 11966488..11966739 | 526..777 | 100 | <- | Minus |
3R | 11966797..11967125 | 197..525 | 100 | <- | Minus |
3R | 11967188..11967383 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11965366..11965486 | 1520..1640 | 100 | <- | Minus |
3R | 11965545..11966286 | 778..1519 | 100 | <- | Minus |
3R | 11966488..11966739 | 526..777 | 100 | <- | Minus |
3R | 11966797..11967125 | 197..525 | 100 | <- | Minus |
3R | 11967188..11967383 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7791088..7791208 | 1520..1640 | 100 | <- | Minus |
arm_3R | 7791267..7792008 | 778..1519 | 100 | <- | Minus |
arm_3R | 7792210..7792461 | 526..777 | 100 | <- | Minus |
arm_3R | 7792519..7792847 | 197..525 | 100 | <- | Minus |
arm_3R | 7792910..7793105 | 1..196 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11706376..11707117 | 778..1519 | 100 | <- | Minus |
3R | 11707319..11707570 | 526..777 | 100 | <- | Minus |
3R | 11707628..11707956 | 197..525 | 100 | <- | Minus |
3R | 11708019..11708214 | 1..196 | 100 | Minus | |
3R | 11706197..11706317 | 1520..1640 | 100 | <- | Minus |
Translation from 36 to 1580
> LD21727.pep MSSARFARSGRVRICILMSMFIVLIMMIVIYQMSQHQLDESRAFQEGLSV QMQSLNAEKLTAEKRMSALRSEKMTLQEQYEGQLAEALQKQHDTEHALQE KFDAQVEKYKLLEIKYTNLEAEFVKSKKKHIEDTNAFDQKLQKVLADLHK DKASKEREVAAWKEKLDKLQRDGEHKIHALEATIAEFKTNCNYVPKVQPA EAPVQGHQQQLNKPAEQMPTTHHSNPAQLAHSIEKPRNEKSFDAQVQIVP KSVSEKQQQEEPQLSGGPVSPLSAPRKSSTQASVGSASDKKAGDAPNASV APKVSSSGLPPLAVPPAKTERKLPENVAPIPENFEDKADTKGDAVDVDNA AEDLPKNENNNRYANAVNDMEGNKNVGVAPKPIEDSGAHEVKDALNEPSF NLPAAGGGQNFFDGELPAPGPGPVPDETAKQMAEAAGAGGGGDGDDDDDV GDVAVKQPQHLLDTDNLNNEIVADQGKEFAEGIHLEDGMDEDQDEDDYSN GGAARKKGGEVIRH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17153-PA | 514 | GF17153-PA | 1..514 | 1..514 | 2051 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17176-PA | 513 | GG17176-PA | 1..512 | 1..513 | 2446 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13050-PA | 519 | GH13050-PA | 1..514 | 1..510 | 814 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12213-PD | 514 | CG12213-PD | 1..514 | 1..514 | 2647 | 100 | Plus |
CG12213-PB | 514 | CG12213-PB | 1..514 | 1..514 | 2647 | 100 | Plus |
CG12213-PE | 525 | CG12213-PE | 1..525 | 1..514 | 2625 | 97.9 | Plus |
CG12213-PC | 581 | CG12213-PC | 1..581 | 1..514 | 1926 | 70.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24068-PA | 505 | GI24068-PA | 1..500 | 1..510 | 1194 | 54.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21591-PA | 504 | GL21591-PA | 1..504 | 1..514 | 1905 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11482-PB | 515 | GA11482-PB | 1..515 | 1..514 | 1954 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26056-PA | 514 | GM26056-PA | 1..514 | 1..514 | 2651 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20619-PA | 514 | GD20619-PA | 1..514 | 1..514 | 2656 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23716-PA | 505 | GJ23716-PA | 1..491 | 1..499 | 1188 | 53.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13766-PA | 525 | GK13766-PA | 1..525 | 1..514 | 1516 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24567-PA | 513 | GE24567-PA | 1..512 | 1..513 | 2461 | 95.7 | Plus |
Translation from 36 to 1580
> LD21727.hyp MSSARFARSGRVRICILMSMFIVLIMMIVIYQMSQHQLDESRAFQEGLSV QMQSLNAEKLTAEKRMSALRSEKMTLQEQYEGQLAEALQKQHDTEHALQE KFDAQVEKYKLLEIKYTNLEAEFVKSKKKHIEDTNAFDQKLQKVLADLHK DKASKEREVAAWKEKLDKLQRDGEHKIHALEATIAEFKTNCNYVPKVQPA EAPVQGHQQQLNKPAEQMPTTHHSNPAQLAHSIEKPRNEKSFDAQVQIVP KSVSEKQQQEEPQLSGGPVSPLSAPRKSSTQASVGSASDKKAGDAPNASV APKVSSSGLPPLAVPPAKTERKLPENVAPIPENFEDKADTKGDAVDVDNA AEDLPKNENNNRYANAVNDMEGNKNVGVAPKPIEDSGAHEVKDALNEPSF NLPAAGGGQNFFDGELPAPGPGPVPDETAKQMAEAAGAGGGGDGDDDDDV GDVAVKQPQHLLDTDNLNNEIVADQGKEFAEGIHLEDGMDEDQDEDDYSN GGAARKKGGEVIRH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12213-PD | 514 | CG12213-PD | 1..514 | 1..514 | 2647 | 100 | Plus |
CG12213-PB | 514 | CG12213-PB | 1..514 | 1..514 | 2647 | 100 | Plus |
CG12213-PE | 525 | CG12213-PE | 1..525 | 1..514 | 2625 | 97.9 | Plus |
CG12213-PC | 581 | CG12213-PC | 1..581 | 1..514 | 1926 | 70.5 | Plus |