Clone LD21727 Report

Search the DGRC for LD21727

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:27
Vector:pOT2
Associated Gene/TranscriptCG12213-RB
Protein status:LD21727.pep: gold
Sequenced Size:1659

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12213 2008-05-27 Manual selection by Ken Wan
CG12213 2008-12-18 5.12 accounting

Clone Sequence Records

LD21727.complete Sequence

1659 bp assembled on 2008-11-21

GenBank Submission: BT053724.1

> LD21727.complete
CAATTTGTTGATTTACTAGCTTAAATCGAGTGTAAAATGAGTTCGGCTCG
CTTCGCGCGCTCAGGGCGCGTCCGTATCTGCATCCTGATGAGCATGTTCA
TCGTGCTCATCATGATGATTGTTATCTACCAAATGTCCCAACACCAATTG
GACGAGAGCCGCGCCTTCCAAGAGGGCCTCAGTGTCCAGATGCAATCCCT
GAATGCCGAAAAACTTACCGCCGAGAAGAGAATGAGCGCGCTGCGCTCGG
AAAAGATGACCCTGCAGGAGCAGTACGAGGGTCAGTTGGCGGAGGCACTG
CAGAAGCAGCACGACACGGAACACGCACTGCAGGAGAAGTTCGACGCTCA
GGTGGAAAAGTACAAGCTGCTGGAGATTAAGTACACCAACCTGGAGGCCG
AGTTCGTCAAGAGCAAGAAGAAACACATCGAGGACACGAACGCTTTCGAC
CAAAAGCTGCAAAAGGTCCTGGCGGATCTTCATAAGGACAAGGCCAGCAA
GGAGCGCGAGGTGGCTGCCTGGAAGGAAAAGCTGGACAAGCTACAGCGCG
ATGGTGAGCACAAGATTCACGCCCTGGAAGCCACAATTGCGGAATTCAAG
ACCAACTGCAACTATGTACCTAAAGTCCAGCCCGCCGAGGCACCGGTCCA
GGGACACCAGCAGCAACTGAATAAGCCCGCCGAGCAGATGCCCACCACGC
ACCACTCAAATCCTGCCCAGCTAGCGCACAGCATTGAAAAGCCCCGCAAC
GAGAAGTCCTTCGATGCCCAAGTGCAAATTGTGCCCAAATCGGTCAGTGA
GAAGCAACAGCAGGAGGAGCCGCAACTATCCGGCGGTCCTGTTTCCCCGT
TAAGTGCACCCCGCAAGAGCAGCACCCAAGCCTCAGTGGGCAGCGCTTCG
GACAAGAAAGCCGGTGATGCCCCCAACGCATCTGTAGCCCCAAAAGTTAG
TAGCAGCGGCCTTCCCCCGCTTGCAGTGCCACCAGCGAAGACTGAGCGCA
AACTTCCCGAAAACGTGGCTCCCATTCCCGAGAACTTTGAAGACAAAGCG
GATACTAAGGGCGACGCTGTCGATGTAGACAACGCCGCCGAAGACCTGCC
GAAGAACGAGAACAACAATCGTTACGCCAACGCAGTAAATGATATGGAGG
GCAACAAAAATGTAGGCGTAGCTCCCAAACCCATCGAGGATTCGGGCGCT
CACGAAGTTAAGGATGCGTTAAACGAGCCTAGCTTTAATTTGCCCGCCGC
TGGTGGCGGCCAGAATTTCTTCGATGGCGAATTGCCGGCACCTGGTCCCG
GACCCGTTCCCGATGAAACGGCCAAACAGATGGCCGAGGCAGCCGGTGCC
GGAGGAGGTGGCGACGGAGATGACGACGACGATGTGGGTGATGTGGCCGT
GAAACAGCCACAGCATTTGCTCGATACAGACAATCTAAACAACGAAATCG
TTGCTGACCAGGGTAAGGAGTTCGCCGAAGGCATCCACCTGGAAGACGGC
ATGGATGAAGATCAAGATGAGGACGACTATTCCAATGGTGGTGCAGCACG
CAAGAAGGGAGGCGAGGTTATTAGACACTAAGTAAGATAATTTTCTATTA
ATATTGAGCGGCAAGTGTGCAAAGGCTTAGAAACCCCTTTAAAAAAAAAA
AAAAAAAAA

LD21727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12213-RB 2640 CG12213-RB 309..1949 1..1641 8205 100 Plus
CG12213.e 2165 CG12213.e 132..908 1..777 3885 100 Plus
CG12213.f 2429 CG12213.f 132..908 1..777 3885 100 Plus
CG12213.e 2165 CG12213.e 1110..1851 778..1519 3710 100 Plus
CG12213.f 2429 CG12213.f 1110..1851 778..1519 3710 100 Plus
CG12213.e 2165 CG12213.e 1909..2031 1519..1641 615 100 Plus
CG12213.f 2429 CG12213.f 1909..2031 1519..1641 615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7790952..7791693 1519..778 3665 99.6 Minus
chr3R 27901430 chr3R 7792203..7792532 526..197 1650 100 Minus
chr3R 27901430 chr3R 7791895..7792148 777..524 1270 100 Minus
chr3R 27901430 chr3R 7792595..7792790 196..1 980 100 Minus
chr3R 27901430 chr3R 7790773..7790894 1640..1519 610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11965545..11966286 1519..778 3710 100 Minus
3R 32079331 3R 11966796..11967125 526..197 1650 100 Minus
3R 32079331 3R 11966488..11966741 777..524 1270 100 Minus
3R 32079331 3R 11967188..11967383 196..1 980 100 Minus
3R 32079331 3R 11965365..11965487 1641..1519 615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11706376..11707117 1519..778 3710 100 Minus
3R 31820162 3R 11707627..11707956 526..197 1650 100 Minus
3R 31820162 3R 11707319..11707572 777..524 1270 100 Minus
3R 31820162 3R 11708019..11708214 196..1 980 100 Minus
3R 31820162 3R 11706196..11706318 1641..1519 615 100 Minus
Blast to na_te.dros performed 2019-03-16 15:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 223..267 1342..1386 117 73.3 Plus
TART-A 13424 TART-A 13424bp 11401..11445 1342..1386 117 73.3 Plus
G4 3856 G4 G4_DM 3856bp 2192..2246 1382..1436 113 67.3 Plus

LD21727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:03:41 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7790773..7790893 1520..1640 100 <- Minus
chr3R 7790952..7791693 778..1519 99 <- Minus
chr3R 7791895..7792146 526..777 100 <- Minus
chr3R 7792204..7792532 197..525 100 <- Minus
chr3R 7792595..7792790 1..196 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:10 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 1..1545 37..1581 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:20:36 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 1..1545 37..1581 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:30 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 1..1545 37..1581 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:40:22 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 1..1545 37..1581 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-21 13:29:38 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 132..1771 1..1640 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:20:36 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 132..1771 1..1640 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:30 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 75..1714 1..1640 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:22 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 75..1714 1..1640 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:41 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11965366..11965486 1520..1640 100 <- Minus
3R 11965545..11966286 778..1519 100 <- Minus
3R 11966488..11966739 526..777 100 <- Minus
3R 11966797..11967125 197..525 100 <- Minus
3R 11967188..11967383 1..196 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:41 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11965366..11965486 1520..1640 100 <- Minus
3R 11965545..11966286 778..1519 100 <- Minus
3R 11966488..11966739 526..777 100 <- Minus
3R 11966797..11967125 197..525 100 <- Minus
3R 11967188..11967383 1..196 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:41 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11965366..11965486 1520..1640 100 <- Minus
3R 11965545..11966286 778..1519 100 <- Minus
3R 11966488..11966739 526..777 100 <- Minus
3R 11966797..11967125 197..525 100 <- Minus
3R 11967188..11967383 1..196 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:30 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7791088..7791208 1520..1640 100 <- Minus
arm_3R 7791267..7792008 778..1519 100 <- Minus
arm_3R 7792210..7792461 526..777 100 <- Minus
arm_3R 7792519..7792847 197..525 100 <- Minus
arm_3R 7792910..7793105 1..196 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:52:06 Download gff for LD21727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11706376..11707117 778..1519 100 <- Minus
3R 11707319..11707570 526..777 100 <- Minus
3R 11707628..11707956 197..525 100 <- Minus
3R 11708019..11708214 1..196 100   Minus
3R 11706197..11706317 1520..1640 100 <- Minus

LD21727.pep Sequence

Translation from 36 to 1580

> LD21727.pep
MSSARFARSGRVRICILMSMFIVLIMMIVIYQMSQHQLDESRAFQEGLSV
QMQSLNAEKLTAEKRMSALRSEKMTLQEQYEGQLAEALQKQHDTEHALQE
KFDAQVEKYKLLEIKYTNLEAEFVKSKKKHIEDTNAFDQKLQKVLADLHK
DKASKEREVAAWKEKLDKLQRDGEHKIHALEATIAEFKTNCNYVPKVQPA
EAPVQGHQQQLNKPAEQMPTTHHSNPAQLAHSIEKPRNEKSFDAQVQIVP
KSVSEKQQQEEPQLSGGPVSPLSAPRKSSTQASVGSASDKKAGDAPNASV
APKVSSSGLPPLAVPPAKTERKLPENVAPIPENFEDKADTKGDAVDVDNA
AEDLPKNENNNRYANAVNDMEGNKNVGVAPKPIEDSGAHEVKDALNEPSF
NLPAAGGGQNFFDGELPAPGPGPVPDETAKQMAEAAGAGGGGDGDDDDDV
GDVAVKQPQHLLDTDNLNNEIVADQGKEFAEGIHLEDGMDEDQDEDDYSN
GGAARKKGGEVIRH*

LD21727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17153-PA 514 GF17153-PA 1..514 1..514 2051 79.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17176-PA 513 GG17176-PA 1..512 1..513 2446 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13050-PA 519 GH13050-PA 1..514 1..510 814 45.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12213-PD 514 CG12213-PD 1..514 1..514 2647 100 Plus
CG12213-PB 514 CG12213-PB 1..514 1..514 2647 100 Plus
CG12213-PE 525 CG12213-PE 1..525 1..514 2625 97.9 Plus
CG12213-PC 581 CG12213-PC 1..581 1..514 1926 70.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24068-PA 505 GI24068-PA 1..500 1..510 1194 54.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21591-PA 504 GL21591-PA 1..504 1..514 1905 78.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11482-PB 515 GA11482-PB 1..515 1..514 1954 77.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26056-PA 514 GM26056-PA 1..514 1..514 2651 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20619-PA 514 GD20619-PA 1..514 1..514 2656 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23716-PA 505 GJ23716-PA 1..491 1..499 1188 53.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13766-PA 525 GK13766-PA 1..525 1..514 1516 64 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24567-PA 513 GE24567-PA 1..512 1..513 2461 95.7 Plus

LD21727.hyp Sequence

Translation from 36 to 1580

> LD21727.hyp
MSSARFARSGRVRICILMSMFIVLIMMIVIYQMSQHQLDESRAFQEGLSV
QMQSLNAEKLTAEKRMSALRSEKMTLQEQYEGQLAEALQKQHDTEHALQE
KFDAQVEKYKLLEIKYTNLEAEFVKSKKKHIEDTNAFDQKLQKVLADLHK
DKASKEREVAAWKEKLDKLQRDGEHKIHALEATIAEFKTNCNYVPKVQPA
EAPVQGHQQQLNKPAEQMPTTHHSNPAQLAHSIEKPRNEKSFDAQVQIVP
KSVSEKQQQEEPQLSGGPVSPLSAPRKSSTQASVGSASDKKAGDAPNASV
APKVSSSGLPPLAVPPAKTERKLPENVAPIPENFEDKADTKGDAVDVDNA
AEDLPKNENNNRYANAVNDMEGNKNVGVAPKPIEDSGAHEVKDALNEPSF
NLPAAGGGQNFFDGELPAPGPGPVPDETAKQMAEAAGAGGGGDGDDDDDV
GDVAVKQPQHLLDTDNLNNEIVADQGKEFAEGIHLEDGMDEDQDEDDYSN
GGAARKKGGEVIRH*

LD21727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12213-PD 514 CG12213-PD 1..514 1..514 2647 100 Plus
CG12213-PB 514 CG12213-PB 1..514 1..514 2647 100 Plus
CG12213-PE 525 CG12213-PE 1..525 1..514 2625 97.9 Plus
CG12213-PC 581 CG12213-PC 1..581 1..514 1926 70.5 Plus