Clone LD21729 Report

Search the DGRC for LD21729

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:29
Vector:pOT2
Associated Gene/TranscriptTrxr-1-RA
Protein status:LD21729.pep: gold
Preliminary Size:1300
Sequenced Size:1985

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2151 2002-12-11 Blastp of sequenced clone
CG2151 2003-01-01 Sim4 clustering to Release 3
Trxr-1 2008-04-29 Release 5.5 accounting
Trxr-1 2008-08-15 Release 5.9 accounting
Trxr-1 2008-12-18 5.12 accounting

Clone Sequence Records

LD21729.complete Sequence

1985 bp (1985 high quality bases) assembled on 2002-12-11

GenBank Submission: BT003266

> LD21729.complete
CCGCTACAATACACGCTTAGCAGTTTTTACATTTCCGCTTCGACTACAAC
AACATTCACTACCCGCCGTTGATCCTTGTTTTCTGTCTGATTTACGTGGA
GCACCTACCAACAAGCAACAAAATAATGGCGCCCGTGCAAGGATCCTACG
ACTACGACCTTATTGTGATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCC
AAGGAGGCAGTCCTCAATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAA
GCCCACGCCCACTCTGGGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGA
ACGTGGGCTGCATTCCCAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGC
GAGGCTGTCCATGAGGCGGCCGCCTACGGCTGGAACGTGGACGAAAAGAT
CAAGCCAGACTGGCACAAGCTGGTGCAGTCCGTACAGAACCACATCAAGT
CCGTCAACTGGGTGACCCGTGTGGATCTGCGCGACAAGAAAGTGGAGTAC
ATCAATGGACTGGGCTCCTTCGTGGACTCGCACACACTGCTGGCCAAGCT
GAAGAGCGGCGAGCGCACAATCACCGCCCAGACCTTCGTCATTGCCGTTG
GCGGCCGACCACGTTATCCGGATATTCCCGGTGCTGTCGAGTATGGCATC
ACCAGCGATGATCTGTTCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGT
GGTGGGAGCTGGCTACATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTC
TCGGCTACGAGCCCACTGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTC
GACCAGCAGATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAGCGTGGCAT
TCCCTTCCTCCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCAGGATGATG
GCAAGCTGCTCGTGAAGTACAAGAACGTGGAGACCGGCGAGGAGGCCGAG
GATGTTTACGACACCGTTCTGTGGGCCATCGGCCGCAAGGGTCTGGTGGA
CGATCTGAACCTGCCCAATGCCGGCGTGACTGTGCAGAAGGACAAGATTC
CAGTGGACTCCCAGGAGGCTACCAATGTGGCAAACATCTACGCTGTCGGC
GATATCATCTATGGCAAGCCAGAGCTGACGCCCGTCGCCGTTTTGGCTGG
CCGTTTGCTGGCCCGCCGCCTGTACGGAGGATCTACCCAGCGCATGGACT
ACAAGGATGTGGCCACCACCGTTTTCACGCCCCTGGAGTACGCCTGCGTC
GGCCTGAGCGAGGAGGATGCCGTCAAGCAGTTCGGAGCCGATGAGATCGA
GGTGTTCCACGGCTACTACAAGCCCACGGAGTTCTTCATTCCCCAGAAGA
GCGTGCGCTACTGCTACTTGAAGGCTGTGGCCGAGCGCCATGGTGACCAG
CGCGTCTATGGACTGCACTATATTGGCCCGGTGGCCGGTGAGGTTATCCA
GGGATTCGCTGCCGCTTTGAAGTCTGGCCTGACTATTAACACGCTGATCA
ACACCGTGGGCATCCATCCCACTACCGCCGAAGAATTCACCCGGCTGGCC
ATCACCAAGCGCTCCGGACTGGACCCCACGCCGGCCAGCTGCTGCAGCTA
AAGCGGGAACGCAGCTCAGCCGCCTGGGACGTGTCGAAGCCGCTTGCTCC
ACCCGAAATCCCGTAGATGAATGGTTGTTGTCGCGGCCCAGCGATCGATG
AGTTCAATAGTTCCGTTTCGTTTCCACAATTAACACCCAACACAATAGCT
CTGCGCAAGGGAGGGGCACTGGGCAGCGATGGCGGGTGGAACGACACCAG
TGGAACTACCCGCGCGACCAGCCCAACCCACGACTGCTGCGCCGCCGACA
TGCACTCAAAATTTTGAATTTGTTTGAACCTATGAAATTAACTATGAAAT
CCCCTAAATGTACGGTTGAAGAATATAATTTTTCACCAACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD21729.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RA 2330 Trxr-1-RA 255..2197 1..1943 9715 100 Plus
Trxr-1.c 2248 Trxr-1.c 408..2211 140..1943 9020 100 Plus
Trxr-1-RB 2433 Trxr-1-RB 497..2300 140..1943 9020 100 Plus
Trxr-1.c 2248 Trxr-1.c 69..209 1..141 705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8138621..8139846 715..1940 6070 99.7 Plus
chrX 22417052 chrX 8137905..8138259 140..494 1700 98.6 Plus
chrX 22417052 chrX 8138323..8138549 488..714 1135 100 Plus
chr3L 24539361 chr3L 22539772..22540775 594..1597 955 73 Plus
chr3L 24539361 chr3L 22539318..22539672 146..500 715 81.3 Plus
chrX 22417052 chrX 8134404..8134545 1..142 710 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:09:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246808..8248036 715..1943 6145 100 Plus
X 23542271 X 8246092..8246446 140..494 1760 99.7 Plus
X 23542271 X 8246510..8246736 488..714 1135 100 Plus
3L 28110227 3L 22550864..22551867 594..1597 955 73 Plus
3L 28110227 3L 22550410..22550764 146..500 715 81.3 Plus
X 23542271 X 8242591..8242732 1..142 710 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8254906..8256134 715..1943 6145 100 Plus
X 23527363 X 8254190..8254544 140..494 1760 99.7 Plus
X 23527363 X 8254608..8254834 488..714 1135 100 Plus
X 23527363 X 8250689..8250830 1..142 710 100 Plus
3L 28103327 3L 22543964..22544229 594..859 490 78.9 Plus
3L 28103327 3L 22543626..22543755 265..394 455 90 Plus
3L 28103327 3L 22544779..22544967 1409..1597 330 78.3 Plus
3L 28103327 3L 22543768..22543864 404..500 320 88.6 Plus
3L 28103327 3L 22544666..22544754 1296..1384 310 89.8 Plus
Blast to na_te.dros performed on 2019-03-16 08:30:40 has no hits.

LD21729.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:31:20 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8138323..8138549 488..714 100 -> Plus
chrX 8134404..8134544 1..141 100 -> Plus
chrX 8137907..8138252 142..487 98 -> Plus
chrX 8138621..8139846 715..1940 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:11 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 1..1476 126..1601 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:41 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 1..1476 126..1601 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:55:34 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 1..1476 126..1601 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:17 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 1..1476 126..1601 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:42:53 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 1..1476 126..1601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:39 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 108..2047 1..1940 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:40 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 108..2047 1..1940 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:34 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 64..2003 1..1940 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:17 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 108..2047 1..1940 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:42:53 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 64..2003 1..1940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:20 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
X 8246094..8246439 142..487 100 -> Plus
X 8242591..8242731 1..141 100 -> Plus
X 8246510..8246736 488..714 100 -> Plus
X 8246808..8248033 715..1940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:20 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
X 8246094..8246439 142..487 100 -> Plus
X 8242591..8242731 1..141 100 -> Plus
X 8246510..8246736 488..714 100 -> Plus
X 8246808..8248033 715..1940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:20 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
X 8246094..8246439 142..487 100 -> Plus
X 8242591..8242731 1..141 100 -> Plus
X 8246510..8246736 488..714 100 -> Plus
X 8246808..8248033 715..1940 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:34 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8136624..8136764 1..141 100 -> Plus
arm_X 8140127..8140472 142..487 100 -> Plus
arm_X 8140543..8140769 488..714 100 -> Plus
arm_X 8140841..8142066 715..1940 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:00 Download gff for LD21729.complete
Subject Subject Range Query Range Percent Splice Strand
X 8254608..8254834 488..714 100 -> Plus
X 8254192..8254537 142..487 100 -> Plus
X 8254906..8256131 715..1940 100   Plus
X 8250689..8250829 1..141 100 -> Plus

LD21729.pep Sequence

Translation from 125 to 1600

> LD21729.pep
MAPVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTK
WGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLV
QSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTIT
AQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGL
ECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVP
LSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAG
VTVQKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLY
GGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKP
TEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKS
GLTINTLINTVGIHPTTAEEFTRLAITKRSGLDPTPASCCS*

LD21729.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19373-PA 537 GF19373-PA 52..537 6..491 2493 95.9 Plus
Dana\GF23459-PA 514 GF23459-PA 22..514 1..491 2045 76.3 Plus
Dana\GF24574-PA 504 GF24574-PA 35..489 7..471 397 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19308-PA 491 GG19308-PA 1..491 1..491 2555 97.8 Plus
Dere\GG16263-PA 518 GG16263-PA 31..518 8..491 2025 76.9 Plus
Dere\GG13635-PA 504 GG13635-PA 35..489 7..471 379 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12753-PA 596 GH12753-PA 110..596 4..491 2330 89.5 Plus
Dgri\GH16699-PA 514 GH16699-PA 26..514 4..491 1960 75.9 Plus
Dgri\GH17093-PA 504 GH17093-PA 35..489 7..471 388 30.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-PA 491 CG2151-PA 1..491 1..491 2556 100 Plus
Trxr-1-PB 596 CG2151-PB 106..596 1..491 2532 99.2 Plus
Trxr-1-PC 508 CG2151-PC 23..508 6..491 2531 100 Plus
Trxr-2-PA 516 CG11401-PA 24..516 1..491 1980 75.9 Plus
CG7430-PB 504 CG7430-PB 35..487 7..469 389 28.1 Plus
CG7430-PA 504 CG7430-PA 35..487 7..469 389 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15898-PA 601 GI15898-PA 114..601 3..491 2322 88.8 Plus
Dmoj\GI11388-PA 515 GI11388-PA 31..515 8..491 1948 76.3 Plus
Dmoj\GI11696-PA 504 GI11696-PA 35..489 7..471 390 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23230-PA 512 GL23230-PA 28..512 8..491 2021 77.2 Plus
Dper\GL22852-PA 504 GL22852-PA 35..489 7..471 382 29.2 Plus
Dper\GL14458-PA 65 GL14458-PA 1..64 1..65 174 58.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15270-PA 490 GA15270-PA 1..490 1..491 2414 92.1 Plus
Dpse\GA10979-PA 512 GA10979-PA 28..512 8..491 1995 77.2 Plus
Dpse\GA20345-PA 504 GA20345-PA 35..489 7..471 382 29.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22453-PA 516 GM22453-PA 31..516 8..491 2035 77.6 Plus
Dsec\GM11241-PA 268 GM11241-PA 1..197 1..197 1040 99 Plus
Dsec\GM25722-PA 504 GM25722-PA 35..489 7..471 375 28.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15034-PA 516 GD15034-PA 55..516 32..491 1905 76.5 Plus
Dsim\GD24769-PA 94 GD24769-PA 1..94 398..491 504 100 Plus
Dsim\GD14729-PA 504 GD14729-PA 35..489 7..471 373 28.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16646-PA 556 GJ16646-PA 67..556 1..491 2318 88.8 Plus
Dvir\GJ11643-PA 517 GJ11643-PA 33..517 8..491 1960 77.2 Plus
Dvir\GJ11371-PA 504 GJ11371-PA 35..489 7..471 383 29 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24920-PA 550 GK24920-PA 65..550 5..491 2364 90.3 Plus
Dwil\GK16764-PA 466 GK16764-PA 23..435 5..416 1667 75.1 Plus
Dwil\GK12667-PA 504 GK12667-PA 35..489 7..471 386 29.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15773-PA 491 GE15773-PA 1..491 1..491 2562 98 Plus
Dyak\GE23284-PA 516 GE23284-PA 31..516 8..491 2017 77 Plus
Dyak\GE19931-PA 504 GE19931-PA 35..489 7..471 381 28.4 Plus

LD21729.hyp Sequence

Translation from 125 to 1600

> LD21729.hyp
MAPVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTK
WGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLV
QSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTIT
AQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGL
ECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVP
LSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAG
VTVQKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLY
GGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKP
TEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKS
GLTINTLINTVGIHPTTAEEFTRLAITKRSGLDPTPASCCS*

LD21729.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-PA 491 CG2151-PA 1..491 1..491 2556 100 Plus
Trxr-1-PB 596 CG2151-PB 106..596 1..491 2532 99.2 Plus
Trxr-1-PC 508 CG2151-PC 23..508 6..491 2531 100 Plus
Trxr-2-PA 516 CG11401-PA 24..516 1..491 1980 75.9 Plus
CG7430-PB 504 CG7430-PB 35..487 7..469 389 28.1 Plus