Clone LD21733 Report

Search the DGRC for LD21733

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:33
Vector:pOT2
Associated Gene/TranscriptCG8379-RA
Protein status:LD21733.pep: gold
Preliminary Size:2200
Sequenced Size:2444

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8379 2001-01-01 Release 2 assignment
CG8379 2001-11-12 Blastp of sequenced clone
CG8379 2003-01-01 Sim4 clustering to Release 3
CG8379 2008-04-29 Release 5.5 accounting
CG8379 2008-08-15 Release 5.9 accounting
CG8379 2008-12-18 5.12 accounting

Clone Sequence Records

LD21733.complete Sequence

2444 bp (2444 high quality bases) assembled on 2001-11-12

GenBank Submission: AY069483

> LD21733.complete
CCCCAATCACAAAGTTTACTATTGCCCATCCACAAATTCTGCCAACTTCC
GATATATTTTTACAGCAGCAGACTATGAGTTTCTGAAACTAGTCCCCTAG
GTCAATAATATCCACATCCAGTCATGACCTCTCGCAAGCGCAGTGGCAGC
GGCTCCACCAAGCGGCCCAAGGAGAAGGTGGTCTATATATATGAGCTGTT
GTGCCGGGGCGAGGATCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGT
TCTTCCTGCTGCAGCCGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAA
CTCAACAACGAGCAGCTGCAGCTGGTGAAACCGAACCTGAACACCCTCTT
CCAGAGGTGCATCGAAATGCTTGACACGGATCATCCTAAGCGGCTGTGCA
ACAGCCTACACACGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCC
AACGCAGAACCAACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAA
GATGGACGAATGGCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCC
TGGGCGATGTGCCCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAG
GTTCTGGTTACGGGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCA
TCTAATGATGCACAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATC
CTACGTTCCGTAGCCAGCATGGACACGACATCGTTATCCTACTTACTATC
CTGGTCAACTATCGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCT
CTCCATACTCGCTGATGAGCTGGCTTTAAATGGCTATGGCCAAATGATAT
CGCAATCGCTAATTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAAT
GTGCAATCCTCTTCCTGGTTTTCGTCGCTGTCGAATATTGTGGGCAACAT
GTTTGTGTCGGATGAAGGATGCGAACGGGTGCAGCAGATCAAGGCGAATA
ATGGCCTTCTACTTGCCCTCTACGAGGCAGTGCACCTGAATCGGAACTTC
ATCACAACTCTGGCTCACACGCAGGCAGAGTCCAGTGCCCCGCCCTCGCC
CAGTAACACATTGAGTCTGGCCCAACCTGTGCCGGATCTATCTAATGCAC
CCATCATTGACATTACGCAGTATCCCACCAATCTGCTGGTGGCCGTATTT
CAGTACTGTTCCATCGTGATGCAGGACAATAAGAACGAATCGAGCATTGC
TAATCTGAAGCTGTGTTTCCTCATCCTCACCTGCATTTCCGAGGACCAGT
ACGCCAACTCCATGATGCACGACAGCAATCTTACCTTCAAAGTCATGCTG
CATCGGGCGCAGATGCGTCATCGCAAGCTGAATGTGGATCGGGTGGGCAA
GTCCCAGCCTTTGGCTGCCACTCTACTGGACCTCCTGGTGGAGTTCATTG
TATCGCATTTGATGAAAAAGTTCCCGATGGAGCTGTATCTGCTCTGCATT
GGAGTTATCCATCGAATCTTGTGCTATCAAAAGAGATGTAGAGTGCGGCT
CAATTATCCGTGGAAGGAACTTTGGTCGGCTCTCATTGGTCTTCTGCGGT
TCTTGGTCAACCAAGAACAGACGCTGGTTAAAAAGTGCAACATTTTTCAT
CTGTCGCTACAGGTGGTGAATATATTTAATCTGTTTATTACGTACGGTGA
TACTTTCCTGGCCACAACAAATAGCTATGATGAGCTCTACTACGAACTGA
ACCGCGAGGAGAAGGTATTTACGGAAATACATGCCATGGTTCTTCGCTAT
ACAACGATGCCGGACTGCGAATACAAAGACGATGTAATCAAGCTCTTAAA
CGCTTTGGTAAATATCCTGGCCATTGTTAAGCACTTTCAGAACAAGATCA
AGGAATGGCTGGCCGAACAAGGCCTCTCTACGCCCACGGAGGAGCAGATA
CTCGACGTGGTGCGCAAGAACTACGACCTAACGCTCAAACTGCAGGACTC
CCTGGACCAATACGAACGTTACACAGAAACGCCGCTGCACACCAACTTCT
TTAAGTTGATGGTTCGCGATGTTGTCAACGATACGCGCAAGCACATCTAC
GGCTATGTGAAGGAGGCAGTATCTGTTATTCCGGACCAGGAAATTCTCCT
CAGTTCCTCTATGACATCCGTTTCGGCCGGTACAGCCACTCCGGCTTCAG
CAACAGCAGTGCCAGAAGCAAAAGCGTTGCCTTCTTTTGCTTAGTTTTGT
AATTATATTTTAAATATTCAAATCTCTGGATGCGTAAACTCGATGTAATC
TATAAGATTTAAAGTGCTTTGCGAGACTTTTATAGCTAAAACAGTGCACT
TAAAGCAAAAACATATTCTGTGCAAGTTTTTTACACAAGTATACAAAATA
TATAAATATTACGTGTATATAAAATCAAAAAAAAAAAAAAAAAA

LD21733.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-RA 2612 CG8379-RA 114..2542 1..2429 12145 100 Plus
CG8379-RB 2615 CG8379-RB 114..2545 1..2429 12090 99.8 Plus
CG8379.a 2430 CG8379.a 67..2430 63..2426 11820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4651591..4652547 833..1789 4785 100 Plus
chr3R 27901430 chr3R 4652601..4653238 1789..2426 3190 100 Plus
chr3R 27901430 chr3R 4650913..4651367 379..833 2275 100 Plus
chr3R 27901430 chr3R 4650645..4650848 176..379 1020 100 Plus
chr3R 27901430 chr3R 4650391..4650569 1..179 895 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8825632..8826588 833..1789 4785 100 Plus
3R 32079331 3R 8826642..8827282 1789..2429 3205 100 Plus
3R 32079331 3R 8824954..8825408 379..833 2275 100 Plus
3R 32079331 3R 8824686..8824889 176..379 1020 100 Plus
3R 32079331 3R 8824432..8824610 1..179 895 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8566463..8567419 833..1789 4785 100 Plus
3R 31820162 3R 8567473..8568113 1789..2429 3205 100 Plus
3R 31820162 3R 8565785..8566239 379..833 2275 100 Plus
3R 31820162 3R 8565517..8565720 176..379 1020 100 Plus
3R 31820162 3R 8565263..8565441 1..179 895 100 Plus
Blast to na_te.dros performed 2019-03-16 16:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 602..701 2326..2424 119 59 Plus

LD21733.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:32:22 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4650391..4650567 1..177 100 -> Plus
chr3R 4650647..4650848 178..379 100 -> Plus
chr3R 4650914..4651367 380..833 100 -> Plus
chr3R 4651592..4652547 834..1789 100 -> Plus
chr3R 4652602..4653238 1790..2426 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:12 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 1..2121 124..2244 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:42 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 1..2121 124..2244 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:49 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 1..2121 124..2244 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:20 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 1..2121 124..2244 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:31:50 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 1..2121 124..2244 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:04:36 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 23..2448 1..2426 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:41 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 23..2448 1..2426 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:49 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 22..2447 1..2426 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:20 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 23..2448 1..2426 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:31:50 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 22..2447 1..2426 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:22 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8824432..8824608 1..177 100 -> Plus
3R 8824688..8824889 178..379 100 -> Plus
3R 8824955..8825408 380..833 100 -> Plus
3R 8825633..8826588 834..1789 100 -> Plus
3R 8826643..8827279 1790..2426 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:22 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8824432..8824608 1..177 100 -> Plus
3R 8824688..8824889 178..379 100 -> Plus
3R 8824955..8825408 380..833 100 -> Plus
3R 8825633..8826588 834..1789 100 -> Plus
3R 8826643..8827279 1790..2426 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:22 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8824432..8824608 1..177 100 -> Plus
3R 8824688..8824889 178..379 100 -> Plus
3R 8824955..8825408 380..833 100 -> Plus
3R 8825633..8826588 834..1789 100 -> Plus
3R 8826643..8827279 1790..2426 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:49 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4650154..4650330 1..177 100 -> Plus
arm_3R 4650410..4650611 178..379 100 -> Plus
arm_3R 4650677..4651130 380..833 100 -> Plus
arm_3R 4651355..4652310 834..1789 100 -> Plus
arm_3R 4652365..4653001 1790..2426 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:19 Download gff for LD21733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8565786..8566239 380..833 100 -> Plus
3R 8566464..8567419 834..1789 100 -> Plus
3R 8567474..8568110 1790..2426 100   Plus
3R 8565263..8565439 1..177 100 -> Plus
3R 8565519..8565720 178..379 100 -> Plus

LD21733.pep Sequence

Translation from 123 to 2243

> LD21733.pep
MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNF
EALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTDHPKRLCNSLHTLCS
LFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPENA
RFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQHG
HDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDFC
RQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLALY
EAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQY
PTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMHD
SNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKKF
PMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQT
LVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVFT
EIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQG
LSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRDV
VNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEAK
ALPSFA*

LD21733.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17691-PA 704 GF17691-PA 12..676 12..676 3459 97.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13434-PA 707 GG13434-PA 1..707 1..706 3757 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23943-PA 705 GH23943-PA 1..678 1..676 3335 92.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-PA 706 CG8379-PA 1..706 1..706 3655 100 Plus
CG8379-PB 707 CG8379-PB 1..707 1..706 3643 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10054-PA 693 GI10054-PA 1..678 1..676 3358 93.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21552-PA 719 GL21552-PA 1..684 1..683 3444 95 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21032-PA 719 GA21032-PA 1..681 1..682 3445 95.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23769-PA 707 GM23769-PA 1..707 1..706 3761 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18579-PA 706 GD18579-PA 1..706 1..706 3515 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23789-PA 693 GJ23789-PA 1..693 1..694 3356 91 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11970-PA 720 GK11970-PA 1..690 1..691 3415 92.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25913-PA 707 GE25913-PA 1..707 1..706 3762 99 Plus

LD21733.hyp Sequence

Translation from 123 to 2243

> LD21733.hyp
MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNF
EALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTDHPKRLCNSLHTLCS
LFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPENA
RFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQHG
HDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDFC
RQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLALY
EAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQY
PTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMHD
SNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKKF
PMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQT
LVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVFT
EIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQG
LSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRDV
VNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEAK
ALPSFA*

LD21733.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-PA 706 CG8379-PA 1..706 1..706 3655 100 Plus
CG8379-PB 707 CG8379-PB 1..707 1..706 3643 99.9 Plus