Clone LD21768 Report

Search the DGRC for LD21768

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:68
Vector:pOT2
Associated Gene/TranscriptMppe-RA
Protein status:LD21768.pep: gold
Preliminary Size:2200
Sequenced Size:1743

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8889 2001-01-01 Release 2 assignment
CG8889 2002-06-10 Blastp of sequenced clone
CG8889 2003-01-01 Sim4 clustering to Release 3
CG8889 2008-04-29 Release 5.5 accounting
CG8889 2008-08-15 Release 5.9 accounting
CG8889 2008-12-18 5.12 accounting

Clone Sequence Records

LD21768.complete Sequence

1743 bp (1743 high quality bases) assembled on 2002-06-10

GenBank Submission: AY069486

> LD21768.complete
CGCAAGAAGTGCAAACATAGGATAAAGATAATTGCACAATTATTGGCACC
TGGAGCCGGCAAACGCTGTAACGGAATTGCCCGCGTTCAAAAGCCAATGG
CGCGCATTGGCGAAACATCGGAGGAATGTGGTAATGGACGCAACACAACG
TTCCGGCCGTTCTAGATGTTTTGCTTTCTAATCCAATTAAGCGTGTGCGC
CCTGAAAGCGATGATGCGGGCCGGTTGTGGTCAGATGTGCGCCGTCCGTT
GCAGCAGCTCTACATTCCCGAAAATATGAGCATTCTTACGTAAATATTGC
ATGGGCAGTGCGTATTTAAATATAGATTGTACATATAGAGACGCAATGTA
AGCCAGTTGCATTTGCCAGAGGACAACCGAAAGTATTAATCAAGCAATCC
AAACCGATGCGGCATAGCCGGGATTATGGCTTCCTTGCGCGTCGTCAATA
GATTAGTGTGCCGCGGTTTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTC
AACGAGTTTATAGTTTACTACATGGCCCAGTCCAGTTGGCAGCCAATCGA
TTGCAAACTAGATAATTGCACGCGCCTGCTGCTTATTGCTGATCCCCAGA
TACTGGGAAACTCCTACGATCGATCTTCGCACAGTCCTTTAGCCAGGTAC
GATTCGGATAGATACCTGGCGAAGACTTTCGAGCGAGCTCTTGCCTTTAC
ACAGCCTCACATCATAGTGTTCCTGGGCGATCTGTTGGACGAAGGCAACA
TTGCCACGGCTCAAGAGTACAAGCAGTACGTTCAGCGGTTCAGACGAATT
TATCAGAATAAGAACTACAAAAAACGCGTCCATGTGCCGGGTGACAATGA
TATTGGCGGCGAGAATGGCGACTACATATCCAACTCGAACCAAAGACGCT
TTGAGAACGAATTCATGAGTGAAGACCTCTTTGACTATGACAATCGATTA
CGCTTCTTCAAGATAAACCGCATGCTATTGGACTTTAGCAACCCGGATAG
GGATAACAATGCGGATCGTCTAAGAATTGGCGTATCCCATGCCCCGCTGC
TCATTGGCGGAGGACCCCTGTTGAGAGCCATCATCAGCGACTTGGATCCA
CATATCATTTTCTCAGGACACTGGCATGAATCCAGAATATTTATTTACCC
CTCCACCAAGGTGATCAACTTTTATGAAAACTCCGTGAGGCATTTTGACT
TGAAGGCCCTCAAAGAGCAGGAGCACAGCTATCTGGAGATAATGGTGCCC
ACTTGCTCGTATCGCATGGGAAAGTCCAAGATCGGATTGGGCTACGCGGT
TTTGGAAAACTACAATCTGAGCTACACGGTGCTGTGGCAGCCAAATCGAT
TTATCCTGCTCTTCACCTATGTTTTTTGGGGACTATTCGTCGTCTGTGGT
TTCGTCGTCTTTAAGATGATGACACGTTGTCCCTTCCGCGTGGCCAAAAG
GCAGACGCTCTATAACCGCGTCTCGACTATACCGCAATTTTAGACTGCAC
TTTCCACTCGTCATGGACAATAAGCCCAAGATTCTCAAGAATTGCTCGAA
TATACAACTCAAAATTGAATTAAAATCGTATTTATAGACAAGTAGCTTAT
ATTCGGATAAAGTTGAGTAGTAGCAATGAAAATTGATATAAAGTGCTAAA
TTTGTTTTCCAATAAGTGAAAAAATGTAACCAATGTCCTCCATCCATATT
CATTAAAAAATTTAATTTAATTTAAAAAAAAAAAAAAAAAAAA

LD21768.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8889-RA 2082 CG8889-RA 268..1992 1..1725 8625 100 Plus
CG8889-RB 1990 CG8889-RB 650..1925 450..1725 6380 100 Plus
CG8889.a 850 CG8889.a 16..661 1..646 3230 100 Plus
CG8889-RB 1990 CG8889-RB 195..646 1..452 2260 100 Plus
CG8889.a 850 CG8889.a 651..781 694..824 625 98.4 Plus
CG8889.a 850 CG8889.a 809..850 825..866 210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7913314..7913794 1305..825 2375 99.6 Minus
chr2R 21145070 chr2R 7914445..7914895 451..1 2255 100 Minus
chr2R 21145070 chr2R 7912837..7913254 1723..1305 2000 99 Minus
chr2R 21145070 chr2R 7913945..7914210 824..559 1330 100 Minus
chr2R 21145070 chr2R 7914260..7914375 565..450 565 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12026092..12026572 1305..825 2405 100 Minus
2R 25286936 2R 12027223..12027673 451..1 2255 100 Minus
2R 25286936 2R 12025612..12026032 1725..1305 2105 100 Minus
2R 25286936 2R 12026723..12026988 824..559 1330 100 Minus
2R 25286936 2R 12027038..12027153 565..450 565 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12027291..12027771 1305..825 2405 100 Minus
2R 25260384 2R 12028422..12028872 451..1 2255 100 Minus
2R 25260384 2R 12026811..12027231 1725..1305 2105 100 Minus
2R 25260384 2R 12027922..12028187 824..559 1330 100 Minus
2R 25260384 2R 12028237..12028352 565..450 565 99.1 Minus
Blast to na_te.dros performed on 2019-03-16 21:48:38 has no hits.

LD21768.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:49:17 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7912857..7913253 1306..1702 99 <- Minus
chr2R 7913314..7913794 825..1305 99 <- Minus
chr2R 7913945..7914207 562..824 100 <- Minus
chr2R 7914264..7914373 452..561 100 <- Minus
chr2R 7914445..7914895 1..451 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:18 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
CG8889-RA 1..1068 426..1493 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:13 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
CG8889-RA 1..1068 426..1493 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:05:35 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 1..1068 426..1493 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:45 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
CG8889-RA 1..1068 426..1493 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:19 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 1..1068 426..1493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:52:59 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
CG8889-RA 16..1738 1..1723 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:13 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
CG8889-RA 16..1738 1..1723 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:35 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 35..1757 1..1723 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:45 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
CG8889-RA 16..1738 1..1723 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:19 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 35..1757 1..1723 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:49:17 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12025614..12026031 1306..1723 100 <- Minus
2R 12026092..12026572 825..1305 100 <- Minus
2R 12026723..12026985 562..824 100 <- Minus
2R 12027042..12027151 452..561 100 <- Minus
2R 12027223..12027673 1..451 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:49:17 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12025614..12026031 1306..1723 100 <- Minus
2R 12026092..12026572 825..1305 100 <- Minus
2R 12026723..12026985 562..824 100 <- Minus
2R 12027042..12027151 452..561 100 <- Minus
2R 12027223..12027673 1..451 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:49:17 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12025614..12026031 1306..1723 100 <- Minus
2R 12026092..12026572 825..1305 100 <- Minus
2R 12026723..12026985 562..824 100 <- Minus
2R 12027042..12027151 452..561 100 <- Minus
2R 12027223..12027673 1..451 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:05:35 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7913119..7913536 1306..1723 100 <- Minus
arm_2R 7913597..7914077 825..1305 100 <- Minus
arm_2R 7914228..7914490 562..824 100 <- Minus
arm_2R 7914547..7914656 452..561 100 <- Minus
arm_2R 7914728..7915178 1..451 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:48:55 Download gff for LD21768.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12028241..12028350 452..561 100 <- Minus
2R 12027922..12028184 562..824 100 <- Minus
2R 12026813..12027230 1306..1723 100 <- Minus
2R 12027291..12027771 825..1305 100 <- Minus
2R 12028422..12028872 1..451 100   Minus

LD21768.pep Sequence

Translation from 425 to 1492

> LD21768.pep
MASLRVVNRLVCRGFVALTLLLVFFNEFIVYYMAQSSWQPIDCKLDNCTR
LLLIADPQILGNSYDRSSHSPLARYDSDRYLAKTFERALAFTQPHIIVFL
GDLLDEGNIATAQEYKQYVQRFRRIYQNKNYKKRVHVPGDNDIGGENGDY
ISNSNQRRFENEFMSEDLFDYDNRLRFFKINRMLLDFSNPDRDNNADRLR
IGVSHAPLLIGGGPLLRAIISDLDPHIIFSGHWHESRIFIYPSTKVINFY
ENSVRHFDLKALKEQEHSYLEIMVPTCSYRMGKSKIGLGYAVLENYNLSY
TVLWQPNRFILLFTYVFWGLFVVCGFVVFKMMTRCPFRVAKRQTLYNRVS
TIPQF*

LD21768.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12647-PA 355 GF12647-PA 1..355 1..355 1799 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22612-PA 357 GG22612-PA 1..357 1..355 1886 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21045-PA 355 GH21045-PA 1..355 1..355 1747 89.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Mppe-PA 355 CG8889-PA 1..355 1..355 1882 100 Plus
Mppe-PB 357 CG8889-PB 1..357 1..355 1869 99.4 Plus
Mppe-PD 364 CG8889-PD 1..364 1..355 1862 97.5 Plus
Mppe-PE 366 CG8889-PE 1..366 1..355 1849 97 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18647-PA 355 GI18647-PA 1..351 1..351 1551 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11542-PA 355 GL11542-PA 1..355 1..355 1783 91.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21393-PA 355 GA21393-PA 1..355 1..355 1791 91.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20391-PA 357 GM20391-PA 1..357 1..355 1891 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25866-PA 355 GD25866-PA 1..355 1..355 1903 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21663-PA 355 GJ21663-PA 1..355 1..355 1721 87.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21981-PA 356 GK21981-PA 1..356 1..355 1739 88.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13480-PA 357 GE13480-PA 1..357 1..355 1886 98.9 Plus

LD21768.hyp Sequence

Translation from 425 to 1492

> LD21768.hyp
MASLRVVNRLVCRGFVALTLLLVFFNEFIVYYMAQSSWQPIDCKLDNCTR
LLLIADPQILGNSYDRSSHSPLARYDSDRYLAKTFERALAFTQPHIIVFL
GDLLDEGNIATAQEYKQYVQRFRRIYQNKNYKKRVHVPGDNDIGGENGDY
ISNSNQRRFENEFMSEDLFDYDNRLRFFKINRMLLDFSNPDRDNNADRLR
IGVSHAPLLIGGGPLLRAIISDLDPHIIFSGHWHESRIFIYPSTKVINFY
ENSVRHFDLKALKEQEHSYLEIMVPTCSYRMGKSKIGLGYAVLENYNLSY
TVLWQPNRFILLFTYVFWGLFVVCGFVVFKMMTRCPFRVAKRQTLYNRVS
TIPQF*

LD21768.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mppe-PA 355 CG8889-PA 1..355 1..355 1882 100 Plus
Mppe-PB 357 CG8889-PB 1..357 1..355 1869 99.4 Plus
Mppe-PD 364 CG8889-PD 1..364 1..355 1862 97.5 Plus
Mppe-PE 366 CG8889-PE 1..366 1..355 1849 97 Plus