Clone LD21785 Report

Search the DGRC for LD21785

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:217
Well:85
Vector:pOT2
Associated Gene/Transcriptbmm-RA
Protein status:LD21785.pep: gold
Preliminary Size:2200
Sequenced Size:2402

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5295 2001-01-01 Release 2 assignment
CG5295 2001-07-04 Blastp of sequenced clone
CG5295 2003-01-01 Sim4 clustering to Release 3
bmm 2008-04-29 Release 5.5 accounting
bmm 2008-08-15 Release 5.9 accounting
bmm 2008-12-18 5.12 accounting

Clone Sequence Records

LD21785.complete Sequence

2402 bp (2402 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051668

> LD21785.complete
CCATCCGCAGAGCGAGTAAATAACGGTTCGCGAGCAACAACTTTTCATTT
CGAGAGCGGAGTAATTTTTCCAGCCGACCGACAAACAGTGATTGAAAACC
CAAACGAGATTTATTTCGAAACGCGACAAGAAATTGTTACATCAAAGGAG
CTGCAACGACTAAAATCCGCGAAGAAAGTGCGAGAAAATACCTTAAAGAG
AGAAAAAACCAGTGACGCAGTAGCAACAACAACAAACAGTCATCGAACGA
TTTATAGAATCTAACGCCGAGTCCAAAGCATGAATCTATCATTCGCTGGC
TGCGGATTCCTGGGCATCTACCACGTCGGAGTGGCCGTCTGCTTCAAGAA
GTATGCACCGCATCTGTTGCTGGAGAAGATCGGAGGCGCTTCGGCCGGTT
CCCTGGCCGCCTGCTGTCTCCTCTGCGATTTGCCATTGGGCAGCATGACT
TCGGACTTCTTCAGGGTGGTGAACGAAGCTCGTCGCTACTCCCTGGGTCC
CTTCAGTCCCTCCTTCAACATCCAGACCTGTCTGCTGGAGGGTCTACAGA
AGCATCTACCAGACGATGCTCACAAGCGGGTGAATGGACGACTGCACATT
TCGCTTACCCGCGTGTACGATGGCAAGAACGTGATCATCTCGGAGTTTGA
GTCACGGGAAGAGGTCCTGCAGGCGCTGTTGTGTGCGTGCTTCATACCCG
GATTCTCCGGCATCTTGCCGCCCAGATTCCGTGGCGTTCGCTACATGGAT
GGTGCCTTCTCGGACAATCTGCCCATTCTGGACGAGAACACCATTACGGT
CAGTCCGTTCTGCGGCGAGAGTGATATTTGCCCGAGGGATCAGAGCTCGC
AGCTCTTCCATCTGAATTGGGCCAACACCAGCATCGAGATCTCCAGACAG
AACATCAATCGCTTCGTGCGCATCCTTTTTCCGCCGCGTCCCGAGTTTCT
GTCCAAGTTCTGCCAGCAGGGATTCGATGATGCCCTGCAATTCCTGCATC
GCAACAATCTGATCAACTGTCGACGCTGCGTGGCGGTTCAGTCGACATTC
GTGGTTTCCGAAACGGTGGCCCAGCCCCAGGAGTTCGATCCCGAGTGCAG
GGAGTGCAAGAAGCACAGAAAGGACGCTTTGAGCTCAAACATGCCCCAAA
CGGTACTGGATGTCATTCAGGACTATATCGAACAAGCCAATAAGGGTCTG
GCCAACTGGATTTTCAAGCATCGCGGCATTAAGCTGCTTTCCCTACCAGC
CACAGTGCCCATGGACTTTCTGCTGGCCACCATTTCAAAAATATCAGCAC
TGACGCCCAAACTTACCAAGCAGGCCAGAGTAATGGTGGAGGACTTAATT
TTGCAGTTGAACCACGCCATGCGGATACGACTGCTAAATAAATTCACGCT
CTATGACCAGCCTCACTTCGATGCCACAGGACTTCTTCATTCCAGCCGCT
TATATGGACCCCGTGTTTCAATCCTTGTGGATGAATGTGGAGCCACACCG
CTAGAGGACGATGTCGACAACTTTGAGCATGTCCTCAAGATGACCACGCA
CAACGACGCTCTATATGCCTATTACTATACTGACAGCAACACGAACAAGG
TGAAAGTAACCGAGATCTTTGACTTTGACGAAATAACGGAGCACGACAAG
CTGGCCACCGATCTGCAGATCTACGAAGGCTCTGTCGAAGATCACCCCAA
TCCCCACCAGCACAGCCACAATACGGTGGTCAGCGAATGGAATGGCGTCG
AATCAGTACAAGTAATGCCCACGACTCCTGAACTACACGACGTAGCCTTT
TAAAGCACTTACAAACTAAACGACTATAAATGCACCTCCATAACCCTTCA
CCCACTCAAGCATTAAGTCCAAATTTTAAATCGTTGGCGCAGACTTCTTC
ATCGATGCGCATACACCAAATGTGGAGGATAGTAAAACATCAGCGCCACA
ATTCTCCCGCCTGGACCTGGAGACCGAGTCGGATGCTAGTGTGCTAAGTG
ATCCCGAGGTTGATCAGACTTTTAGCTCCACGGCCTCCACGCACAGCAGC
GACATGTATATAGAAATTGAGGGGTAATTAGTAATGGGGAGGGGGCAATC
CTCTTAGGAACTGTATCGAAACATCTCCAAAGCGGCTCGTAGCAAAGCGA
AAAGCCTAGTAGCGTTTCCATTAGTCTAAATTAGTCTTAGTACGACCAAC
GTATGTACCTAACTTAACTTAGCCGTATGCTGCCATTGTATCATCGTCAG
TTTGTAAGCGGCAATTAGCTAATAATTGCATTCTTGTTATTAGTCACCCT
CACACGACTTGTATTACATCCAAATCCCCATCTGTGTTTAGCCTAAGTTG
ATAATGTATAAACAATAAAAAAAATAAACAACAAAAAAAAAAAAAAAAAA
AA

LD21785.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
bmm-RA 2508 bmm-RA 111..2495 1..2385 11925 100 Plus
bmm.a 2560 bmm.a 67..1822 1..1756 8780 100 Plus
bmm-RB 2382 bmm-RB 111..1866 1..1756 8780 100 Plus
bmm.a 2560 bmm.a 1917..2548 1754..2385 3160 100 Plus
bmm-RB 2382 bmm-RB 1864..2359 1890..2385 2480 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14768491..14769175 1123..439 3365 99.4 Minus
chr3L 24539361 chr3L 14766648..14767140 2382..1890 2435 99.6 Minus
chr3L 24539361 chr3L 14776054..14776493 440..1 2200 100 Minus
chr3L 24539361 chr3L 14767491..14767760 1756..1487 1335 99.6 Minus
chr3L 24539361 chr3L 14768263..14768431 1289..1121 830 99.4 Minus
chr3L 24539361 chr3L 14767258..14767396 1892..1754 695 100 Minus
chr3L 24539361 chr3L 14768085..14768193 1398..1290 545 100 Minus
chr3L 24539361 chr3L 14767830..14767919 1487..1398 450 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14778339..14779023 1123..439 3425 100 Minus
3L 28110227 3L 14776493..14776988 2385..1890 2480 100 Minus
3L 28110227 3L 14785918..14786357 440..1 2200 100 Minus
3L 28110227 3L 14777339..14777608 1756..1487 1350 100 Minus
3L 28110227 3L 14778111..14778279 1289..1121 845 100 Minus
3L 28110227 3L 14777106..14777244 1892..1754 695 100 Minus
3L 28110227 3L 14777933..14778041 1398..1290 545 100 Minus
3L 28110227 3L 14777678..14777767 1487..1398 450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14771439..14772123 1123..439 3425 100 Minus
3L 28103327 3L 14769593..14770088 2385..1890 2480 100 Minus
3L 28103327 3L 14779018..14779457 440..1 2200 100 Minus
3L 28103327 3L 14770439..14770708 1756..1487 1350 100 Minus
3L 28103327 3L 14771211..14771379 1289..1121 845 100 Minus
3L 28103327 3L 14770206..14770344 1892..1754 695 100 Minus
3L 28103327 3L 14771033..14771141 1398..1290 545 100 Minus
3L 28103327 3L 14770778..14770867 1487..1398 450 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:52:48 has no hits.

LD21785.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:54:30 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14766671..14767137 1893..2359 99 <- Minus
chr3L 14767258..14767393 1757..1892 100 <- Minus
chr3L 14767491..14767759 1488..1756 99 <- Minus
chr3L 14767830..14767918 1399..1487 100 <- Minus
chr3L 14768085..14768193 1290..1398 100 <- Minus
chr3L 14768263..14768429 1123..1289 99 <- Minus
chr3L 14768492..14769174 440..1122 99 <- Minus
chr3L 14776055..14776493 1..439 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:22 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 1..1524 280..1803 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:33 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 1..1524 280..1803 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:44:49 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 1..1524 280..1803 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:12 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 1..1524 280..1803 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:19:55 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 1..1524 280..1803 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:53 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 67..2425 1..2359 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:33 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 67..2425 1..2359 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:49 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 56..2414 1..2359 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:13 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 67..2425 1..2359 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:19:55 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 56..2414 1..2359 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:30 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14776519..14776985 1893..2359 100 <- Minus
3L 14777106..14777241 1757..1892 100 <- Minus
3L 14777339..14777607 1488..1756 100 <- Minus
3L 14777678..14777766 1399..1487 100 <- Minus
3L 14777933..14778041 1290..1398 100 <- Minus
3L 14778111..14778277 1123..1289 100 <- Minus
3L 14778340..14779022 440..1122 100 <- Minus
3L 14785919..14786357 1..439 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:30 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14776519..14776985 1893..2359 100 <- Minus
3L 14777106..14777241 1757..1892 100 <- Minus
3L 14777339..14777607 1488..1756 100 <- Minus
3L 14777678..14777766 1399..1487 100 <- Minus
3L 14777933..14778041 1290..1398 100 <- Minus
3L 14778111..14778277 1123..1289 100 <- Minus
3L 14778340..14779022 440..1122 100 <- Minus
3L 14785919..14786357 1..439 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:30 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14776519..14776985 1893..2359 100 <- Minus
3L 14777106..14777241 1757..1892 100 <- Minus
3L 14777339..14777607 1488..1756 100 <- Minus
3L 14777678..14777766 1399..1487 100 <- Minus
3L 14777933..14778041 1290..1398 100 <- Minus
3L 14778111..14778277 1123..1289 100 <- Minus
3L 14778340..14779022 440..1122 100 <- Minus
3L 14785919..14786357 1..439 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:49 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14771033..14771141 1290..1398 100 <- Minus
arm_3L 14771211..14771377 1123..1289 100 <- Minus
arm_3L 14769619..14770085 1893..2359 100 <- Minus
arm_3L 14770206..14770341 1757..1892 100 <- Minus
arm_3L 14770439..14770707 1488..1756 100 <- Minus
arm_3L 14770778..14770866 1399..1487 100 <- Minus
arm_3L 14771440..14772122 440..1122 100 <- Minus
arm_3L 14779019..14779457 1..439 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:57 Download gff for LD21785.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14779019..14779457 1..439 100   Minus
3L 14769619..14770085 1893..2359 100 <- Minus
3L 14770206..14770341 1757..1892 100 <- Minus
3L 14770439..14770707 1488..1756 100 <- Minus
3L 14770778..14770866 1399..1487 100 <- Minus
3L 14771033..14771141 1290..1398 100 <- Minus
3L 14771211..14771377 1123..1289 100 <- Minus
3L 14771440..14772122 440..1122 100 <- Minus

LD21785.pep Sequence

Translation from 279 to 1802

> LD21785.pep
MNLSFAGCGFLGIYHVGVAVCFKKYAPHLLLEKIGGASAGSLAACCLLCD
LPLGSMTSDFFRVVNEARRYSLGPFSPSFNIQTCLLEGLQKHLPDDAHKR
VNGRLHISLTRVYDGKNVIISEFESREEVLQALLCACFIPGFSGILPPRF
RGVRYMDGAFSDNLPILDENTITVSPFCGESDICPRDQSSQLFHLNWANT
SIEISRQNINRFVRILFPPRPEFLSKFCQQGFDDALQFLHRNNLINCRRC
VAVQSTFVVSETVAQPQEFDPECRECKKHRKDALSSNMPQTVLDVIQDYI
EQANKGLANWIFKHRGIKLLSLPATVPMDFLLATISKISALTPKLTKQAR
VMVEDLILQLNHAMRIRLLNKFTLYDQPHFDATGLLHSSRLYGPRVSILV
DECGATPLEDDVDNFEHVLKMTTHNDALYAYYYTDSNTNKVKVTEIFDFD
EITEHDKLATDLQIYEGSVEDHPNPHQHSHNTVVSEWNGVESVQVMPTTP
ELHDVAF*

LD21785.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25180-PA 507 GF25180-PA 1..507 1..507 2674 96.8 Plus
Dana\GF21217-PA 434 GF21217-PA 6..274 2..268 940 66.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13706-PA 507 GG13706-PA 1..507 1..507 2723 99.6 Plus
Dere\GG17860-PA 448 GG17860-PA 8..254 2..246 888 66.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11087-PA 504 GH11087-PA 1..504 1..507 2481 90.2 Plus
Dgri\GH17183-PA 499 GH17183-PA 1..499 1..507 2318 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
bmm-PA 507 CG5295-PA 1..507 1..507 2686 100 Plus
bmm-PB 553 CG5295-PB 1..492 1..492 2607 100 Plus
dob-PA 480 CG5560-PA 8..293 2..288 937 61.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17604-PA 504 GI17604-PA 1..504 1..507 2473 90 Plus
Dmoj\GI13942-PA 482 GI13942-PA 1..482 1..490 2112 81.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26073-PA 282 GL26073-PA 1..282 56..337 1513 99.6 Plus
Dper\GL15174-PA 415 GL15174-PA 1..342 1..386 1038 58.3 Plus
Dper\GL26084-PA 163 GL26084-PA 1..163 345..507 827 93.3 Plus
Dper\GL19691-PA 89 GL19691-PA 5..80 1..74 236 72.4 Plus
Dper\GL15291-PA 89 GL15291-PA 5..81 1..75 224 70.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18792-PA 507 GA18792-PA 1..507 1..507 2672 97.2 Plus
Dpse\GA18971-PA 419 GA18971-PA 5..346 1..386 1037 58.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24528-PA 507 GM24528-PA 1..507 1..507 2702 99 Plus
Dsec\GM12054-PA 362 GM12054-PA 8..156 2..150 529 67.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12598-PA 507 GD12598-PA 1..507 1..507 2723 99.6 Plus
Dsim\GD17188-PA 481 GD17188-PA 8..280 2..275 914 63.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17950-PA 504 GJ17950-PA 1..504 1..507 2494 90.6 Plus
Dvir\GJ13733-PA 503 GJ13733-PA 1..503 1..507 2386 86.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10534-PA 507 GK10534-PA 1..507 1..507 2641 95.9 Plus
Dwil\GK16259-PA 403 GK16259-PA 1..402 1..459 1113 55 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20001-PA 507 GE20001-PA 1..507 1..507 2721 99.4 Plus
Dyak\GE17162-PA 453 GE17162-PA 8..296 2..287 912 60.5 Plus

LD21785.hyp Sequence

Translation from 279 to 1802

> LD21785.hyp
MNLSFAGCGFLGIYHVGVAVCFKKYAPHLLLEKIGGASAGSLAACCLLCD
LPLGSMTSDFFRVVNEARRYSLGPFSPSFNIQTCLLEGLQKHLPDDAHKR
VNGRLHISLTRVYDGKNVIISEFESREEVLQALLCACFIPGFSGILPPRF
RGVRYMDGAFSDNLPILDENTITVSPFCGESDICPRDQSSQLFHLNWANT
SIEISRQNINRFVRILFPPRPEFLSKFCQQGFDDALQFLHRNNLINCRRC
VAVQSTFVVSETVAQPQEFDPECRECKKHRKDALSSNMPQTVLDVIQDYI
EQANKGLANWIFKHRGIKLLSLPATVPMDFLLATISKISALTPKLTKQAR
VMVEDLILQLNHAMRIRLLNKFTLYDQPHFDATGLLHSSRLYGPRVSILV
DECGATPLEDDVDNFEHVLKMTTHNDALYAYYYTDSNTNKVKVTEIFDFD
EITEHDKLATDLQIYEGSVEDHPNPHQHSHNTVVSEWNGVESVQVMPTTP
ELHDVAF*

LD21785.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
bmm-PA 507 CG5295-PA 1..507 1..507 2686 100 Plus
bmm-PB 553 CG5295-PB 1..492 1..492 2607 100 Plus
dob-PA 480 CG5560-PA 8..293 2..288 937 61.2 Plus