Clone LD21810 Report

Search the DGRC for LD21810

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:218
Well:10
Vector:pOT2
Associated Gene/TranscriptCG10383-RA
Protein status:LD21810.pep: gold
Sequenced Size:2859

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10383 2007-09-28 Manual selection by Ken Wan
CG10383 2008-04-29 Picked prior to 5.5
CG10383 2008-12-18 5.12 accounting

Clone Sequence Records

LD21810.complete Sequence

2859 bp assembled on 2008-10-07

GenBank Submission: BT046155.1

> LD21810.complete
AAATTCGCCAGCAATAAGAGCTCAACAGACAAGCAAAAGCAAGCAACAAA
ACAAACTATAAGCAGTCCCAGTGACAGCTACAAAGTCTAAACAGTCCCTA
GTGCTATCATTTGCATGGGCCAGTGTGTGTGATACAATCGTCTAAATTTA
AAGTGTGAAAAACTGAGCAAACTTTTGGCAGTCGACTGCAGAGTGAATCC
CGTTAGTGTGTGTGCCTAGTGCTACACTGAAAAACAAAGAAACACTTGAA
ACAAAACCATCAGAAAGCAGGCAATGTCATTGGAGGATCTCAAGATCAAG
CTGCGCCGTCATCCGAAGTTATTGGGCCTTGGAGGAGTTGGCCTTATTAC
TGCTGCTGGTTTCTTGCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTT
CCCAATATGTGGACAAGAAATCGCCGGAGCCGGACAAACGGCGTGCCGAG
TACATCTACATCAAATACCACATCTACCGCGAGTCCATGCGAAAGTTGAA
GCAGAAAGAGGAGGACGAGAAGAAGTGGATCAGCGTGATCATCAACCCGA
TTGGGAAATGGTGGAAGGCGGCTAAGCACTCGGTGGCCTGGCGTCTGCTC
AATATCGCCCAAACTGGCAGCCAGCCGGAACGCCTCAAGGCGGTCCAGCA
GCTCATCTGCATGGATCACTTGAAGGACTGGGATTTCCGTCATCTGGCCC
AAATCTGCGATGCCCGCACGGCTGTCTCCTTGGCCCGTTGCAATGCCGAC
ACGCGATGGTTTATGCCCGTTCCCCGACGTGGGTGCATTAAGAATCCCAA
GATGCTCCTCTCGGAACTTCACGTGATGCTGGCCCGGCTGCGACCCATGG
CCTGCATTGACCACTTCTTCAGCAAATACTTTCCCGAACAGGATCCCATT
GAGGACATTCACGAATACTTGACCCAGGAGCAGACAATAGTCCTTTCCAC
AGCCGACACGGACTTACTAAAAGAAATCATTTCATTCCTGCACCATATTA
CAAAGGATCCCGAGGTCTCCGCCAGGCTTATGAGGGACGGAGGCCTCGTG
CATCTCATGGAGCTACGAAAAATATTCAACGACGACAACGAGACCTTATC
GACTTTGTGCAAAGTGTTGGCCAATATGTCCCTGGTGCCCGATGCCGTGG
AACATTTCTTTACGTCCGGATGGGTGGGCGCCCTGGCCGAGTGGCAACAA
TGCCCAGATCTCCGCCTGCAGGTGATCTCGGCTAAAACTATGGCCAATCT
GGATCACGACGATCCGAACCAGTGCACGTATCCGCCAAATGTCTATCCCC
TGCATCCACGAGTTCGCACCCGCAGGAAGCCAAAGGCAGACATTGTTTTC
GTCCATGGATTGCTGGGAGGTGTTTTTATCACCTGGCGTCAGCGAGATAG
AAAGCCCACTGAGCTGGGTCTCTACGGAAAAAACGCCTTCTATACCAGCG
AAACAGACGACGTATTTCTGGTGGGTGAGCAGAAGAGACTCAGTGGAGGC
AAACTAAAACCCGGCGAGGCGGTCAAAAATGTCAATGGCAACCAAAAGAC
AGAAACAATCAAAGATCCTGTCTTGAAAGCTAGCAAAAAAGTGGAGGAAC
AGCGTCTGAACATTAGCGATGCTGCCACCAAGGAGTTCGTGGAGACACTG
AGAAACGAAGCCGAGTTGGACTCGGATTGGGAAGTGGTCCATCCCGATGT
TCCTCTTAATGCCAACGAGGAGTGCGAAGGAAAATTTAGTGTGTGCGGAA
GCGAATGGCGGAACCAGGACACAAGTGAGGAGTACACCAACTGCTGGCCC
ATGGAGTGGCTGCCAGATGATTATCCAGATTCCAGAATTCTGGGCATAGA
TTACACATCAGCAGTCACAGAGTGGTCTGCCAATTTTACCAAATACTGTC
CGTGTGAAAAGGGTCAGGGTCACATTGATGTGAGAGCCAACACACTGCTC
GACAGGATTTCAGCGTCGGATGTGGGCAACGATCGTCCGATCGTGTGGAT
AGGACATTCCATGGGCGGCCTGCTGACCAAGCTAATACTGCTAAAATCCC
TGGACTCCCAAGAGCCGAAGGTCCAACAGCTGACCAAGAACACTAAAGGC
ATTGTATTTTTGGGAACCCCACACCGGGGCTCACCAATTGCCAAGTGGAA
GCAGCACATGCAGATGATCCTGTCTCCATCAATCGAGGTCAAAGAGATGG
AAGAGAACTCGCCGAAGCTGCTGGAGATGCACCGCCGCTTTATGGGGTGC
TTGCACACGCTACTGCGCCATGTAAAGGTGGTCAGTGTAGCTGAAGGATC
CCCTACCATGTTGACCTCGTTCAAGTTCCCCCTGCGCATTGTCACCGAAG
AGTCCTCTAAGATAGATTTCGGGGACTTCTATCTGCTGAAGGATGATCAC
TTGAGTCTCTCCAAGCCCATTTACAGGCAATCGTTTCTGTATCAGAGATT
ATTGCACGTGATCCGCGAGGCCATTAAGGAACGATCAGATCCCAAAGATC
AGGATGGCCAGTCACAAAGCACTTCGAATCAAGATGTAGTGCTTGTCAAG
ATCGTAGCTGCTCTGTTGGAGGGAGCCAAGGGTCTGTTCGAATCGCTGCC
CAGAGTCGCCCTCAGATTTAGCACTTAGGATGGGCCAAGTCCCACTAAAC
ACCAGTACCCTAATAGTATCCCGACTAGTCTTTAAAGACTTGTAAAGTAT
TTTCTACACGAACCCTCACCATCATGACCATTCATCTTTGTAAATACTCC
AGCACTCCATATAGTTTTTTACACCCGAATCCTAACTTATTATTCTCGGT
CTCCGACTAAAACGTTTGAATAAAGATACATGTGTAACACTAAAAAAAAA
AAAAAAAAA

LD21810.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10383-RA 3123 CG10383-RA 218..3060 1..2843 14215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18689647..18690925 2841..1563 6320 99.6 Minus
chr2L 23010047 chr2L 18690988..18691651 1564..901 3260 99.4 Minus
chr2L 23010047 chr2L 18691711..18692258 901..354 2680 99.3 Minus
chr2L 23010047 chr2L 18693789..18694141 353..1 1765 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18690902..18692182 2843..1563 6405 100 Minus
2L 23513712 2L 18692245..18692908 1564..901 3320 100 Minus
2L 23513712 2L 18692968..18693515 901..354 2740 100 Minus
2L 23513712 2L 18695045..18695397 353..1 1765 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18690902..18692182 2843..1563 6405 100 Minus
2L 23513712 2L 18692245..18692908 1564..901 3320 100 Minus
2L 23513712 2L 18692968..18693515 901..354 2740 100 Minus
2L 23513712 2L 18695045..18695397 353..1 1765 100 Minus
Blast to na_te.dros performed 2019-03-16 00:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3847..3883 2137..2102 119 83.8 Minus

LD21810.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:49:37 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18689647..18690923 1565..2841 99 <- Minus
chr2L 18690988..18691651 901..1564 99 <- Minus
chr2L 18691712..18692258 354..900 99 <- Minus
chr2L 18693789..18694141 1..353 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:24 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 1..2355 274..2628 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:14:31 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 1..2355 274..2628 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:58:06 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 1..2355 274..2628 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:13:39 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 1..2355 274..2628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:52:59 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 26..2866 1..2841 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:14:31 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 26..2866 1..2841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:58:06 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 30..2870 1..2841 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-12 16:28:39 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 26..2866 1..2841 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:13:39 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10383-RA 30..2870 1..2841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:37 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18690904..18692180 1565..2841 100 <- Minus
2L 18692245..18692908 901..1564 100 <- Minus
2L 18692969..18693515 354..900 100 <- Minus
2L 18695045..18695397 1..353 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:37 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18690904..18692180 1565..2841 100 <- Minus
2L 18692245..18692908 901..1564 100 <- Minus
2L 18692969..18693515 354..900 100 <- Minus
2L 18695045..18695397 1..353 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:37 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18690904..18692180 1565..2841 100 <- Minus
2L 18692245..18692908 901..1564 100 <- Minus
2L 18692969..18693515 354..900 100 <- Minus
2L 18695045..18695397 1..353 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:58:06 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18690904..18692180 1565..2841 100 <- Minus
arm_2L 18692245..18692908 901..1564 100 <- Minus
arm_2L 18692969..18693515 354..900 100 <- Minus
arm_2L 18695045..18695397 1..353 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:45:14 Download gff for LD21810.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18690904..18692180 1565..2841 100 <- Minus
2L 18692245..18692908 901..1564 100 <- Minus
2L 18692969..18693515 354..900 100 <- Minus
2L 18695045..18695397 1..353 100   Minus

LD21810.pep Sequence

Translation from 273 to 2627

> LD21810.pep
MSLEDLKIKLRRHPKLLGLGGVGLITAAGFLLYESPQVRRFLSQYVDKKS
PEPDKRRAEYIYIKYHIYRESMRKLKQKEEDEKKWISVIINPIGKWWKAA
KHSVAWRLLNIAQTGSQPERLKAVQQLICMDHLKDWDFRHLAQICDARTA
VSLARCNADTRWFMPVPRRGCIKNPKMLLSELHVMLARLRPMACIDHFFS
KYFPEQDPIEDIHEYLTQEQTIVLSTADTDLLKEIISFLHHITKDPEVSA
RLMRDGGLVHLMELRKIFNDDNETLSTLCKVLANMSLVPDAVEHFFTSGW
VGALAEWQQCPDLRLQVISAKTMANLDHDDPNQCTYPPNVYPLHPRVRTR
RKPKADIVFVHGLLGGVFITWRQRDRKPTELGLYGKNAFYTSETDDVFLV
GEQKRLSGGKLKPGEAVKNVNGNQKTETIKDPVLKASKKVEEQRLNISDA
ATKEFVETLRNEAELDSDWEVVHPDVPLNANEECEGKFSVCGSEWRNQDT
SEEYTNCWPMEWLPDDYPDSRILGIDYTSAVTEWSANFTKYCPCEKGQGH
IDVRANTLLDRISASDVGNDRPIVWIGHSMGGLLTKLILLKSLDSQEPKV
QQLTKNTKGIVFLGTPHRGSPIAKWKQHMQMILSPSIEVKEMEENSPKLL
EMHRRFMGCLHTLLRHVKVVSVAEGSPTMLTSFKFPLRIVTEESSKIDFG
DFYLLKDDHLSLSKPIYRQSFLYQRLLHVIREAIKERSDPKDQDGQSQST
SNQDVVLVKIVAALLEGAKGLFESLPRVALRFST*

LD21810.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14829-PA 785 GF14829-PA 1..785 1..784 3863 89.3 Plus
Dana\GF16126-PA 684 GF16126-PA 463..680 504..730 331 32.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21692-PA 785 GG21692-PA 1..785 1..784 4107 96.9 Plus
Dere\GG11483-PA 687 GG11483-PA 466..683 504..730 329 32.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10166-PA 796 GH10166-PA 1..796 1..784 3462 80.8 Plus
Dgri\GH13988-PA 675 GH13988-PA 454..673 504..732 333 31.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10383-PB 784 CG10383-PB 1..784 1..784 4136 100 Plus
CG10383-PA 784 CG10383-PA 1..784 1..784 4136 100 Plus
CG5455-PB 688 CG5455-PB 467..686 504..732 324 32.3 Plus
CG5455-PA 688 CG5455-PA 467..686 504..732 324 32.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14198-PA 788 GI14198-PA 1..788 1..784 3451 80.5 Plus
Dmoj\GI24844-PA 680 GI24844-PA 459..678 504..732 331 31.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18493-PA 785 GL18493-PA 1..785 1..784 3682 85.2 Plus
Dper\GL23861-PA 689 GL23861-PA 254..685 329..730 350 27.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10290-PA 800 GA10290-PA 1..800 1..784 3666 83.6 Plus
Dpse\GA18893-PA 687 GA18893-PA 466..683 504..730 338 33 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17071-PA 781 GM17071-PA 1..781 1..784 4145 98.3 Plus
Dsec\GM10327-PA 689 GM10327-PA 468..685 504..730 330 32.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21817-PA 462 GD21817-PA 1..462 323..784 2456 98.5 Plus
Dsim\GD21816-PA 320 GD21816-PA 1..314 1..311 1532 92 Plus
Dsim\GD21288-PA 689 GD21288-PA 468..685 504..730 330 32.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20441-PA 793 GJ20441-PA 1..793 1..784 3453 78.6 Plus
Dvir\GJ24488-PA 675 GJ24488-PA 268..673 354..732 357 27 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24341-PA 799 GK24341-PA 1..799 1..784 3675 83.4 Plus
Dwil\GK10949-PA 693 GK10949-PA 472..691 504..732 328 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12715-PA 787 GE12715-PA 1..787 1..784 4102 97 Plus
Dyak\GE23675-PA 687 GE23675-PA 466..683 504..730 329 32.6 Plus

LD21810.hyp Sequence

Translation from 273 to 2627

> LD21810.hyp
MSLEDLKIKLRRHPKLLGLGGVGLITAAGFLLYESPQVRRFLSQYVDKKS
PEPDKRRAEYIYIKYHIYRESMRKLKQKEEDEKKWISVIINPIGKWWKAA
KHSVAWRLLNIAQTGSQPERLKAVQQLICMDHLKDWDFRHLAQICDARTA
VSLARCNADTRWFMPVPRRGCIKNPKMLLSELHVMLARLRPMACIDHFFS
KYFPEQDPIEDIHEYLTQEQTIVLSTADTDLLKEIISFLHHITKDPEVSA
RLMRDGGLVHLMELRKIFNDDNETLSTLCKVLANMSLVPDAVEHFFTSGW
VGALAEWQQCPDLRLQVISAKTMANLDHDDPNQCTYPPNVYPLHPRVRTR
RKPKADIVFVHGLLGGVFITWRQRDRKPTELGLYGKNAFYTSETDDVFLV
GEQKRLSGGKLKPGEAVKNVNGNQKTETIKDPVLKASKKVEEQRLNISDA
ATKEFVETLRNEAELDSDWEVVHPDVPLNANEECEGKFSVCGSEWRNQDT
SEEYTNCWPMEWLPDDYPDSRILGIDYTSAVTEWSANFTKYCPCEKGQGH
IDVRANTLLDRISASDVGNDRPIVWIGHSMGGLLTKLILLKSLDSQEPKV
QQLTKNTKGIVFLGTPHRGSPIAKWKQHMQMILSPSIEVKEMEENSPKLL
EMHRRFMGCLHTLLRHVKVVSVAEGSPTMLTSFKFPLRIVTEESSKIDFG
DFYLLKDDHLSLSKPIYRQSFLYQRLLHVIREAIKERSDPKDQDGQSQST
SNQDVVLVKIVAALLEGAKGLFESLPRVALRFST*

LD21810.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10383-PB 784 CG10383-PB 1..784 1..784 4136 100 Plus
CG10383-PA 784 CG10383-PA 1..784 1..784 4136 100 Plus
CG5455-PB 688 CG5455-PB 467..686 504..732 324 32.3 Plus
CG5455-PA 688 CG5455-PA 467..686 504..732 324 32.3 Plus