BDGP Sequence Production Resources |
Search the DGRC for LD21828
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 218 |
Well: | 28 |
Vector: | pOT2 |
Associated Gene/Transcript | CG5171-RA |
Protein status: | LD21828.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1130 |
Gene | Date | Evidence |
---|---|---|
CG5171 | 2001-01-01 | Release 2 assignment |
CG5171 | 2002-05-15 | Blastp of sequenced clone |
CG5171 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5171 | 2008-04-29 | Release 5.5 accounting |
CG5171 | 2008-08-15 | Release 5.9 accounting |
CG5171 | 2008-12-18 | 5.12 accounting |
1130 bp (1130 high quality bases) assembled on 2002-05-15
GenBank Submission: AY118914
> LD21828.complete ATCAGGGATAGGTGTCGATAGCCGCTCGAGAAGTTCCAAGTACCCGGCTA CCTTAAGTGAAATCTATCGTATTTTTATTGGCATTACTTCTAAACGCGAC AAGGAGTTATCGGGAAATTGTGAAAATGCCTGAGAAACAAGTGGCACCTG TAATTAGTAATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATT TCTGAAAGTCCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCC CATTGCGGATAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCA TACTGCACAAGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCG GGTCGCGGACTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTAC ATATGCTGGTAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGC ACGATTACGAGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTT AGGGAGCTCAAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAA GAAGGTGTCACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGG ATCAGCAAAAGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGT GCGAATCAGGCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAA CAAGGGAGAGGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATT GGTCGCAGAAAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAA GATGCCATGAGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGC TGATGCCCAGATTCAAACTTATGCGGATTTCCGGTTGCCCAAGCAGGCTG TAATGACCGATCTTCTCAAATGGATAGCCAATGTGTATGTTTCTTAGATG TAATCGAATTTATAAAATCTAAAAAGTTTGTTGATTTGTTACATACATAT AATATAATTTGAAATTCTGTTTTTGCATAAGCAATATTGAAATTTAATAT AAAATGTATATGTATTTGATTAGTTAGTGGCATTAGAATAAATTATATGC TTTTAATCTAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5171-RC | 1255 | CG5171-RC | 30..1139 | 1..1110 | 5550 | 100 | Plus |
CG5171-RA | 1296 | CG5171-RA | 71..1180 | 1..1110 | 5550 | 100 | Plus |
CG5171-RB | 1543 | CG5171-RB | 373..1427 | 56..1110 | 5275 | 100 | Plus |
CG5171-RB | 1543 | CG5171-RB | 75..131 | 1..57 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 7402588..7403213 | 190..815 | 3085 | 99.5 | Plus |
chr2L | 23010047 | chr2L | 7403277..7403573 | 813..1109 | 1470 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 7402272..7402409 | 56..193 | 690 | 100 | Plus |
chr2L | 23010047 | chr2L | 7401974..7402030 | 1..57 | 270 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7403541..7404166 | 190..815 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 7404230..7404527 | 813..1110 | 1490 | 100 | Plus |
2L | 23513712 | 2L | 7403227..7403364 | 56..193 | 690 | 100 | Plus |
2L | 23513712 | 2L | 7402929..7402985 | 1..57 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7403541..7404166 | 190..815 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 7404230..7404527 | 813..1110 | 1490 | 100 | Plus |
2L | 23513712 | 2L | 7403227..7403364 | 56..193 | 690 | 100 | Plus |
2L | 23513712 | 2L | 7402929..7402985 | 1..57 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 2397..2477 | 989..1071 | 139 | 69.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1187..1276 | 1092..1006 | 128 | 62.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 7401974..7402030 | 1..57 | 98 | -> | Plus |
chr2L | 7402274..7402406 | 58..190 | 100 | -> | Plus |
chr2L | 7402589..7403210 | 191..812 | 99 | -> | Plus |
chr2L | 7403277..7403573 | 813..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RC | 1..822 | 126..947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RD | 2..891 | 58..947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RD | 2..891 | 58..947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RC | 1..822 | 126..947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RD | 2..891 | 58..947 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RC | 30..1138 | 1..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RC | 30..1138 | 1..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RA | 24..1132 | 1..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RC | 30..1138 | 1..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5171-RA | 24..1132 | 1..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7403229..7403361 | 58..190 | 100 | -> | Plus |
2L | 7402929..7402985 | 1..57 | 100 | -> | Plus |
2L | 7403542..7404163 | 191..812 | 100 | -> | Plus |
2L | 7404230..7404526 | 813..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7403229..7403361 | 58..190 | 100 | -> | Plus |
2L | 7402929..7402985 | 1..57 | 100 | -> | Plus |
2L | 7403542..7404163 | 191..812 | 100 | -> | Plus |
2L | 7404230..7404526 | 813..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7403229..7403361 | 58..190 | 100 | -> | Plus |
2L | 7402929..7402985 | 1..57 | 100 | -> | Plus |
2L | 7403542..7404163 | 191..812 | 100 | -> | Plus |
2L | 7404230..7404526 | 813..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 7402929..7402985 | 1..57 | 100 | -> | Plus |
arm_2L | 7403229..7403361 | 58..190 | 100 | -> | Plus |
arm_2L | 7403542..7404163 | 191..812 | 100 | -> | Plus |
arm_2L | 7404230..7404526 | 813..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7403542..7404163 | 191..812 | 100 | -> | Plus |
2L | 7404230..7404526 | 813..1109 | 100 | Plus | |
2L | 7402929..7402985 | 1..57 | 100 | -> | Plus |
2L | 7403229..7403361 | 58..190 | 100 | -> | Plus |
Translation from 125 to 946
> LD21828.pep MPEKQVAPVISNLEDFANNLPGYLISESPVAVLLDYDGTLAPIADNPAKT KMPVELEAILHKIAKHPKVFLAVISGRGLKDVQKQVNIDGITYAGNHGLE IEYPDGSRHDYELPTEIQKNYTQMVRELKEKVEKNGAWVEDKKVSLTYHY RDTPAALKDQQKQLASEICTKFGFRANQAHEAIEAKPPVNWNKGEAAVYI LKQKFGDNWSQKVSVVFAGDDTTDEDAMRVLRGLGRSFRISADAQIQTYA DFRLPKQAVMTDLLKWIANVYVS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15857-PA | 273 | GF15857-PA | 1..273 | 1..273 | 1276 | 85.7 | Plus |
Dana\GF21145-PA | 809 | GF21145-PA | 513..768 | 12..267 | 671 | 45.7 | Plus |
Dana\GF15858-PA | 276 | GF15858-PA | 1..270 | 1..271 | 581 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10474-PA | 273 | GG10474-PA | 1..273 | 1..273 | 1345 | 92.7 | Plus |
Dere\GG24998-PA | 809 | GG24998-PA | 513..768 | 12..267 | 667 | 45.3 | Plus |
Dere\GG10475-PA | 276 | GG10475-PA | 1..270 | 1..271 | 579 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13732-PA | 275 | GH13732-PA | 1..273 | 1..273 | 1179 | 76.9 | Plus |
Dgri\GH13731-PA | 273 | GH13731-PA | 1..273 | 1..273 | 1134 | 73.6 | Plus |
Dgri\GH13210-PA | 809 | GH13210-PA | 513..768 | 12..267 | 674 | 45.7 | Plus |
Dgri\GH13733-PA | 275 | GH13733-PA | 1..253 | 1..254 | 571 | 41.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5171-PF | 273 | CG5171-PF | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PE | 273 | CG5171-PE | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PD | 296 | CG5171-PD | 24..296 | 1..273 | 1417 | 100 | Plus |
CG5171-PA | 273 | CG5171-PA | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PB | 273 | CG5171-PB | 1..273 | 1..273 | 1417 | 100 | Plus |
Tps1-PA | 809 | CG4104-PA | 513..768 | 12..267 | 651 | 45.3 | Plus |
CG5177-PB | 276 | CG5177-PB | 1..270 | 1..271 | 585 | 41.5 | Plus |
CG5177-PA | 276 | CG5177-PA | 1..270 | 1..271 | 585 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23729-PA | 273 | GI23729-PA | 1..273 | 1..273 | 1186 | 78 | Plus |
Dmoj\GI22062-PA | 809 | GI22062-PA | 513..768 | 12..267 | 662 | 45.3 | Plus |
Dmoj\GI23740-PA | 276 | GI23740-PA | 1..253 | 1..254 | 583 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15110-PA | 809 | GL15110-PA | 513..768 | 12..267 | 673 | 46.5 | Plus |
Dper\GL25814-PA | 276 | GL25814-PA | 1..270 | 1..271 | 618 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18709-PA | 273 | GA18709-PA | 1..273 | 1..273 | 1218 | 79.9 | Plus |
Dpse\GA17960-PA | 809 | GA17960-PA | 513..768 | 12..267 | 673 | 46.5 | Plus |
Dpse\GA18712-PA | 276 | GA18712-PA | 1..270 | 1..271 | 572 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16411-PA | 273 | GM16411-PA | 1..273 | 1..273 | 1427 | 97.8 | Plus |
Dsec\GM18467-PA | 796 | GM18467-PA | 500..755 | 12..267 | 671 | 45.7 | Plus |
Dsec\GM16422-PA | 276 | GM16422-PA | 1..270 | 1..271 | 580 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23468-PA | 273 | GD23468-PA | 1..273 | 1..273 | 1430 | 97.8 | Plus |
Dsim\GD23282-PA | 809 | GD23282-PA | 513..768 | 12..267 | 672 | 45.7 | Plus |
Dsim\GD23469-PA | 276 | GD23469-PA | 1..270 | 1..271 | 580 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20926-PA | 273 | GJ20926-PA | 1..273 | 1..273 | 1169 | 76.6 | Plus |
Dvir\GJ16123-PA | 809 | GJ16123-PA | 513..768 | 12..267 | 661 | 45.3 | Plus |
Dvir\GJ20937-PA | 276 | GJ20937-PA | 1..270 | 1..271 | 570 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24303-PA | 272 | GK24303-PA | 1..272 | 1..272 | 1215 | 80.5 | Plus |
Dwil\GK24698-PA | 809 | GK24698-PA | 513..768 | 12..267 | 662 | 44.9 | Plus |
Dwil\GK24304-PA | 276 | GK24304-PA | 1..270 | 1..271 | 579 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14513-PA | 273 | GE14513-PA | 1..273 | 1..273 | 1382 | 94.1 | Plus |
Dyak\GE18284-PA | 809 | GE18284-PA | 513..768 | 12..267 | 667 | 45.3 | Plus |
Dyak\GE14524-PA | 276 | GE14524-PA | 1..270 | 1..271 | 580 | 41.2 | Plus |
Translation from 125 to 946
> LD21828.hyp MPEKQVAPVISNLEDFANNLPGYLISESPVAVLLDYDGTLAPIADNPAKT KMPVELEAILHKIAKHPKVFLAVISGRGLKDVQKQVNIDGITYAGNHGLE IEYPDGSRHDYELPTEIQKNYTQMVRELKEKVEKNGAWVEDKKVSLTYHY RDTPAALKDQQKQLASEICTKFGFRANQAHEAIEAKPPVNWNKGEAAVYI LKQKFGDNWSQKVSVVFAGDDTTDEDAMRVLRGLGRSFRISADAQIQTYA DFRLPKQAVMTDLLKWIANVYVS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5171-PF | 273 | CG5171-PF | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PE | 273 | CG5171-PE | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PA | 273 | CG5171-PA | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PB | 273 | CG5171-PB | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PD | 296 | CG5171-PD | 24..296 | 1..273 | 1417 | 100 | Plus |