Clone LD21829 Report

Search the DGRC for LD21829

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:218
Well:29
Vector:pOT2
Associated Gene/TranscriptCG9853-RA
Protein status:LD21829.pep: gold
Preliminary Size:1300
Sequenced Size:1354

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9853 2001-01-01 Release 2 assignment
CG9853 2002-07-13 Blastp of sequenced clone
CG9853 2003-01-01 Sim4 clustering to Release 3
CG9853 2008-04-29 Release 5.5 accounting
CG9853 2008-08-15 Release 5.9 accounting
CG9853 2008-12-18 5.12 accounting

Clone Sequence Records

LD21829.complete Sequence

1354 bp (1354 high quality bases) assembled on 2002-07-13

GenBank Submission: BT001480

> LD21829.complete
ACCGATAGTTTGTCATCGGGAAGCTGGTATATGTAAATACAAAATAAATT
ATAAAAATTGGCTTCCACATAATTGAGAAGGTCGCTGAAAGCGTACGAAT
AAACCCCGCAAATAACCAAATGTCTGCCGCCGAGACAGGTCCAATAGCCA
GCGGCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCC
AAGTTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGAT
GTATAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACT
GCCTGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAG
GAAAGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAA
GCGAGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCC
TAGGGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACC
CTTATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGG
CCACCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCA
ACATTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTA
TGTGGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGA
GATGGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGG
ATCGGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCC
AAGCTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTT
GTACTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGG
CCTTACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTA
AAGTACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGC
TGCTCATTCTGGCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCA
ATCGCCTTATGGCGGGCTTTGAGGAAGATGATGCGGACGATCATGACACG
ACCCTGAGGCGGCAAAACGAGAATAACGAACTGGAATAGCATGTATGCAT
TAATGAAGCATACCGAAGAGGGATCCTTTGTTGCTGGTCTTTTTGGTTGC
TCAAAGTCAATGAAGTTCTTTGCCACAAAATCATCGGGCTATTTTGTTAT
AACTTTAAATTGCTGTATGCTAAATAATTTTAAATAAGCGTATGGTCTTG
ATTATGCAAATTATAAAAAAATAGTTATTCAAACAAAAAAAAAAAAAAAA
AAAA

LD21829.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853.b 1770 CG9853.b 250..1588 1..1339 6695 100 Plus
CG9853-RB 1945 CG9853-RB 485..1823 1..1339 6695 100 Plus
CG9853-RA 1567 CG9853-RA 47..1385 1..1339 6695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 224277..225104 1334..507 4140 100 Minus
chr3R 27901430 chr3R 225458..225731 274..1 1370 100 Minus
chr3R 27901430 chr3R 225165..225400 506..271 1180 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4398553..4399385 1339..507 4165 100 Minus
3R 32079331 3R 4399739..4400012 274..1 1370 100 Minus
3R 32079331 3R 4399446..4399681 506..271 1180 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4139384..4140216 1339..507 4165 100 Minus
3R 31820162 3R 4140570..4140843 274..1 1370 100 Minus
3R 31820162 3R 4140277..4140512 506..271 1180 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:13:14 has no hits.

LD21829.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:14:15 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 224277..225104 507..1334 100 <- Minus
chr3R 225165..225399 272..506 100 <- Minus
chr3R 225461..225731 1..271 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:27 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 1..1020 120..1139 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:17:12 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 1..1020 120..1139 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:04:37 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 1..1020 120..1139 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:08:23 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 1..1020 120..1139 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:22:55 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 1..1020 120..1139 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:41:27 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 1..1334 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:17:12 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 485..1818 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:04:37 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 485..1818 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:08:23 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 1..1334 1..1334 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:22:55 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 485..1818 1..1334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:15 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4398558..4399385 507..1334 100 <- Minus
3R 4399446..4399680 272..506 100 <- Minus
3R 4399742..4400012 1..271 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:15 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4398558..4399385 507..1334 100 <- Minus
3R 4399446..4399680 272..506 100 <- Minus
3R 4399742..4400012 1..271 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:15 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4398558..4399385 507..1334 100 <- Minus
3R 4399446..4399680 272..506 100 <- Minus
3R 4399742..4400012 1..271 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:04:37 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 225464..225734 1..271 100   Minus
arm_3R 224280..225107 507..1334 100 <- Minus
arm_3R 225168..225402 272..506 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:40:20 Download gff for LD21829.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4139389..4140216 507..1334 100 <- Minus
3R 4140277..4140511 272..506 100 <- Minus
3R 4140573..4140843 1..271 100   Minus

LD21829.pep Sequence

Translation from 119 to 1138

> LD21829.pep
MSAAETGPIASGSAVSTGQRGVSRVLAKLSQSLAGGEFYEAHMMYRTLYF
RYTAQKRYQDCLELLFDGAQQLIAKEQESSAADLCLLLVDTLEKRGPQAE
DTDNFLWVPRLGALIRGLNSATVERETLIQRTIKWSTALHGQYGHPVLHK
LIAHVFWTEGNIESARHHYLLCQDGSLCGRVLIEISQSRGFQGEMDLFLV
QAVLQQLSLKDRKTAEDTFTEYTRYHAKLLKHEFPYKEPLVNFLYFLFRL
IDAKRVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYFDEHPEAAHSGPP
GLGGMFGDIFNRLMAGFEEDDADDHDTTLRRQNENNELE*

LD21829.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16811-PA 337 GF16811-PA 1..337 1..339 1493 84.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11609-PA 339 GG11609-PA 1..339 1..339 1688 95.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14232-PA 348 GH14232-PA 19..328 14..323 1287 74.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PC 339 CG9853-PC 1..339 1..339 1764 100 Plus
CG9853-PB 339 CG9853-PB 1..339 1..339 1764 100 Plus
CG9853-PA 339 CG9853-PA 1..339 1..339 1764 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22138-PA 342 GI22138-PA 23..342 19..339 1445 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22353-PA 336 GL22353-PA 17..333 18..335 1471 85.2 Plus
Dper\GL21464-PA 148 GL21464-PA 22..97 155..230 353 86.8 Plus
Dper\GL21464-PA 148 GL21464-PA 89..145 276..335 170 55 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22074-PA 336 GA22074-PA 17..333 18..335 1471 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10704-PA 339 GM10704-PA 1..339 1..339 1783 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19681-PA 339 GD19681-PA 1..339 1..339 1783 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24257-PA 343 GJ24257-PA 20..343 16..339 1434 80.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13758-PA 342 GK13758-PA 1..342 1..339 1341 72.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25354-PA 339 GE25354-PA 1..339 1..339 1662 94.4 Plus

LD21829.hyp Sequence

Translation from 119 to 1138

> LD21829.hyp
MSAAETGPIASGSAVSTGQRGVSRVLAKLSQSLAGGEFYEAHMMYRTLYF
RYTAQKRYQDCLELLFDGAQQLIAKEQESSAADLCLLLVDTLEKRGPQAE
DTDNFLWVPRLGALIRGLNSATVERETLIQRTIKWSTALHGQYGHPVLHK
LIAHVFWTEGNIESARHHYLLCQDGSLCGRVLIEISQSRGFQGEMDLFLV
QAVLQQLSLKDRKTAEDTFTEYTRYHAKLLKHEFPYKEPLVNFLYFLFRL
IDAKRVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYFDEHPEAAHSGPP
GLGGMFGDIFNRLMAGFEEDDADDHDTTLRRQNENNELE*

LD21829.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PC 339 CG9853-PC 1..339 1..339 1764 100 Plus
CG9853-PB 339 CG9853-PB 1..339 1..339 1764 100 Plus
CG9853-PA 339 CG9853-PA 1..339 1..339 1764 100 Plus