Clone LD21841 Report

Search the DGRC for LD21841

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:218
Well:41
Vector:pOT2
Associated Gene/TranscriptCG3313-RA
Protein status:LD21841.pep: gold
Preliminary Size:2200
Sequenced Size:1764

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3313 2001-01-01 Release 2 assignment
CG3313 2001-11-12 Blastp of sequenced clone
CG3313 2003-01-01 Sim4 clustering to Release 3
CG3313 2008-04-29 Release 5.5 accounting
CG3313 2008-08-15 Release 5.9 accounting
CG3313 2008-12-18 5.12 accounting

Clone Sequence Records

LD21841.complete Sequence

1764 bp (1764 high quality bases) assembled on 2001-11-12

GenBank Submission: AY069488

> LD21841.complete
TTTGCGGATGATAACCCGTAAAGCAAAAGACAACAAATCGGATTAAACAA
TTACCTTAAGATGTTCAACGGGATGGTGAGAACCATCCGCGACAGCGTCG
TGGGCACCTATCCGTCCTGCCACGTATCCTCGCGGCTGGAGGAGCGCAGG
GCCAAGCAGCGGGCGATGCGACAGGAGCGTAGACGAAAACCGGACAAACC
AGACGACTTTGTTACTTACGAGGATTCCGGCAGCGACGAGGAGACGCCCC
AACAGCAGGAGGAGGTCCTGAACACATCCTACAACCTGTGCGACTACCTG
CGCAGCCGGGAGAGTGGACTCCGAGATCGTCGCAGTGTCAATGTGGAGTA
CACCAGCCGCTATGTGCTAACCCACGACATGCTGCGCGAGACGCAGATTA
GTCTGGGCTACATCAACAAGGTCTTCTGCTCCAAGTGGCTGAGCAGTCGA
CAAGTGGTTTTCGGGACCAAGTGCAATAAACTGCTCGTCTACGATGTGAA
CATGCGCCGGGTGGACGCCATCCCAACGCTCTCAAATAGCCGGGCAAACC
ATCCTGAGGTCCAGGGTGGCCTGCATGCCATCGAGCTGTCGCCCAGCCGA
TCCTTCCTAGCCACCGGTGCGCGCAACTCCTCCGATATTGCTGTTTACCG
ACTGCCTACGCTGGATCCCGTCTGTGTGGGCGAGGGTGGGCACCGCGACC
TTATAATGGGCATGTGCTGGCTGGATGACCAGTTTCTTGTGTCCGGATCG
AAGGACTCGCGCATGGCTCTGTGGCGCATCAACGAGGATCACATGGAGTT
TCCAGATGGCGGCGAGGAAGCGTGTCCCACATTCGCAACCATCCACCCCC
TTAGTGTCAAGGAAGTTCGCACTGCCCAGAGGATTCGATCTCTTTGCTTC
AACAAGGAGTTTAAGGAGATCGCCGCCCTCTCGCTGAACGGATACATTCA
CATCTTCAATGCGGAGACCTTCAAGCAGACACTCTCACGAAAGCTGCCAA
ACTGCCAGGACAACGTGAGCATCGCCTACCACAGCGACGGCCTTTATGCC
GTTGGATGCCGTTCCTATACCATCCTTTTGGACGCCCGAACCCTTCAAAC
CATTAAGAAGATCACATCTCGATACAGTGGCTGCGGTATACGGGCGACTT
CGTTCGAAGGTAACCTGCTCACCGTTGGCACGGGTCTGGGCATGCTCCTA
TTCTACGACATTCGAGCCGGAAAGTATTTGGAGAGCAGTGTGAATGCCTC
GCGCACAGTCGCACTCAAGTGCAGCAAAGGAATTGTGTATCCGGAGGATG
AGATGGATGGCTTCCAGCAGGTGAAGTATGTGCCCGCCATCTACACCCAC
TGCTATGACAGCACTAGGATGCGCCTCTTCGCTGCAGGAGGACCACTGCC
GGCGACTTTGGTGGGCAACTATGCGGGCGTTTGGCAATAGATTGGCATAG
GATCCGATCCGGGCTCACAATACTGATTAGTATTTAAGTAGTTATTCGAC
TTGTGATCTTTAATCTTTTGGCGCATTTCGATTCAAATCGTTCACCTGCA
TATGTATTCCGCCAAGACAGAATTTTTATTTAACTTGATTACTCACTTTT
GGTTTTAATGAAATTTATGTAAGATTTATGTTAATGATATTTTATATTGT
GTGTAAACAATATACACCGTTTAAAAGTGTAAATGTAAGCATAAATACCG
ATCCTATTTATATATAGTACATACAATACAAATAATGGAATACTAAAAAA
AAAAAAAAAAAAAA

LD21841.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-RA 1972 CG3313-RA 154..1899 1..1746 8730 100 Plus
CG3532-RB 4075 CG3532-RB 3914..4075 1746..1585 810 100 Minus
CG3532.a 4024 CG3532.a 3903..4024 1746..1625 610 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7841377..7841931 882..328 2775 100 Minus
chr3R 27901430 chr3R 7840392..7840849 1744..1287 2275 99.8 Minus
chr3R 27901430 chr3R 7840913..7841318 1287..882 1970 99 Minus
chr3R 27901430 chr3R 7842001..7842327 327..1 1635 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12015928..12016482 882..328 2775 100 Minus
3R 32079331 3R 12014941..12015400 1746..1287 2300 100 Minus
3R 32079331 3R 12015464..12015869 1287..882 2030 100 Minus
3R 32079331 3R 12016552..12016878 327..1 1635 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11756759..11757313 882..328 2775 100 Minus
3R 31820162 3R 11755772..11756231 1746..1287 2300 100 Minus
3R 31820162 3R 11756295..11756700 1287..882 2030 100 Minus
3R 31820162 3R 11757383..11757709 327..1 1635 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:34:18 has no hits.

LD21841.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:34:58 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7842001..7842327 1..327 100   Minus
chr3R 7840392..7840848 1288..1744 99 <- Minus
chr3R 7840913..7841317 883..1287 99 <- Minus
chr3R 7841377..7841931 328..882 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:28 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 1..1380 61..1440 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:48 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 1..1380 61..1440 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:04:59 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 1..1380 61..1440 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:26 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 1..1380 61..1440 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:33:49 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 1..1380 61..1440 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:04:45 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 154..1897 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:48 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 154..1897 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:04:59 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:26 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 154..1897 1..1744 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:33:49 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 40..1783 1..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:58 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12014943..12015399 1288..1744 100 <- Minus
3R 12015464..12015868 883..1287 100 <- Minus
3R 12015928..12016482 328..882 100 <- Minus
3R 12016552..12016878 1..327 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:58 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12014943..12015399 1288..1744 100 <- Minus
3R 12015464..12015868 883..1287 100 <- Minus
3R 12015928..12016482 328..882 100 <- Minus
3R 12016552..12016878 1..327 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:58 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12014943..12015399 1288..1744 100 <- Minus
3R 12015464..12015868 883..1287 100 <- Minus
3R 12015928..12016482 328..882 100 <- Minus
3R 12016552..12016878 1..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:04:59 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7840665..7841121 1288..1744 100 <- Minus
arm_3R 7841186..7841590 883..1287 100 <- Minus
arm_3R 7841650..7842204 328..882 100 <- Minus
arm_3R 7842274..7842600 1..327 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:26 Download gff for LD21841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11755774..11756230 1288..1744 100 <- Minus
3R 11756295..11756699 883..1287 100 <- Minus
3R 11756759..11757313 328..882 100 <- Minus
3R 11757383..11757709 1..327 100   Minus

LD21841.pep Sequence

Translation from 60 to 1439

> LD21841.pep
MFNGMVRTIRDSVVGTYPSCHVSSRLEERRAKQRAMRQERRRKPDKPDDF
VTYEDSGSDEETPQQQEEVLNTSYNLCDYLRSRESGLRDRRSVNVEYTSR
YVLTHDMLRETQISLGYINKVFCSKWLSSRQVVFGTKCNKLLVYDVNMRR
VDAIPTLSNSRANHPEVQGGLHAIELSPSRSFLATGARNSSDIAVYRLPT
LDPVCVGEGGHRDLIMGMCWLDDQFLVSGSKDSRMALWRINEDHMEFPDG
GEEACPTFATIHPLSVKEVRTAQRIRSLCFNKEFKEIAALSLNGYIHIFN
AETFKQTLSRKLPNCQDNVSIAYHSDGLYAVGCRSYTILLDARTLQTIKK
ITSRYSGCGIRATSFEGNLLTVGTGLGMLLFYDIRAGKYLESSVNASRTV
ALKCSKGIVYPEDEMDGFQQVKYVPAIYTHCYDSTRMRLFAAGGPLPATL
VGNYAGVWQ*

LD21841.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17751-PA 449 GF17751-PA 1..449 1..459 2395 97.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17167-PA 459 GG17167-PA 1..459 1..459 2469 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12295-PA 459 GH12295-PA 1..459 1..459 2432 96.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
DCAF12-PB 459 CG3313-PB 1..459 1..459 2409 100 Plus
DCAF12-PA 459 CG3313-PA 1..459 1..459 2409 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24059-PA 459 GI24059-PA 1..459 1..459 2442 97.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21583-PA 459 GL21583-PA 1..459 1..459 2425 96.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17305-PA 459 GA17305-PA 1..459 1..459 2425 96.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26047-PA 459 GM26047-PA 1..459 1..459 2480 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20610-PA 433 GD20610-PA 1..433 1..459 2262 92.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23684-PA 459 GJ23684-PA 1..459 1..459 2433 97.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14186-PA 459 GK14186-PA 1..459 1..459 2440 97.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24558-PA 459 GE24558-PA 1..459 1..459 2473 99.3 Plus

LD21841.hyp Sequence

Translation from 60 to 1439

> LD21841.hyp
MFNGMVRTIRDSVVGTYPSCHVSSRLEERRAKQRAMRQERRRKPDKPDDF
VTYEDSGSDEETPQQQEEVLNTSYNLCDYLRSRESGLRDRRSVNVEYTSR
YVLTHDMLRETQISLGYINKVFCSKWLSSRQVVFGTKCNKLLVYDVNMRR
VDAIPTLSNSRANHPEVQGGLHAIELSPSRSFLATGARNSSDIAVYRLPT
LDPVCVGEGGHRDLIMGMCWLDDQFLVSGSKDSRMALWRINEDHMEFPDG
GEEACPTFATIHPLSVKEVRTAQRIRSLCFNKEFKEIAALSLNGYIHIFN
AETFKQTLSRKLPNCQDNVSIAYHSDGLYAVGCRSYTILLDARTLQTIKK
ITSRYSGCGIRATSFEGNLLTVGTGLGMLLFYDIRAGKYLESSVNASRTV
ALKCSKGIVYPEDEMDGFQQVKYVPAIYTHCYDSTRMRLFAAGGPLPATL
VGNYAGVWQ*

LD21841.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-PB 459 CG3313-PB 1..459 1..459 2409 100 Plus
CG3313-PA 459 CG3313-PA 1..459 1..459 2409 100 Plus