Clone LD21888 Report

Search the DGRC for LD21888

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:218
Well:88
Vector:pOT2
Associated Gene/TranscriptUbe3a-RA
Protein status:LD21888.pep: gold
Preliminary Size:3498
Sequenced Size:3667

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6190 2001-01-01 Release 2 assignment
CG6190 2001-11-29 Blastp of sequenced clone
CG6190 2003-01-01 Sim4 clustering to Release 3
As 2008-04-29 Release 5.5 accounting
As 2008-08-15 Release 5.9 accounting
As 2008-12-18 5.12 accounting

Clone Sequence Records

LD21888.complete Sequence

3667 bp (3667 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069489

> LD21888.complete
TTGCTGCCTGCTTCATTCATAAACACTTACGCTATTACAGTCAAAATTGT
CAAAACGTTGACGAATTATCGAGCTTTAAAGGATTGCTATCAGATTGCAA
GGAAGTCGGCGTTCAGCGCTCGACGAGCGGGCAACAGAGGCAACGGCAGC
GGCTGAGTAGCTTCAGCATAAGAATTTTAGGTAGCCGCGACACAAAAAAG
GGACATCAACATCGATTTTTTTTTGCTCCCATTTCGTTTTGTGAGTGGAG
CAAAATCACTTTCGACAAACAAAGAAAGGGGCGGCGGCGGTGGGGGCGTA
AAGTGCGCAGATTTCAGCGAAGATGAACGGTGGCGGGGGTGGCGAGGATG
ATCAGCATCTGCCAGGTGTTTCCAGTGCATCAGGATCTGCAGCTGGAGCG
GTGGGCGGGCGAGCCACGCCCGAAATGAAGCGTTCGGCGGTGCGCAGCCT
AATCAAGCGATACTTCCACCAACTACAATCCGGCTGTGGGAACGCCAACT
GCAGCAATGCCAATTGCGCCTCCAGCGGCAAGGTGGCGCCCATGACGCCC
AACGAGGTGGCCGCCAGAGCACTGCAGCTCTTTTCACAGGATGCACAGCT
CTGCGAGGCGTTCACATCGGAGGCCAACAGCCCCCAGGACGTGGACATGC
TTTCGCCGAACGACAGTAGCAGTAGTAGCAGCGGCAGCTCGACAAGCACA
ATTACCTCAGCCAGTACCACCACGACAACCAGCAGACAATCGCAGTCAAC
GCCAGCTGCCGTTGTAGTGCCCGTATCCAGTCCATATCTTACCCAGAGTG
TGCCGCAACTGGATATCGCCGGCGCTGAACACTCCTCCGGCGACTCGGAA
CCGTGTACACCCACCCTGGCGCCAGTCCACAGCTTGGATGCCAACAGTCT
GATAGCGCTCTATGAGCAATGTAGGGCGGCTGACAGTTACGACAGGATTT
GCCACGCAATCGGCGTTGTGTTCTCCAGCGTAGATAGACTGGGCAAGAGC
TTCATTCGCAGCGCAGAACCAGCGGCTTCTAGTAGTCTCCAGGAGCTGCT
GGCCAATTCACCGGGGGCTTTAAACAAGGAGCAGCTACGAACTTTGGAAG
GGGAACACGATAAAGACGAAGACAGTACACAACAGGTGGACGAACAATCA
GAATCGGCGGCTAATGCTACTGCTACTGCAGAATCAGTCGAATCAGAGGC
GGAGCCCGAAGAAGAGGACGATGATGTGTGTTCATCCCAAAGCAGCGACA
CACTGGTGGATCTGCCCGGTTTGCGACGAGTGCAGCGTCTCCTTTTTGGC
TGTCAAATACGAGCTATAACGGAGAAGCTTACCAGCAGCGTTATTCAGCT
GTCTGACTGGGTGATTTACATGCGTACGGATTGGGAGAGGGTCATTCACT
GTCTGGTCATCTGCTTTGATCTAGCCACCAATACCAATAACAGTGTGGTG
GACATGGACTATCTGGACAGGGTGCTGCCAAAATTGTGCCAAGCGGCGTC
GGCCATGCCAGTGCCGGCACAGGCGCGCCTGGCCAGGATCTGGGCTGCTC
ATTGTTCAGATCAGCTGCATTCGTTGATCGCAGCCTGCCAGCAGCAAATT
ACTCTACAGGTGCTTTTGGACGAGGAATCCATGCGCGAGAACGAATCCAT
AATCAGTGTCACCAAAGTTTTAAAGATTGTCTTCTACGCGAACATTCTGG
CTAGCGAGCTGGAGCGACCGTCGTGTCGGGTGCCGCTGGAGGATCGAACG
GAAGCGGCGACCGCATCTGGCAGCGCAGCAGTGGAGGACGACCTATTCGT
CTACAACTCTTTGTTGGAGCCGCACATGCCCAAATTCGCCGAGGATCAGT
TTGAAAAGGAGCTGCAGGTGTCGGCAATCGATTGCCGGAAACCACTGATA
CCACTTGAGGAGTTCTACAACGAGGCACTCAGTGAAAACATTCAGATGCA
CCACGACTACCTGTCCTACAAGACGTTAGCCATGGAGAGCGAGATTGGTT
CCGGCCACGCGAACTATTTTTCGTTCATGCTGTACGCCTTTATCCTCACG
CCGTCAACAAAAGTGGATGCCTTGTACTATGACAGTCGAATGAGGATGTA
TAGCGAGCGCTACTCCTCCCTTCACTCCATCCTCAACAATATTGGCCAGG
TAGGACAGGAAGATAATCCTCGGCCGGATCTTAAGCTGACGGTGCGAAGG
GACCAGCTCATCAACGACGCACTTATTGGGCTGGAAATGGTGGCCATGAG
CAATCCAAAGGATCTCAAGAAGCAGTTGGTGGTGGAGTTTGTCGGCGAGC
AGGGGATCGATGAAGGCGGCGTATCCAAAGAGTTCTTCCAGCTAATCGTG
GAGGAGATATTTAACCCGGCTTTTGGAATGTTTATACAGCAAGAGGAGAC
CAACAATATGTGGTTCAATGCCACACCATTTGAGAACGGAGCGCAATTCA
CTCTGATTGGTATAATTATTGGCCTGGCGATCTATAACAACGTCACCCTG
GCCGTAAACTTCCCCATGGTGGTCTATCGCAAGTTGATAGGCTATTGCGG
CACGTTCGCAGACCTCAGCGACTGGAGTCCGGCGCTGTACAAGAGTCTGA
AGTCCATGCTGGACTATCAGGGCCAGGATATGGAGGAGGTATTCGAACAG
ACCTTCAAGATTAGCTATAGCGATGTTTTCGGTGATGTGGTACAACACGA
ACTGGTGCCGAACGGCCAGGATGTACTGGTGGGGCAGCACAACAAGGAAC
TGTTTGTCAACCTGTACAGTGATTTCCTGCTTAACACGAATATCGAACAG
CAGTTCAATGCTTTCCGCAAGGGCTTCGAAATGGTTACGGACGAATCGCC
ACTGAAGCTGCTCTTCCGTCCAGAGGAGATTGAAATGCTGGTCTGCGGCA
GTCGTGAATTCGACTTTGTGGAACTGGAAAACTCCACTGTGTACGAGGGC
GGCTACACGGAGAAGAGCCAGTACATCCAGGACTTCTGGAGCATAGTGCA
TGCGATGCCCAGCGAGGACAAGCACAAGCTGCTCGAATTCACGACGGGAT
CGGCGCGTGTTCCGGTTGGCGGCCTGAAATGCCTGCGTCTGCTAATCACG
CGTCACGGTCCGGATAGCGATCGGTTGCCTACCTCGCACACCTGCTTCAA
CGTTCTCCTCCTGCCCGAGTACAGCAGCCGCGAGAAGCTGGAGGAGCGCC
TGATGAAGGCCATCAACTACTCGAAGGGCTTCGGCATGCTGTAGACTATG
GTCCAAACTGCAAGTGCAAGTCTGTCATCTGGAACTGATACCACCACCTC
TCTGGGAAGAAGATTTCGAAGACTTTGATCGGTTTGAGTTCGTTTTGGGT
TCTGCCATTTATTTTTGATACGACCTGTTCAATGAGACAATATATACATA
CCCAATATATGTGCTCAATTTATATGGTGCGACGGCGAAGCGAGCAGACC
GAACGGACACGCGATTTTGTTTCCCTTCTTTAGCCCAGTTAATTGTACAT
AAACACACACATAAACACGCCACATACTACATTATGTGAACTTACCCTAG
GAACAACACCCACATTTAAAAACAGTACGCGCTGAATATTTTCCTAAATA
AATTTAAAGTAGTTCGGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

LD21888.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
As-RA 3867 As-RA 141..3765 1..3625 18110 99.9 Plus
As.a 3669 As.a 53..3669 1..3619 18040 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11199799..11200603 1433..629 4025 100 Minus
chr3L 24539361 chr3L 11197292..11198005 3619..2906 3570 100 Minus
chr3L 24539361 chr3L 11198875..11199431 2230..1674 2785 100 Minus
chr3L 24539361 chr3L 11198067..11198561 2906..2412 2475 100 Minus
chr3L 24539361 chr3L 11201024..11201398 375..1 1875 100 Minus
chr3L 24539361 chr3L 11200706..11200963 630..373 1290 100 Minus
chr3L 24539361 chr3L 11199495..11199736 1675..1434 1210 100 Minus
chr3L 24539361 chr3L 11198625..11198809 2414..2230 925 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11208929..11209733 1433..629 4025 100 Minus
3L 28110227 3L 11206416..11207135 3625..2906 3585 99.9 Minus
3L 28110227 3L 11208005..11208561 2230..1674 2785 100 Minus
3L 28110227 3L 11207197..11207691 2906..2412 2475 100 Minus
3L 28110227 3L 11210154..11210528 375..1 1875 100 Minus
3L 28110227 3L 11209836..11210093 630..373 1290 100 Minus
3L 28110227 3L 11208625..11208866 1675..1434 1210 100 Minus
3L 28110227 3L 11207755..11207939 2414..2230 925 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11202029..11202833 1433..629 4025 100 Minus
3L 28103327 3L 11199516..11200235 3625..2906 3585 99.8 Minus
3L 28103327 3L 11201105..11201661 2230..1674 2785 100 Minus
3L 28103327 3L 11200297..11200791 2906..2412 2475 100 Minus
3L 28103327 3L 11203254..11203628 375..1 1875 100 Minus
3L 28103327 3L 11202936..11203193 630..373 1290 100 Minus
3L 28103327 3L 11201725..11201966 1675..1434 1210 100 Minus
3L 28103327 3L 11200855..11201039 2414..2230 925 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:24:45 has no hits.

LD21888.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:43 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11197292..11198005 2906..3619 100 <- Minus
chr3L 11198068..11198560 2413..2905 100 <- Minus
chr3L 11198627..11198808 2231..2412 100 <- Minus
chr3L 11198875..11199429 1676..2230 100 <- Minus
chr3L 11199495..11199736 1434..1675 100 <- Minus
chr3L 11199799..11200601 631..1433 100 <- Minus
chr3L 11200706..11200960 376..630 100 <- Minus
chr3L 11201024..11201398 1..375 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:33 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
As-RA 1..2922 323..3244 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:09 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 1..2922 323..3244 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:27 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 1..2922 323..3244 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:53:27 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
As-RA 1..2922 323..3244 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:46 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 1..2922 323..3244 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:02:25 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
As-RA 53..3671 1..3619 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:09 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 53..3671 1..3619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:27 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 56..3674 1..3619 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:53:27 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
As-RA 53..3671 1..3619 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:46 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 56..3674 1..3619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:43 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11206422..11207135 2906..3619 100 <- Minus
3L 11207198..11207690 2413..2905 100 <- Minus
3L 11207757..11207938 2231..2412 100 <- Minus
3L 11208005..11208559 1676..2230 100 <- Minus
3L 11208625..11208866 1434..1675 100 <- Minus
3L 11208929..11209731 631..1433 100 <- Minus
3L 11209836..11210090 376..630 100 <- Minus
3L 11210154..11210528 1..375 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:43 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11206422..11207135 2906..3619 100 <- Minus
3L 11207198..11207690 2413..2905 100 <- Minus
3L 11207757..11207938 2231..2412 100 <- Minus
3L 11208005..11208559 1676..2230 100 <- Minus
3L 11208625..11208866 1434..1675 100 <- Minus
3L 11208929..11209731 631..1433 100 <- Minus
3L 11209836..11210090 376..630 100 <- Minus
3L 11210154..11210528 1..375 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:43 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11206422..11207135 2906..3619 100 <- Minus
3L 11207198..11207690 2413..2905 100 <- Minus
3L 11207757..11207938 2231..2412 100 <- Minus
3L 11208005..11208559 1676..2230 100 <- Minus
3L 11208625..11208866 1434..1675 100 <- Minus
3L 11208929..11209731 631..1433 100 <- Minus
3L 11209836..11210090 376..630 100 <- Minus
3L 11210154..11210528 1..375 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:27 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11199522..11200235 2906..3619 100 <- Minus
arm_3L 11200298..11200790 2413..2905 100 <- Minus
arm_3L 11200857..11201038 2231..2412 100 <- Minus
arm_3L 11201105..11201659 1676..2230 100 <- Minus
arm_3L 11201725..11201966 1434..1675 100 <- Minus
arm_3L 11202029..11202831 631..1433 100 <- Minus
arm_3L 11202936..11203190 376..630 100 <- Minus
arm_3L 11203254..11203628 1..375 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:29:35 Download gff for LD21888.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11201725..11201966 1434..1675 100 <- Minus
3L 11201105..11201659 1676..2230 100 <- Minus
3L 11199522..11200235 2906..3619 100 <- Minus
3L 11200298..11200790 2413..2905 100 <- Minus
3L 11200857..11201038 2231..2412 100 <- Minus
3L 11202029..11202831 631..1433 100 <- Minus
3L 11202936..11203190 376..630 100 <- Minus
3L 11203254..11203628 1..375 100   Minus

LD21888.pep Sequence

Translation from 322 to 3243

> LD21888.pep
MNGGGGGEDDQHLPGVSSASGSAAGAVGGRATPEMKRSAVRSLIKRYFHQ
LQSGCGNANCSNANCASSGKVAPMTPNEVAARALQLFSQDAQLCEAFTSE
ANSPQDVDMLSPNDSSSSSSGSSTSTITSASTTTTTSRQSQSTPAAVVVP
VSSPYLTQSVPQLDIAGAEHSSGDSEPCTPTLAPVHSLDANSLIALYEQC
RAADSYDRICHAIGVVFSSVDRLGKSFIRSAEPAASSSLQELLANSPGAL
NKEQLRTLEGEHDKDEDSTQQVDEQSESAANATATAESVESEAEPEEEDD
DVCSSQSSDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQLSDWVIYM
RTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQ
ARLARIWAAHCSDQLHSLIAACQQQITLQVLLDEESMRENESIISVTKVL
KIVFYANILASELERPSCRVPLEDRTEAATASGSAAVEDDLFVYNSLLEP
HMPKFAEDQFEKELQVSAIDCRKPLIPLEEFYNEALSENIQMHHDYLSYK
TLAMESEIGSGHANYFSFMLYAFILTPSTKVDALYYDSRMRMYSERYSSL
HSILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIGLEMVAMSNPKDLKK
QLVVEFVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNA
TPFENGAQFTLIGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSD
WSPALYKSLKSMLDYQGQDMEEVFEQTFKISYSDVFGDVVQHELVPNGQD
VLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVTDESPLKLLFRP
EEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDK
HKLLEFTTGSARVPVGGLKCLRLLITRHGPDSDRLPTSHTCFNVLLLPEY
SSREKLEERLMKAINYSKGFGML*

LD21888.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24560-PA 992 GF24560-PA 1..992 1..973 3942 79.8 Plus
Dana\GF24453-PA 1058 GF24453-PA 632..1058 531..973 698 35.2 Plus
Dana\GF14597-PA 963 GF14597-PA 608..960 620..970 472 32.3 Plus
Dana\GF11657-PA 1047 GF11657-PA 689..1046 621..972 466 30.6 Plus
Dana\GF10539-PA 1026 GF10539-PA 646..1022 591..970 445 29.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13928-PA 987 GG13928-PA 1..987 1..973 4529 90.1 Plus
Dere\GG14780-PA 1058 GG14780-PA 621..1058 520..973 694 34.9 Plus
Dere\GG24825-PA 948 GG24825-PA 593..945 620..970 471 32.3 Plus
Dere\GG21804-PA 1058 GG21804-PA 700..1057 621..972 467 30.3 Plus
Dere\GG13624-PA 1014 GG13624-PA 634..1010 591..970 449 29.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16658-PA 1073 GH16658-PA 69..1073 33..973 3343 68.9 Plus
Dgri\GH15214-PA 1052 GH15214-PA 617..1052 520..973 683 33.3 Plus
Dgri\GH10870-PA 965 GH10870-PA 610..962 620..970 472 32.3 Plus
Dgri\GH25213-PA 926 GH25213-PA 571..923 620..970 471 32.3 Plus
Dgri\GH20075-PA 1091 GH20075-PA 733..1090 621..972 454 30.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ube3a-PA 973 CG6190-PA 1..973 1..973 4990 100 Plus
Herc4-PA 1058 CG9153-PA 587..1058 479..973 730 34.9 Plus
Herc4-PB 1058 CG9153-PB 587..1058 479..973 730 34.9 Plus
Herc4-PC 1062 CG9153-PC 592..1062 479..973 730 35.1 Plus
Su(dx)-PF 949 CG4244-PF 594..946 620..970 455 32.2 Plus
Su(dx)-PE 949 CG4244-PE 594..946 620..970 455 32.2 Plus
Su(dx)-PA 949 CG4244-PA 594..946 620..970 455 32.2 Plus
Su(dx)-PB 949 CG4244-PB 594..946 620..970 455 32.2 Plus
Su(dx)-PC 949 CG4244-PC 594..946 620..970 455 32.2 Plus
Smurf-PB 1061 CG4943-PB 703..1060 621..972 438 30.4 Plus
Smurf-PA 1061 CG4943-PA 703..1060 621..972 438 30.4 Plus
Nedd4-PE 793 CG7555-PD 413..789 591..970 433 29.4 Plus
Nedd4-PK 834 CG42279-PK 454..830 591..970 433 29.4 Plus
Nedd4-PG 931 CG42279-PG 551..927 591..970 433 29.4 Plus
Nedd4-PF 956 CG7555-PB 576..952 591..970 433 29.4 Plus
Nedd4-PI 983 CG42279-PI 603..979 591..970 433 29.4 Plus
Nedd4-PH 994 CG42279-PH 614..990 591..970 433 29.4 Plus
Nedd4-PM 999 CG42279-PM 619..995 591..970 433 29.4 Plus
Nedd4-PL 1005 CG42279-PL 625..1001 591..970 433 29.4 Plus
Nedd4-PJ 1007 CG42279-PJ 627..1003 591..970 433 29.4 Plus
CG8184-PG 5101 CG8184-PG 4741..5099 617..971 416 30.4 Plus
CG8184-PE 5116 CG8184-PE 4756..5114 617..971 416 30.4 Plus
CG8184-PF 5127 CG8184-PF 4767..5125 617..971 416 30.4 Plus
CG8184-PC 5145 CG8184-PC 4785..5143 617..971 416 30.4 Plus
CG8184-PB 5146 CG8184-PB 4786..5144 617..971 416 30.4 Plus
CG8184-PD 5150 CG8184-PD 4790..5148 617..971 416 30.4 Plus
CG8184-PH 5151 CG8184-PH 4791..5149 617..971 416 30.4 Plus
CG42797-PF 434 CG42797-PF 55..433 598..972 413 29.2 Plus
CG42797-PC 436 CG42797-PC 57..435 598..972 413 29.2 Plus
CG42797-PE 1423 CG42797-PE 1044..1422 598..972 413 29.2 Plus
CG42797-PD 1426 CG42797-PD 1047..1425 598..972 413 29.2 Plus
CG3356-PA 1122 CG3356-PA 762..1119 618..970 374 31.2 Plus
CG5087-PB 1077 CG5087-PB 687..1074 615..970 359 27.6 Plus
CG5087-PA 1078 CG5087-PA 688..1075 615..970 359 27.6 Plus
CG4238-PJ 928 CG4238-PJ 564..928 620..973 335 27.5 Plus
CG4238-PG 928 CG4238-PG 564..928 620..973 335 27.5 Plus
CG4238-PE 928 CG4238-PE 564..928 620..973 335 27.5 Plus
CG4238-PH 962 CG4238-PH 598..962 620..973 335 27.5 Plus
CG4238-PF 968 CG4238-PF 604..968 620..973 335 27.5 Plus
CG4238-PI 977 CG4238-PI 613..977 620..973 335 27.5 Plus
CG4238-PD 977 CG4238-PD 613..977 620..973 335 27.5 Plus
ctrip-PM 2708 CG42574-PM 2407..2699 707..965 270 29.6 Plus
ctrip-PI 2736 CG42574-PI 2435..2727 707..965 270 29.6 Plus
ctrip-PH 2737 CG42574-PH 2436..2728 707..965 270 29.6 Plus
ctrip-PC 2737 CG42574-PC 2436..2728 707..965 270 29.6 Plus
ctrip-PL 2901 CG42574-PL 2600..2892 707..965 270 29.6 Plus
ctrip-PJ 2929 CG42574-PJ 2628..2920 707..965 270 29.6 Plus
ctrip-PE 2930 CG42574-PE 2629..2921 707..965 270 29.6 Plus
ctrip-PK 3111 CG42574-PK 2810..3102 707..965 270 29.6 Plus
ctrip-PF 3139 CG42574-PF 2838..3130 707..965 270 29.6 Plus
ctrip-PA 3140 CG17735-PB 2839..3131 707..965 270 29.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11616-PA 1033 GI11616-PA 220..1033 173..973 3102 74.2 Plus
Dmoj\GI13052-PA 1053 GI13052-PA 617..1053 520..973 730 34.6 Plus
Dmoj\GI18245-PA 961 GI18245-PA 606..958 620..970 474 32.3 Plus
Dmoj\GI18790-PA 1087 GI18790-PA 729..1086 621..972 463 30.7 Plus
Dmoj\GI12384-PA 988 GI12384-PA 608..985 591..971 444 29.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22837-PA 1367 GL22837-PA 22..644 13..608 1820 62.5 Plus
Dper\GL16177-PA 1052 GL16177-PA 615..1052 520..973 645 33.1 Plus
Dper\GL15308-PA 883 GL15308-PA 529..880 621..970 466 32.1 Plus
Dper\GL16786-PA 367 GL16786-PA 9..366 621..972 448 30.3 Plus
Dper\GL11879-PA 1027 GL11879-PA 647..1023 591..970 443 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19425-PA 1049 GA19425-PA 34..1049 13..973 3468 69.3 Plus
Dpse\GA28417-PA 1052 GA28417-PA 615..1052 520..973 643 33.1 Plus
Dpse\GA18056-PA 976 GA18056-PA 621..973 620..970 472 32.3 Plus
Dpse\GA18543-PA 1077 GA18543-PA 719..1076 621..972 462 30.3 Plus
Dpse\GA16742-PA 1027 GA16742-PA 647..1023 591..970 442 29.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24764-PA 966 GM24764-PA 1..966 1..973 5011 95.9 Plus
Dsec\GM14399-PA 1058 GM14399-PA 632..1058 531..973 741 37.4 Plus
Dsec\GM16849-PA 949 GM16849-PA 594..946 620..970 471 32.3 Plus
Dsec\GM21807-PA 1060 GM21807-PA 702..1059 621..972 466 30.6 Plus
Dsec\GM25709-PA 1013 GM25709-PA 633..1009 591..970 449 29.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12813-PA 963 GD12813-PA 1..963 1..973 5022 96.5 Plus
Dsim\GD13608-PA 1058 GD13608-PA 632..1058 531..973 732 37.4 Plus
Dsim\GD23128-PA 949 GD23128-PA 594..946 620..970 471 32.3 Plus
Dsim\GD11296-PA 1060 GD11296-PA 702..1059 621..972 465 30.6 Plus
Dsim\GD14716-PA 700 GD14716-PA 320..697 591..971 446 29.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11295-PA 916 GJ11295-PA 93..916 174..973 3154 74.8 Plus
Dvir\GJ12148-PA 1053 GJ12148-PA 617..1053 520..973 702 34.1 Plus
Dvir\GJ22930-PA 962 GJ22930-PA 607..959 620..970 473 32.3 Plus
Dvir\GJ21820-PA 1065 GJ21820-PA 707..1064 621..972 464 30.8 Plus
Dvir\GJ12273-PA 962 GJ12273-PA 582..959 591..971 450 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16632-PA 1064 GK16632-PA 1..1064 1..973 3402 67.5 Plus
Dwil\GK20388-PA 1054 GK20388-PA 620..1054 522..973 724 36.2 Plus
Dwil\GK22640-PA 1261 GK22640-PA 520..849 626..958 686 40.2 Plus
Dwil\GK15043-PA 970 GK15043-PA 615..967 620..970 474 32.3 Plus
Dwil\GK10721-PA 1099 GK10721-PA 741..1098 621..972 465 30.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20227-PA 987 GE20227-PA 1..987 1..973 4477 89.8 Plus
Dyak\GE21143-PA 1057 GE21143-PA 630..1057 529..973 716 36.2 Plus
Dyak\GE17900-PA 950 GE17900-PA 595..947 620..970 472 32.3 Plus
Dyak\GE11881-PA 1058 GE11881-PA 700..1057 621..972 466 30.3 Plus
Dyak\GE19920-PA 1010 GE19920-PA 630..1006 591..970 448 29.7 Plus

LD21888.hyp Sequence

Translation from 322 to 3243

> LD21888.hyp
MNGGGGGEDDQHLPGVSSASGSAAGAVGGRATPEMKRSAVRSLIKRYFHQ
LQSGCGNANCSNANCASSGKVAPMTPNEVAARALQLFSQDAQLCEAFTSE
ANSPQDVDMLSPNDSSSSSSGSSTSTITSASTTTTTSRQSQSTPAAVVVP
VSSPYLTQSVPQLDIAGAEHSSGDSEPCTPTLAPVHSLDANSLIALYEQC
RAADSYDRICHAIGVVFSSVDRLGKSFIRSAEPAASSSLQELLANSPGAL
NKEQLRTLEGEHDKDEDSTQQVDEQSESAANATATAESVESEAEPEEEDD
DVCSSQSSDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQLSDWVIYM
RTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQ
ARLARIWAAHCSDQLHSLIAACQQQITLQVLLDEESMRENESIISVTKVL
KIVFYANILASELERPSCRVPLEDRTEAATASGSAAVEDDLFVYNSLLEP
HMPKFAEDQFEKELQVSAIDCRKPLIPLEEFYNEALSENIQMHHDYLSYK
TLAMESEIGSGHANYFSFMLYAFILTPSTKVDALYYDSRMRMYSERYSSL
HSILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIGLEMVAMSNPKDLKK
QLVVEFVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNA
TPFENGAQFTLIGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSD
WSPALYKSLKSMLDYQGQDMEEVFEQTFKISYSDVFGDVVQHELVPNGQD
VLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVTDESPLKLLFRP
EEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDK
HKLLEFTTGSARVPVGGLKCLRLLITRHGPDSDRLPTSHTCFNVLLLPEY
SSREKLEERLMKAINYSKGFGML*

LD21888.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ube3a-PA 973 CG6190-PA 1..973 1..973 4990 100 Plus
CG9153-PA 1058 CG9153-PA 587..1058 479..973 730 34.9 Plus
CG9153-PB 1058 CG9153-PB 587..1058 479..973 730 34.9 Plus
CG9153-PC 1062 CG9153-PC 592..1062 479..973 730 35.1 Plus
Su(dx)-PF 949 CG4244-PF 594..946 620..970 455 32.2 Plus