BDGP Sequence Production Resources |
Search the DGRC for LD21896
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 218 |
Well: | 96 |
Vector: | pOT2 |
Associated Gene/Transcript | wus-RA |
Protein status: | LD21896.pep: gold |
Preliminary Size: | 1919 |
Sequenced Size: | 1815 |
Gene | Date | Evidence |
---|---|---|
CG9089 | 2001-01-01 | Release 2 assignment |
CG9089 | 2001-09-19 | Blastp of sequenced clone |
CG9089 | 2003-01-01 | Sim4 clustering to Release 3 |
wus | 2008-04-29 | Release 5.5 accounting |
wus | 2008-08-15 | Release 5.9 accounting |
wus | 2008-12-18 | 5.12 accounting |
1815 bp (1815 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058516
> LD21896.complete AAACAACAAATTCGTATTGTTTCAAATTGTTTCAATTGCAATTTTAGTGA AACATAGCAACAACCAGTTCAAATTGAACGCATCAGTGCACTTGGTTTTC TTTTTTTTTTTTGTTTTTGTGGATCAGTTTGTCGTTTTTGTTCTTGTTGT CGCTGCGTGCGTAGAATTTGTGAAAAGAGAAAGTTCTGCGCCGCGTCTTT CTCCGCCTCTCTTTCTCCAATTCTTCGCACAGTCGTGGCCAAGAAGTTGC GCCTGCGCAGCGACAATTTCACAAGAAATCGAGGTCGATCGCAAGTGGTA ATCCGATTGGAACACCATGGGCACCACGCAGACAGTATCTCCAGTGGCTG GAAAGGATAAGACCAACGATACCTCCAAAGGATCTCCCTCGAAGGCTAAG TCCAATGGCCACGCGCAAGGCAAGACCAAAAGCAAGGAGATGAACGCTCT GCCGCCCCAGAAATCGGTGGTCATTGCCTATCTATGCTGGCTTTTCGGCG GAATCTTCGGCCTGCATCATCTGTACTTGCACCGTGACCGCCACGCCTTC ATTTGGTGGTGCACCCTGGGTGGCTACATGGGCATTGGCTGGATGGGCGA GCTCTTCCTGATACCCGAATATGTACGGGATGCCAACGAGGATCCCAAGT TCGTCAAGATGTTCGTGGCCAAGCTGCAGGCGTATCCGAAACCGCCGTAC TCCTCGAAGAGATTCGTGGGCCAGGTGATGATCGGCCATCTGTTCGGCCA GGTGTGCTCCATGGCCATTCCGGAGACCCTGGTCGGTGGCTGGGATCTGA GCTTCCTACACTGGACGATTCCGCTGTTTGTTTCGCTGGGCGTTTGGCTG GTGGGCAACATTGGCCGGGAGCAGGGTGTATGGTGGCACTGCCTGGTGGC CGCCTATCTGGCGTATCCGGCCAGGTATTTGATATATGACGAGACCTACT CCCTGCTGCTCACTGGTCTCGTGGCGGCACTGACCTTCGACGGCTTGTCC AAGCAGTGGCGCAGGACTCCGCCGCGCAGGGGAAGCCCCGGTGAAAGGAC CTTTAAGCTAACCACCGCCGTGATCATCTACTGCGCCTTCTGGGGCAGCT TCCTGTATTTCAACGGCACCATTTCGGACGAGGACGGCGGCGAGGTGCCC ATTCACGAGGCCATCCATAACTTCTTGGCCTCCGCCTGGTGGACAGATCT GAAGCAAGCCCTGCTGGACACCTATAACTATGCGCAGCATCACGGCTGGT ACGAGACCTGGAAGGAGGTGTTCGAAAGCATGGATGTGGATGGCGAACGA AATTCGTACAAGGTCTTGGGCGTAAGTGCCACCGCTTCGCAGGCAGAGAT CACCGCTGCGTACAGGAAGCTCTCCAAGGAGTACCATCCCGACAAGGTCA AGGACGAGGGCTTGCGGGCCCAGGCCCACCAGCGCTTTATCGAAATCCAG CAGGCGTACAGTGTGCTCAGCAAGATCAAGTCCAACCGGCGGCGCAAGAA CAAACAGTACCAGGAGGAGGAGGCCATCGTCCTTTGAGCGGCGCTTTCCT CCATCTAGTCTAAGTATTTATAACGACTAGGAAGTAAGATTCTTTAAATG CGATTACTTACTTAAAGCAATAGTACCTAAATGCTGCTATAGCACATATT GCGAATTCTCTAAATGTTATTCATATTAATTACCTAATGGTGTTTTTAGC TGTATCTGTTTCCACATGTATTTATTACCATAAATCTGCGTTGTTTATTG TCAAGACTGTGTTTAAAAATATTAAAGCACCCCAAAATTCATTCAAAAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
wus-RA | 2166 | wus-RA | 120..1917 | 1..1798 | 8990 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16828079..16829574 | 299..1794 | 100 | <- | Minus |
chrX | 16830087..16830236 | 149..298 | 100 | == | Minus |
chrX | 16830294..16830384 | 1..91 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 1..1221 | 317..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 1..1221 | 317..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 1..1221 | 317..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 1..1221 | 317..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 1..1221 | 317..1537 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 26..1818 | 1..1793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 26..1818 | 1..1793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 73..1866 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 26..1818 | 1..1793 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
wus-RA | 73..1866 | 1..1794 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16938496..16939991 | 299..1794 | 100 | <- | Minus |
X | 16940504..16940801 | 1..298 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16938496..16939991 | 299..1794 | 100 | <- | Minus |
X | 16940504..16940801 | 1..298 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16938496..16939991 | 299..1794 | 100 | <- | Minus |
X | 16940504..16940801 | 1..298 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16834537..16834834 | 1..298 | 100 | Minus | |
arm_X | 16832529..16834024 | 299..1794 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16946594..16948089 | 299..1794 | 100 | <- | Minus |
X | 16948602..16948899 | 1..298 | 100 | Minus |
Translation from 316 to 1536
> LD21896.pep MGTTQTVSPVAGKDKTNDTSKGSPSKAKSNGHAQGKTKSKEMNALPPQKS VVIAYLCWLFGGIFGLHHLYLHRDRHAFIWWCTLGGYMGIGWMGELFLIP EYVRDANEDPKFVKMFVAKLQAYPKPPYSSKRFVGQVMIGHLFGQVCSMA IPETLVGGWDLSFLHWTIPLFVSLGVWLVGNIGREQGVWWHCLVAAYLAY PARYLIYDETYSLLLTGLVAALTFDGLSKQWRRTPPRRGSPGERTFKLTT AVIIYCAFWGSFLYFNGTISDEDGGEVPIHEAIHNFLASAWWTDLKQALL DTYNYAQHHGWYETWKEVFESMDVDGERNSYKVLGVSATASQAEITAAYR KLSKEYHPDKVKDEGLRAQAHQRFIEIQQAYSVLSKIKSNRRRKNKQYQE EEAIVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21821-PA | 411 | GF21821-PA | 1..411 | 1..406 | 1822 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18215-PA | 406 | GG18215-PA | 1..406 | 1..406 | 2111 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24202-PA | 399 | GH24202-PA | 8..399 | 14..406 | 1397 | 65.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
wus-PB | 406 | CG9089-PB | 1..406 | 1..406 | 2196 | 100 | Plus |
wus-PA | 406 | CG9089-PA | 1..406 | 1..406 | 2196 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15224-PA | 448 | GI15224-PA | 49..448 | 8..406 | 1518 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22745-PA | 419 | GL22745-PA | 1..419 | 1..406 | 1746 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21533-PA | 419 | GA21533-PA | 1..419 | 1..406 | 1744 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13353-PA | 247 | GM13353-PA | 1..215 | 1..214 | 1039 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15712-PA | 85 | GD15712-PA | 1..85 | 322..406 | 445 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19321-PA | 405 | GJ19321-PA | 10..405 | 16..406 | 1551 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18527-PA | 421 | GK18527-PA | 1..421 | 1..406 | 1786 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15632-PA | 406 | GE15632-PA | 1..406 | 1..406 | 2103 | 95.3 | Plus |
Translation from 316 to 1536
> LD21896.hyp MGTTQTVSPVAGKDKTNDTSKGSPSKAKSNGHAQGKTKSKEMNALPPQKS VVIAYLCWLFGGIFGLHHLYLHRDRHAFIWWCTLGGYMGIGWMGELFLIP EYVRDANEDPKFVKMFVAKLQAYPKPPYSSKRFVGQVMIGHLFGQVCSMA IPETLVGGWDLSFLHWTIPLFVSLGVWLVGNIGREQGVWWHCLVAAYLAY PARYLIYDETYSLLLTGLVAALTFDGLSKQWRRTPPRRGSPGERTFKLTT AVIIYCAFWGSFLYFNGTISDEDGGEVPIHEAIHNFLASAWWTDLKQALL DTYNYAQHHGWYETWKEVFESMDVDGERNSYKVLGVSATASQAEITAAYR KLSKEYHPDKVKDEGLRAQAHQRFIEIQQAYSVLSKIKSNRRRKNKQYQE EEAIVL*