Clone LD21896 Report

Search the DGRC for LD21896

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:218
Well:96
Vector:pOT2
Associated Gene/Transcriptwus-RA
Protein status:LD21896.pep: gold
Preliminary Size:1919
Sequenced Size:1815

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9089 2001-01-01 Release 2 assignment
CG9089 2001-09-19 Blastp of sequenced clone
CG9089 2003-01-01 Sim4 clustering to Release 3
wus 2008-04-29 Release 5.5 accounting
wus 2008-08-15 Release 5.9 accounting
wus 2008-12-18 5.12 accounting

Clone Sequence Records

LD21896.complete Sequence

1815 bp (1815 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058516

> LD21896.complete
AAACAACAAATTCGTATTGTTTCAAATTGTTTCAATTGCAATTTTAGTGA
AACATAGCAACAACCAGTTCAAATTGAACGCATCAGTGCACTTGGTTTTC
TTTTTTTTTTTTGTTTTTGTGGATCAGTTTGTCGTTTTTGTTCTTGTTGT
CGCTGCGTGCGTAGAATTTGTGAAAAGAGAAAGTTCTGCGCCGCGTCTTT
CTCCGCCTCTCTTTCTCCAATTCTTCGCACAGTCGTGGCCAAGAAGTTGC
GCCTGCGCAGCGACAATTTCACAAGAAATCGAGGTCGATCGCAAGTGGTA
ATCCGATTGGAACACCATGGGCACCACGCAGACAGTATCTCCAGTGGCTG
GAAAGGATAAGACCAACGATACCTCCAAAGGATCTCCCTCGAAGGCTAAG
TCCAATGGCCACGCGCAAGGCAAGACCAAAAGCAAGGAGATGAACGCTCT
GCCGCCCCAGAAATCGGTGGTCATTGCCTATCTATGCTGGCTTTTCGGCG
GAATCTTCGGCCTGCATCATCTGTACTTGCACCGTGACCGCCACGCCTTC
ATTTGGTGGTGCACCCTGGGTGGCTACATGGGCATTGGCTGGATGGGCGA
GCTCTTCCTGATACCCGAATATGTACGGGATGCCAACGAGGATCCCAAGT
TCGTCAAGATGTTCGTGGCCAAGCTGCAGGCGTATCCGAAACCGCCGTAC
TCCTCGAAGAGATTCGTGGGCCAGGTGATGATCGGCCATCTGTTCGGCCA
GGTGTGCTCCATGGCCATTCCGGAGACCCTGGTCGGTGGCTGGGATCTGA
GCTTCCTACACTGGACGATTCCGCTGTTTGTTTCGCTGGGCGTTTGGCTG
GTGGGCAACATTGGCCGGGAGCAGGGTGTATGGTGGCACTGCCTGGTGGC
CGCCTATCTGGCGTATCCGGCCAGGTATTTGATATATGACGAGACCTACT
CCCTGCTGCTCACTGGTCTCGTGGCGGCACTGACCTTCGACGGCTTGTCC
AAGCAGTGGCGCAGGACTCCGCCGCGCAGGGGAAGCCCCGGTGAAAGGAC
CTTTAAGCTAACCACCGCCGTGATCATCTACTGCGCCTTCTGGGGCAGCT
TCCTGTATTTCAACGGCACCATTTCGGACGAGGACGGCGGCGAGGTGCCC
ATTCACGAGGCCATCCATAACTTCTTGGCCTCCGCCTGGTGGACAGATCT
GAAGCAAGCCCTGCTGGACACCTATAACTATGCGCAGCATCACGGCTGGT
ACGAGACCTGGAAGGAGGTGTTCGAAAGCATGGATGTGGATGGCGAACGA
AATTCGTACAAGGTCTTGGGCGTAAGTGCCACCGCTTCGCAGGCAGAGAT
CACCGCTGCGTACAGGAAGCTCTCCAAGGAGTACCATCCCGACAAGGTCA
AGGACGAGGGCTTGCGGGCCCAGGCCCACCAGCGCTTTATCGAAATCCAG
CAGGCGTACAGTGTGCTCAGCAAGATCAAGTCCAACCGGCGGCGCAAGAA
CAAACAGTACCAGGAGGAGGAGGCCATCGTCCTTTGAGCGGCGCTTTCCT
CCATCTAGTCTAAGTATTTATAACGACTAGGAAGTAAGATTCTTTAAATG
CGATTACTTACTTAAAGCAATAGTACCTAAATGCTGCTATAGCACATATT
GCGAATTCTCTAAATGTTATTCATATTAATTACCTAATGGTGTTTTTAGC
TGTATCTGTTTCCACATGTATTTATTACCATAAATCTGCGTTGTTTATTG
TCAAGACTGTGTTTAAAAATATTAAAGCACCCCAAAATTCATTCAAAAAA
AAAAAAAAAAAAAAA

LD21896.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
wus-RA 2166 wus-RA 120..1917 1..1798 8990 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16828079..16829575 1794..298 7485 100 Minus
chrX 22417052 chrX 16830087..16830384 298..1 1490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16938492..16939992 1798..298 7505 100 Minus
X 23542271 X 16940504..16940801 298..1 1490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16946590..16948090 1798..298 7505 100 Minus
X 23527363 X 16948602..16948899 298..1 1490 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:29:33 has no hits.

LD21896.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:30:24 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16828079..16829574 299..1794 100 <- Minus
chrX 16830087..16830236 149..298 100 == Minus
chrX 16830294..16830384 1..91 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:34 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 1..1221 317..1537 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:57 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 1..1221 317..1537 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:49:36 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 1..1221 317..1537 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:34 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 1..1221 317..1537 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:31 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 1..1221 317..1537 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:46 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 26..1818 1..1793 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:56 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 26..1818 1..1793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:49:36 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 73..1866 1..1794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:35 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 26..1818 1..1793 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:31 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
wus-RA 73..1866 1..1794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:24 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
X 16938496..16939991 299..1794 100 <- Minus
X 16940504..16940801 1..298 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:24 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
X 16938496..16939991 299..1794 100 <- Minus
X 16940504..16940801 1..298 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:24 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
X 16938496..16939991 299..1794 100 <- Minus
X 16940504..16940801 1..298 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:49:36 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16834537..16834834 1..298 100   Minus
arm_X 16832529..16834024 299..1794 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:28 Download gff for LD21896.complete
Subject Subject Range Query Range Percent Splice Strand
X 16946594..16948089 299..1794 100 <- Minus
X 16948602..16948899 1..298 100   Minus

LD21896.pep Sequence

Translation from 316 to 1536

> LD21896.pep
MGTTQTVSPVAGKDKTNDTSKGSPSKAKSNGHAQGKTKSKEMNALPPQKS
VVIAYLCWLFGGIFGLHHLYLHRDRHAFIWWCTLGGYMGIGWMGELFLIP
EYVRDANEDPKFVKMFVAKLQAYPKPPYSSKRFVGQVMIGHLFGQVCSMA
IPETLVGGWDLSFLHWTIPLFVSLGVWLVGNIGREQGVWWHCLVAAYLAY
PARYLIYDETYSLLLTGLVAALTFDGLSKQWRRTPPRRGSPGERTFKLTT
AVIIYCAFWGSFLYFNGTISDEDGGEVPIHEAIHNFLASAWWTDLKQALL
DTYNYAQHHGWYETWKEVFESMDVDGERNSYKVLGVSATASQAEITAAYR
KLSKEYHPDKVKDEGLRAQAHQRFIEIQQAYSVLSKIKSNRRRKNKQYQE
EEAIVL*

LD21896.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21821-PA 411 GF21821-PA 1..411 1..406 1822 82.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18215-PA 406 GG18215-PA 1..406 1..406 2111 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24202-PA 399 GH24202-PA 8..399 14..406 1397 65.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
wus-PB 406 CG9089-PB 1..406 1..406 2196 100 Plus
wus-PA 406 CG9089-PA 1..406 1..406 2196 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15224-PA 448 GI15224-PA 49..448 8..406 1518 69.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22745-PA 419 GL22745-PA 1..419 1..406 1746 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21533-PA 419 GA21533-PA 1..419 1..406 1744 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13353-PA 247 GM13353-PA 1..215 1..214 1039 91.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15712-PA 85 GD15712-PA 1..85 322..406 445 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19321-PA 405 GJ19321-PA 10..405 16..406 1551 74 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18527-PA 421 GK18527-PA 1..421 1..406 1786 77.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15632-PA 406 GE15632-PA 1..406 1..406 2103 95.3 Plus

LD21896.hyp Sequence

Translation from 316 to 1536

> LD21896.hyp
MGTTQTVSPVAGKDKTNDTSKGSPSKAKSNGHAQGKTKSKEMNALPPQKS
VVIAYLCWLFGGIFGLHHLYLHRDRHAFIWWCTLGGYMGIGWMGELFLIP
EYVRDANEDPKFVKMFVAKLQAYPKPPYSSKRFVGQVMIGHLFGQVCSMA
IPETLVGGWDLSFLHWTIPLFVSLGVWLVGNIGREQGVWWHCLVAAYLAY
PARYLIYDETYSLLLTGLVAALTFDGLSKQWRRTPPRRGSPGERTFKLTT
AVIIYCAFWGSFLYFNGTISDEDGGEVPIHEAIHNFLASAWWTDLKQALL
DTYNYAQHHGWYETWKEVFESMDVDGERNSYKVLGVSATASQAEITAAYR
KLSKEYHPDKVKDEGLRAQAHQRFIEIQQAYSVLSKIKSNRRRKNKQYQE
EEAIVL*

LD21896.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
wus-PB 406 CG9089-PB 1..406 1..406 2196 100 Plus
wus-PA 406 CG9089-PA 1..406 1..406 2196 100 Plus