Clone LD21924 Report

Search the DGRC for LD21924

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:219
Well:24
Vector:pOT2
Associated Gene/TranscriptCG9300-RA
Protein status:LD21924.pep: gold
Preliminary Size:2194
Sequenced Size:2142

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9300 2001-01-01 Release 2 assignment
CG9300 2001-09-19 Blastp of sequenced clone
CG9300 2003-01-01 Sim4 clustering to Release 3
CG9300 2008-04-29 Release 5.5 accounting
CG9300 2008-08-15 Release 5.9 accounting
CG9300 2008-12-18 5.12 accounting

Clone Sequence Records

LD21924.complete Sequence

2142 bp (2142 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058517

> LD21924.complete
TTTTCAATTCAATTAAATAATGTCCAAATTCCTGTCCTACTACAACCTGT
TTCCCATCCCCGACCCCAAGGAGTTTCTGGGCCTAGCTGCAGACAGGGAA
AATGGCAATGTGGTGACTACGTTGGCGCGCAACGTGGTGGTTGTTTTGAA
CATCAGCACACAAAAGCAGTTGCTCAGTTGGTCCCTGCCGGAGAAGCTTT
CCTCCAAGGTTATATACGATCCCAGCAGCCAGAAGTATGTGGGCGTCTTT
GGAAATCACGCGCTGCGTCTTTGGGATGTGGACACCAGTGATGTGTCCAA
GTGCAAGAAGCTGAAGTTTCAGAAAAGCATCGCTCACGTGGTGGCAACCG
AACAGGAGGCATTAATCCTCTACAGCGATGGCGAGTGCCAAACCCTTTCC
CAGGCATTGGCTTCGAGAAAGGACCAGAAGGAGGATACGGCTGAGCAACT
GGCCCTAGCCGCCAGCAAGGTCATCAGCAAGCCCACAGTCCACGCATTGG
CCCAGGGCCAGCAGGTGCTCACATATTTCGAGGAAACAAAGGCCACCGGC
GAAATGCAGCTTATCCGCCTCTCCCTGGACACGGCTGACCGGCGGAAGTA
CCTCATTAAGCGGGAAGAGGTTCGCCTCACGGGATATGCTGTCGTCGAGG
GCGATGCAGATCCTCAGTTGCTGACCATTTGGTCTGATAAACGCATCTTC
ATGCTTAACCTGGCGGAGGCCACATCAGAGCGATCCCCTGGACAATTCGT
ATCTATGCTGGCCGAGCTGAATGTGGAGAGCAAGCTATCCGTGCACGGAG
TCTCACGAAACTTTGCTGCCATCTACGGCGCCAACTATGGGCAGGAAGGC
GCCTCTCTGTTGGTTTATAACACTCAGTTTAAGGTGGTGAACGCGAAGCA
GTACTTTAAAGTGTACCTGGACTTCTCTCGCCTTTGGGCCGGGAATGAGC
ACATCCTTTTGGCCATGGGGCATAATATAGCGGCGGTCCGTTACCGAATG
AACCGGGAGGTGCTGGTGGACATGTTGGGCTCTCAGTTTAGTGATACTCA
CCTCTCGCCTATTGAATTGGATCACATAAACGAGGAGGAGTATCTGGAGT
CGCTTATTAAGTTTGATGGTAGTACGAAACCCTTAAATTATAGAGCTGTG
AAATCCCAGTTAAATAAGCAGATGCCCAACTTGGACTACCAAAAAGCTGA
TGGCCGGGAGTTGGCTTACGATCCTCCCGAGGTAGTGGATCAAGAGATCG
ACGAAATTATCAAACAGCATGTTCATGGAGAGGCGACCATTTGCGAGAAT
GGGCTGGAGGACGTGAGTGTCACTCTAATGACGAACTTCTTTGACAAGGG
GCCGAATAATACAGCTGTGCAGGCTTTAGTCCGGCAGCTGGAGAGAAGTG
GAGCTGGGGAAGAGGAAATCATCGAAAGGATTCTCACACTTTTCATCAAG
ACCGACAACACAGAGCATGTCCTGATGTGTCTTAGGCGCTACAGCAACAT
ATCGGAGAGAATGCTGGCCTGGTCACTGCGCTATGCTCTAGATAAATGCA
AGCCTCGTCATGCTATTAATGGCGATTCCAACGCTGTACCAACGGCTAAG
AGTTACTCCAACAAGGAACTGCTAAATGCAGTGCTAGCCTGCAGATTTGA
TGCCACCGGCATCGAGGAGCATCTGCGTTACCGACTGGAGCTCTCCCATG
TCCAGCACTTGATGAGCCACCTGTTCGATCTGGTCAATGACCCCAATGTC
CAGTTGGAGGAACGACCCAGCCTGAATTGCTCGCCAATTCAAACGGAAGT
ACAGGCCATCCAGTGGTTTGGCTGCATCTTGACCTCCCATTTCACCCTGC
TGATTATTTCCAAGGACGAGGCATTGCTCGAGACTCTCTCCGAATGGGCC
ACTTTCCTCTCCTTCTACGAAGAAAGTTTATTCGATTTAGCCAATTTGCT
GCCGCTGCTCACAAATATTGTGGAGAAACGTCAGGTGAAACCGATGTACT
CTACAAATTGGTATGGGATTGAGGAGGTGGTGCTCTACTAGAAAAATAAT
AAAGGTCTTTAGTGTTTCCTTAAGTTTGTTTTTTACTGAATAAGCCAAAT
AAACCTAGAATTAACTTTTAAAAAAAAAAAAAAAAAAAAAAA

LD21924.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2253 CG9300-RA 104..2223 1..2120 10600 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19542705..19544143 681..2119 7135 99.7 Plus
chr3L 24539361 chr3L 19542259..19542625 315..681 1820 99.7 Plus
chr3L 24539361 chr3L 19542042..19542206 152..316 825 100 Plus
chr3L 24539361 chr3L 19541833..19541983 1..151 755 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19553329..19554768 681..2120 7200 100 Plus
3L 28110227 3L 19552883..19553249 315..681 1835 100 Plus
3L 28110227 3L 19552666..19552830 152..316 825 100 Plus
3L 28110227 3L 19552457..19552607 1..151 755 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19546429..19547868 681..2120 7200 100 Plus
3L 28103327 3L 19545983..19546349 315..681 1835 100 Plus
3L 28103327 3L 19545766..19545930 152..316 825 100 Plus
3L 28103327 3L 19545557..19545707 1..151 755 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:29:43 has no hits.

LD21924.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:30:30 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19541833..19541983 1..151 100 -> Plus
chr3L 19542042..19542206 152..316 100 -> Plus
chr3L 19542261..19542624 317..680 99 -> Plus
chr3L 19542705..19544143 681..2119 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:38 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1..2022 20..2041 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:58 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1..2022 20..2041 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:50:16 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1..2022 20..2041 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:36 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1..2022 20..2041 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:47 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1..2022 20..2041 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:47 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 36..2154 1..2119 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:58 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 36..2154 1..2119 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:50:16 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 38..2156 1..2119 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:36 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 36..2154 1..2119 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:47 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 38..2156 1..2119 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:30 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19552457..19552607 1..151 100 -> Plus
3L 19552666..19552830 152..316 100 -> Plus
3L 19552885..19553248 317..680 100 -> Plus
3L 19553329..19554767 681..2119 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:30 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19552457..19552607 1..151 100 -> Plus
3L 19552666..19552830 152..316 100 -> Plus
3L 19552885..19553248 317..680 100 -> Plus
3L 19553329..19554767 681..2119 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:30 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19552457..19552607 1..151 100 -> Plus
3L 19552666..19552830 152..316 100 -> Plus
3L 19552885..19553248 317..680 100 -> Plus
3L 19553329..19554767 681..2119 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:50:16 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19545557..19545707 1..151 100 -> Plus
arm_3L 19545766..19545930 152..316 100 -> Plus
arm_3L 19545985..19546348 317..680 100 -> Plus
arm_3L 19546429..19547867 681..2119 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:29 Download gff for LD21924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19545557..19545707 1..151 100 -> Plus
3L 19545766..19545930 152..316 100 -> Plus
3L 19545985..19546348 317..680 100 -> Plus
3L 19546429..19547867 681..2119 100   Plus

LD21924.pep Sequence

Translation from 19 to 2040

> LD21924.pep
MSKFLSYYNLFPIPDPKEFLGLAADRENGNVVTTLARNVVVVLNISTQKQ
LLSWSLPEKLSSKVIYDPSSQKYVGVFGNHALRLWDVDTSDVSKCKKLKF
QKSIAHVVATEQEALILYSDGECQTLSQALASRKDQKEDTAEQLALAASK
VISKPTVHALAQGQQVLTYFEETKATGEMQLIRLSLDTADRRKYLIKREE
VRLTGYAVVEGDADPQLLTIWSDKRIFMLNLAEATSERSPGQFVSMLAEL
NVESKLSVHGVSRNFAAIYGANYGQEGASLLVYNTQFKVVNAKQYFKVYL
DFSRLWAGNEHILLAMGHNIAAVRYRMNREVLVDMLGSQFSDTHLSPIEL
DHINEEEYLESLIKFDGSTKPLNYRAVKSQLNKQMPNLDYQKADGRELAY
DPPEVVDQEIDEIIKQHVHGEATICENGLEDVSVTLMTNFFDKGPNNTAV
QALVRQLERSGAGEEEIIERILTLFIKTDNTEHVLMCLRRYSNISERMLA
WSLRYALDKCKPRHAINGDSNAVPTAKSYSNKELLNAVLACRFDATGIEE
HLRYRLELSHVQHLMSHLFDLVNDPNVQLEERPSLNCSPIQTEVQAIQWF
GCILTSHFTLLIISKDEALLETLSEWATFLSFYEESLFDLANLLPLLTNI
VEKRQVKPMYSTNWYGIEEVVLY*

LD21924.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23706-PA 673 GF23706-PA 1..673 1..673 2929 80.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16044-PA 673 GG16044-PA 1..673 1..673 3446 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17182-PA 675 GH17182-PA 1..675 1..673 2443 68.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-PA 673 CG9300-PA 1..673 1..673 3442 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11795-PA 677 GI11795-PA 1..677 1..673 2437 67.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20941-PA 674 GL20941-PA 1..674 1..673 2723 75.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21682-PA 674 GA21682-PA 1..674 1..673 2723 75.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19592-PA 692 GM19592-PA 1..692 1..673 3271 89.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14812-PA 673 GD14812-PA 1..673 1..673 3361 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13498-PA 674 GJ13498-PA 1..674 1..673 2476 68.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20236-PA 653 GK20236-PA 1..653 1..673 2446 67.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23210-PA 673 GE23210-PA 1..673 1..673 3361 92.3 Plus
Dyak\GE19609-PA 149 GE19609-PA 2..149 526..673 703 86.5 Plus

LD21924.hyp Sequence

Translation from 19 to 2040

> LD21924.hyp
MSKFLSYYNLFPIPDPKEFLGLAADRENGNVVTTLARNVVVVLNISTQKQ
LLSWSLPEKLSSKVIYDPSSQKYVGVFGNHALRLWDVDTSDVSKCKKLKF
QKSIAHVVATEQEALILYSDGECQTLSQALASRKDQKEDTAEQLALAASK
VISKPTVHALAQGQQVLTYFEETKATGEMQLIRLSLDTADRRKYLIKREE
VRLTGYAVVEGDADPQLLTIWSDKRIFMLNLAEATSERSPGQFVSMLAEL
NVESKLSVHGVSRNFAAIYGANYGQEGASLLVYNTQFKVVNAKQYFKVYL
DFSRLWAGNEHILLAMGHNIAAVRYRMNREVLVDMLGSQFSDTHLSPIEL
DHINEEEYLESLIKFDGSTKPLNYRAVKSQLNKQMPNLDYQKADGRELAY
DPPEVVDQEIDEIIKQHVHGEATICENGLEDVSVTLMTNFFDKGPNNTAV
QALVRQLERSGAGEEEIIERILTLFIKTDNTEHVLMCLRRYSNISERMLA
WSLRYALDKCKPRHAINGDSNAVPTAKSYSNKELLNAVLACRFDATGIEE
HLRYRLELSHVQHLMSHLFDLVNDPNVQLEERPSLNCSPIQTEVQAIQWF
GCILTSHFTLLIISKDEALLETLSEWATFLSFYEESLFDLANLLPLLTNI
VEKRQVKPMYSTNWYGIEEVVLY*

LD21924.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-PA 673 CG9300-PA 1..673 1..673 3442 100 Plus