Clone LD21941 Report

Search the DGRC for LD21941

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:219
Well:41
Vector:pOT2
Associated Gene/TranscriptOst48-RA
Protein status:LD21941.pep: gold
Preliminary Size:1711
Sequenced Size:1508

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9022 2001-01-01 Release 2 assignment
CG9022 2003-01-01 Sim4 clustering to Release 3
CG9022 2003-04-25 Blastp of sequenced clone
Ost48 2008-04-29 Release 5.5 accounting
Ost48 2008-08-15 Release 5.9 accounting
Ost48 2008-12-18 5.12 accounting

Clone Sequence Records

LD21941.complete Sequence

1508 bp assembled on 2006-11-09

GenBank Submission: BT010050

> LD21941.complete
ACAGCCAGTCATTTTTTTTTCAAGAAAAGCCGGAGAGAATTTTGTGTTTT
AGTTGGATAAAATGATGTGGAAGGCTCTCCTGATCGCCGTTTTGGCGATT
GCCCACTGCCAGGCGGTACTGGAAACGGACGCCAACACCTTGGTTCTGCT
GGACAACCTGGCCATCCGGGAAACCCACTCGATCTTCTTCAAATCGCTGC
AGGATCGCGGATTTAAGCTCACCTACAAACTGGCGGATGACTCCAGCCTG
CTGCTGTCCAAATACGGTGAATATCTGTACAAGAACGTCATCATATTCGC
ACCAAGTGTCGAGGAATTCGGCGGCGATGTGAGCGTGGAGCGTTTGGCCC
AGTTCGTCGACGATGGCGGCAATGTTCTGGTGGCGGGCAGCGAGAAATCC
GGCGACGCGCTAAGGGAATTCGCCTCCGAGTGCGGCTTCGAGCTGGACGA
GGAGAATGCGGCGGTCATTGACCATCTGCACTACGATGTTAGCGATGCTG
GCGAGCACACAACCATCCTGACCTCCGCCAAGAATCTTATACAGGCCGAC
ACCATTGTGGGCAAGGCCAACAGGCAGGCGGATGCCGCACCGCTGCTCTA
TCGCGGTACAGGACTGATTGCCGACAAGGAGAACCCGCTGGTACTCAAGC
TGCTGACCGCCGAGAGCACCGCCTATAGCTACAATCCCGAGGCAAGTGTC
TCCGACTATCCGCATGCCGTTGGCCGAGGCACGCTGCTAATCGCCGCCCT
GCAGGCGAGGAACAATGCCCGCGTAGTGTTCTCCGGCTCGCTGCTCTTCT
TCTCTGACGAGAGCTTCACAACGGCCGTGCAGTACGCACAGAGCGGTGTG
TTCCACAAGCTGGCCGGTAATCGCGACGTGGCCGAGTCCATTAGCAAGTG
GGTATTTGGAGAGACTGGCCGCTTGCGCGTGGCATCCGTGCAACATCACA
AGGAGGGCGAGCTGCTGCCACCGGATCAGGCGTACACCATCACCGATCCG
GTCGTCTACACCATCGGCATCGAGGAGCTGGTGCAGGGCGAGTGGCGCGC
CTTTAAGGCCAGCGACATTCAACTGGAGTTCGTGCGCATCGATCCCTTCG
TCCGCACCTATCTGAAGCAAACGAACACGGGCGCCTACCAGGCCAAATTC
AAGATACCCGACGTCTACGGCGTTTATCAGTTCAAGGTGGACTACAATCG
CGTGGGCTACACGCATCTGTACAGCACCACCCAGGTGTCGGTGCGTCCGC
TGGAGCACACACAGTACGAGCGCTTTATCCCGAGCGCATTCCCCTACTAC
ACCAGCGCCTTCTCAATGATGATCGGCGTGTTTGTCTTCTCATTCGTGTT
CCTTCACTTCAAGGATGAGCCCGTGGGCAGGGCCGCCAAGGAGGACAAGA
AGTCGCAGTAGTATGCACGTTCGTTCAACTCAAATGTAACACACAATGCA
CTAAAATAAAGTTCTCTGCAGAGAGAAACCCACAATCCATAAAAAAAAAA
AAAAAAAA

LD21941.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ost48-RA 1576 Ost48-RA 65..1560 1..1494 7425 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9048729..9050016 1490..203 6410 99.8 Minus
chrX 22417052 chrX 9050090..9050281 203..12 960 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9156925..9158216 1494..203 6460 100 Minus
X 23542271 X 9158290..9158481 203..12 960 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9165023..9166314 1494..203 6460 100 Minus
X 23527363 X 9166388..9166592 203..1 970 99 Minus
Blast to na_te.dros performed on 2019-03-15 13:10:25 has no hits.

LD21941.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:11:21 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9048729..9050015 204..1490 99 <- Minus
chrX 9050090..9050294 1..203 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:40 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 1..1350 62..1411 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:19:39 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 1..1350 62..1411 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:58:48 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 1..1350 62..1411 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:35:57 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 1..1350 62..1411 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:23:51 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 1..1350 62..1411 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:48:01 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 18..1509 1..1490 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:19:39 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 18..1509 1..1490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:58:48 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 22..1513 1..1490 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:35:57 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 18..1509 1..1490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:23:51 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
Ost48-RA 22..1513 1..1490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:21 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
X 9156929..9158215 204..1490 100 <- Minus
X 9158290..9158494 1..203 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:21 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
X 9156929..9158215 204..1490 100 <- Minus
X 9158290..9158494 1..203 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:11:21 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
X 9156929..9158215 204..1490 100 <- Minus
X 9158290..9158494 1..203 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:58:48 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9050962..9052248 204..1490 100 <- Minus
arm_X 9052323..9052527 1..203 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:48:57 Download gff for LD21941.complete
Subject Subject Range Query Range Percent Splice Strand
X 9165027..9166313 204..1490 100 <- Minus
X 9166388..9166592 1..203 99   Minus

LD21941.pep Sequence

Translation from 61 to 1410

> LD21941.pep
MMWKALLIAVLAIAHCQAVLETDANTLVLLDNLAIRETHSIFFKSLQDRG
FKLTYKLADDSSLLLSKYGEYLYKNVIIFAPSVEEFGGDVSVERLAQFVD
DGGNVLVAGSEKSGDALREFASECGFELDEENAAVIDHLHYDVSDAGEHT
TILTSAKNLIQADTIVGKANRQADAAPLLYRGTGLIADKENPLVLKLLTA
ESTAYSYNPEASVSDYPHAVGRGTLLIAALQARNNARVVFSGSLLFFSDE
SFTTAVQYAQSGVFHKLAGNRDVAESISKWVFGETGRLRVASVQHHKEGE
LLPPDQAYTITDPVVYTIGIEELVQGEWRAFKASDIQLEFVRIDPFVRTY
LKQTNTGAYQAKFKIPDVYGVYQFKVDYNRVGYTHLYSTTQVSVRPLEHT
QYERFIPSAFPYYTSAFSMMIGVFVFSFVFLHFKDEPVGRAAKEDKKSQ*

LD21941.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19216-PA 449 GF19216-PA 1..449 1..449 2237 92 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18999-PA 449 GG18999-PA 1..449 1..449 2348 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11906-PA 449 GH11906-PA 1..449 2..449 2076 85.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ost48-PA 449 CG9022-PA 1..449 1..449 2294 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21480-PA 446 GI21480-PA 1..446 2..449 2098 87.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26830-PA 448 GL26830-PA 1..448 2..449 2180 90 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21484-PA 448 GA21484-PA 1..448 2..449 2195 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13675-PA 449 GM13675-PA 1..449 1..449 2366 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16081-PA 449 GD16081-PA 1..449 1..449 2382 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18511-PA 449 GJ18511-PA 1..449 2..449 2102 86 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25161-PA 450 GK25161-PA 1..450 2..449 2148 89.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17411-PA 449 GE17411-PA 1..449 1..449 2364 98.7 Plus

LD21941.hyp Sequence

Translation from 61 to 1410

> LD21941.hyp
MMWKALLIAVLAIAHCQAVLETDANTLVLLDNLAIRETHSIFFKSLQDRG
FKLTYKLADDSSLLLSKYGEYLYKNVIIFAPSVEEFGGDVSVERLAQFVD
DGGNVLVAGSEKSGDALREFASECGFELDEENAAVIDHLHYDVSDAGEHT
TILTSAKNLIQADTIVGKANRQADAAPLLYRGTGLIADKENPLVLKLLTA
ESTAYSYNPEASVSDYPHAVGRGTLLIAALQARNNARVVFSGSLLFFSDE
SFTTAVQYAQSGVFHKLAGNRDVAESISKWVFGETGRLRVASVQHHKEGE
LLPPDQAYTITDPVVYTIGIEELVQGEWRAFKASDIQLEFVRIDPFVRTY
LKQTNTGAYQAKFKIPDVYGVYQFKVDYNRVGYTHLYSTTQVSVRPLEHT
QYERFIPSAFPYYTSAFSMMIGVFVFSFVFLHFKDEPVGRAAKEDKKSQ*

LD21941.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ost48-PA 449 CG9022-PA 1..449 1..449 2294 100 Plus