Clone LD22010 Report

Search the DGRC for LD22010

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:220
Well:10
Vector:pOT2
Associated Gene/TranscriptCG11583-RA
Protein status:LD22010.pep: gold
Preliminary Size:1300
Sequenced Size:1254

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11583 2001-01-01 Release 2 assignment
CG32253 2002-05-16 Blastp of sequenced clone
CG32253 2003-01-01 Sim4 clustering to Release 3
CG11583 2008-04-29 Release 5.5 accounting
CG11583 2008-08-15 Release 5.9 accounting
CG11583 2008-12-18 5.12 accounting

Clone Sequence Records

LD22010.complete Sequence

1254 bp (1254 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118916

> LD22010.complete
CCTGGTTGTTGTCACTCCACGTTTTGCCTTCGCACTGTTCAATTGTTTTT
AATTATTTAAACTACAAAAAATGGGTCGCAAATTCCAGAATAAGAAAAAG
AAGGCCGCGCCGCAGCTGGAGATAGTGCCGCTGGATGAAAATCCACCACT
GCCGCCACAGAGATCGTCAGATGATGTGGTGCCCAAAAAGGAAAAATGGG
TGAACAAACAGCGCGTGCTGGTCTTCTCCGCCCGCGGTATTAGCCACCGG
GACCGGCACTTAATGAAGGATATTAAGACCCTAATGCCGCACCACCGACC
CGAATCCAAAATGGAGCGCTCCAAAACCTTGTCGGTGGTCAACGAAATGT
GCGAAATGAAGCACTGCAACAAGGCGATGCTGTTCGAGGGACGCCGGAAA
AGGGATCTGTACATGTGGATATCCAACACCTCGGGATCGACTGGTCCATC
CGCTAAATTCCTCATCGAAAACATTCATACAATGGCCGAACTGAAGATGA
CGGGAAACTGCTTGCGGGGATCACGTCCGCTGCTCTCGTTTGACTCCAAA
TTCGACGAGCTGCCGCACCTTAAGCTGCTCAAGGAGCTGTTCGTGCAGAC
CTACTCCGTGCCCAACCATCATCCCAAGAGCCAGCCCTTCGTCGATCACG
TTTTCACCTTCACCTACCTGGACAAACGCATCTGGTTCAGAAATTTCCAG
ATTCTATCCGAAGATGGCGGTTTGTCCGAAGTCGGGCCGCGTTACGTGAT
GAATCCTGTAAAAATATTCGATGGTTCCTTCACTGGCAAAACCATTTGGG
AGAATCCGGACTACGTGAGTCCATCCAAACAGCGGCAGGTACTTAAGAAG
GCTGCCAAGGATAAGTACGTGAACCGAGTGGAGCAAAAGGTCAAGCACGA
GGCCACGCGACCTATTAGAGCCTACGATGGCATGGATAACGATGAGCTAT
TCGAGGACGATGATCCCGTGGAGACGGCCAAGATACTGGCTGCGATAGCC
AAAAAGAAGAAGGAGGAAGCCGCCAAACAGACACCCAAATCGGCGCTGAC
CAAGAAGATCAAGGAGAAACAACTGCAGGCCGTGAAAGATGTGATTGAAA
GAAAGAAGGCAAGAACCATTAAACGCGTGAAAAAGGTTTAAACACCTCAT
TTTACATTAAGATACAAAAACGATTAAACTTTATAAATACGTTTACAAAC
TGTGCATCCTAAGTTTGAATATATCAATAGACAAGAAAAAAAAAAAAAAA
AAAA

LD22010.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11583-RA 1356 CG11583-RA 85..1320 1..1236 6180 100 Plus
CG1311.b 2495 CG1311.b 2380..2495 1236..1121 580 100 Minus
CG1311.a 2503 CG1311.a 2388..2503 1236..1121 580 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4280890..4281936 1235..189 5235 100 Minus
chr3L 24539361 chr3L 4281995..4282185 191..1 955 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4281503..4282550 1236..189 5240 100 Minus
3L 28110227 3L 4282609..4282799 191..1 955 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4281503..4282550 1236..189 5240 100 Minus
3L 28103327 3L 4282609..4282799 191..1 955 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:26:23 has no hits.

LD22010.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:27:12 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4280890..4281934 191..1235 100 <- Minus
chr3L 4281996..4282185 1..190 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:47 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 1..1071 71..1141 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:56 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 1..1071 71..1141 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:01:26 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 1..1071 71..1141 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:33 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 1..1071 71..1141 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:07 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 1..1071 71..1141 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:26 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 1..1234 2..1235 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:56 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 1..1234 2..1235 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:01:26 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 19..1253 1..1235 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:33 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 1..1234 2..1235 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:07 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 19..1253 1..1235 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:12 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4282610..4282799 1..190 100   Minus
3L 4281504..4282548 191..1235 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:12 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4282610..4282799 1..190 100   Minus
3L 4281504..4282548 191..1235 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:12 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4282610..4282799 1..190 100   Minus
3L 4281504..4282548 191..1235 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:01:26 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4281504..4282548 191..1235 100 <- Minus
arm_3L 4282610..4282799 1..190 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:50 Download gff for LD22010.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4281504..4282548 191..1235 100 <- Minus
3L 4282610..4282799 1..190 100   Minus

LD22010.pep Sequence

Translation from 70 to 1140

> LD22010.pep
MGRKFQNKKKKAAPQLEIVPLDENPPLPPQRSSDDVVPKKEKWVNKQRVL
VFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNEMCEMKHCN
KAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRG
SRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYL
DKRIWFRNFQILSEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVS
PSKQRQVLKKAAKDKYVNRVEQKVKHEATRPIRAYDGMDNDELFEDDDPV
ETAKILAAIAKKKKEEAAKQTPKSALTKKIKEKQLQAVKDVIERKKARTI
KRVKKV*

LD22010.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24741-PA 356 GF24741-PA 1..342 1..342 1684 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14198-PA 356 GG14198-PA 1..356 1..356 1888 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15536-PA 351 GH15536-PA 1..351 1..356 1573 83.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11583-PA 356 CG11583-PA 1..356 1..356 1861 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16813-PA 312 GI16813-PA 1..312 1..356 1312 73 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12724-PA 354 GL12724-PA 1..354 1..356 1710 87.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16790-PA 354 GA16790-PA 1..354 1..356 1713 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13988-PA 356 GM13988-PA 1..356 1..356 1899 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13269-PA 352 GD13269-PA 1..350 1..350 1829 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12560-PA 351 GJ12560-PA 1..351 1..356 1607 84 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10567-PA 353 GK10567-PA 1..351 1..355 1471 77.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20628-PA 364 GE20628-PA 1..364 1..356 1852 95.3 Plus

LD22010.hyp Sequence

Translation from 70 to 1140

> LD22010.hyp
MGRKFQNKKKKAAPQLEIVPLDENPPLPPQRSSDDVVPKKEKWVNKQRVL
VFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNEMCEMKHCN
KAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRG
SRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYL
DKRIWFRNFQILSEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVS
PSKQRQVLKKAAKDKYVNRVEQKVKHEATRPIRAYDGMDNDELFEDDDPV
ETAKILAAIAKKKKEEAAKQTPKSALTKKIKEKQLQAVKDVIERKKARTI
KRVKKV*

LD22010.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11583-PA 356 CG11583-PA 1..356 1..356 1861 100 Plus