Clone LD22033 Report

Search the DGRC for LD22033

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:220
Well:33
Vector:pOT2
Associated Gene/Transcriptana2-RA
Protein status:LD22033.pep: gold
Preliminary Size:1319
Sequenced Size:1420

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8262 2000-02-14 Blastp of sequenced clone
CG8262 2001-01-01 Release 2 assignment
CG8262 2003-01-01 Sim4 clustering to Release 3
ana2 2008-04-29 Release 5.5 accounting
ana2 2008-08-15 Release 5.9 accounting
ana2 2008-12-18 5.12 accounting

Clone Sequence Records

LD22033.complete Sequence

1420 bp (1420 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132189

> LD22033.complete
CAGATTCTCCCGCTCGAATTTAATTTAATCGGCAAATATAAACAAATACG
CTCCAAATGTTTGTTCCCGAAACGGAGGATATGCTGCCCAGACTAGCGCC
CAGGCCGAGTGCAGCAGTGCCCATGGGCCACACCAATGAGATTATAGGGC
CCACCGTGCCGGAGGTATCCATATTGTTTGGCCAGCCGCCGCAGGATCCG
CAGATGCAGCCGCAGCAGCCAAATCATGCACATCAGGAGTCATCCCCTCG
TGCTGCACCCACCTTCGCGTCCTGGAAGAAGCAAATGCTGCCCAGGGTCA
ACTTTTCGCCCATTTTGGCCACAGAACTGGGTCCTCGCACCGCTCCCAGC
AGCAATAGTCCGTGCTCCTCGAAGGAATACCAAGTAATGCCCCGGGATCG
CAACTATGCAAGCGATGCGCAGCAGACTACCAATCATATGAACTGCAATG
CTGGTGGCTATAATGCCGAGCCCAAGCAACAGGCATATCAATCTAGGCGC
TTGTCCAGCTCCTCCAACGCAGATGTCCTCACCATCTGTGCTGGCACACA
GACCGATCCCTTCAACCCATCTCCTCCGCGAAAATCACTGCCCCAGGTTG
TCTATTCCGACATCGACGTCAGCAACTTGGCCAATAAGAGTGATCTGGCG
GCTCTGGTATCCCTTGTGGAGTCCGTGCGCCATGAGCAGCAACAGCTTCG
GAATCTCTGCGAGATGATTTTGGAGCAACAGCAGCGAGCGAAACCCGAAG
CCATTTCAAAAGCCAGCAGTACCACTGGCACCCAGTGCGATATTCTGACC
ACCAATCAAGCAGGTAGACGCTTGTCTCCCATTATGCAGGATTACATAGC
AGAGGAGGAGGAACCATTGCCGCCGCCACAAGCACGAGTGATTCCTCAGT
TTCCGTCTCCTCGACCACATCCGCCGATCGCCCAATCTACGGGCTACCGG
GCCAATACGCCTCAGGCGAAGCGGATCCCTCAACTGGCCAAGCCCAACAC
CGAGAAGAGCATGGTGATGAACGAGCTGGCGCTGAAATACTTGCGCCAGC
CAGTGGATGAGTTGATGAAGGATATGCGCCTGGGGGCGTCGCCGAAGTCC
CCTAATCCAGAGCCACTGCGTCCGATCGACAACATAGGCCACGCGCAGAG
TCCAAACGACATATCCAATGCTTCGTACAAGTATCTCAAAAAATACCGTC
TGCTGCCCGAGGAGCAACTGGAGCCGGTGTGTCCACAATCTCCCATGGCG
GCGACCGCCCCTTCGCCACATATTCAACTGGACTTGGAGAATATCAGGAA
CCAGCCGAAGCTGTTGTGAAAGCATGTACAATGTTCGTTTTGTTATTTAT
GCATATGTCTATTTGCGATTTAAGTGGAAATATATTTCAATACACGGAAA
AAAAAAAAAAAAAAAAAAAA

LD22033.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
ana2-RA 1439 ana2-RA 37..1435 1..1399 6995 100 Plus
ana2.a 1436 ana2.a 37..1432 1..1399 6925 99.7 Plus
sec31-RA 4103 sec31-RA 4032..4103 1399..1328 360 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4786920..4787729 810..1 4050 100 Minus
chr2R 21145070 chr2R 4786282..4786870 1397..809 2945 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8899367..8900176 810..1 4050 100 Minus
2R 25286936 2R 8898727..8899317 1399..809 2955 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8900566..8901375 810..1 4050 100 Minus
2R 25260384 2R 8899926..8900516 1399..809 2955 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:27:36 has no hits.

LD22033.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:28:43 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4786282..4786868 811..1397 100 <- Minus
chr2R 4786920..4787729 1..810 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:48 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 1..1263 57..1319 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:03:48 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 1..1263 57..1319 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:01:33 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 1..1263 57..1319 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:04:28 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 1..1263 57..1319 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:52 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 1..1263 57..1319 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:29:28 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 26..1422 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:03:47 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 26..1422 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:01:33 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 36..1432 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:04:28 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 26..1422 1..1397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:52 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
ana2-RA 36..1432 1..1397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:43 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8898729..8899315 811..1397 100 <- Minus
2R 8899367..8900176 1..810 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:43 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8898729..8899315 811..1397 100 <- Minus
2R 8899367..8900176 1..810 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:43 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8898729..8899315 811..1397 100 <- Minus
2R 8899367..8900176 1..810 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:01:33 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4786234..4786820 811..1397 100 <- Minus
arm_2R 4786872..4787681 1..810 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:37:59 Download gff for LD22033.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8899928..8900514 811..1397 100 <- Minus
2R 8900566..8901375 1..810 100   Minus

LD22033.pep Sequence

Translation from 56 to 1318

> LD22033.pep
MFVPETEDMLPRLAPRPSAAVPMGHTNEIIGPTVPEVSILFGQPPQDPQM
QPQQPNHAHQESSPRAAPTFASWKKQMLPRVNFSPILATELGPRTAPSSN
SPCSSKEYQVMPRDRNYASDAQQTTNHMNCNAGGYNAEPKQQAYQSRRLS
SSSNADVLTICAGTQTDPFNPSPPRKSLPQVVYSDIDVSNLANKSDLAAL
VSLVESVRHEQQQLRNLCEMILEQQQRAKPEAISKASSTTGTQCDILTTN
QAGRRLSPIMQDYIAEEEEPLPPPQARVIPQFPSPRPHPPIAQSTGYRAN
TPQAKRIPQLAKPNTEKSMVMNELALKYLRQPVDELMKDMRLGASPKSPN
PEPLRPIDNIGHAQSPNDISNASYKYLKKYRLLPEEQLEPVCPQSPMAAT
APSPHIQLDLENIRNQPKLL*

LD22033.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12564-PA 427 GF12564-PA 1..427 1..420 1520 72.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10615-PA 416 GG10615-PA 1..416 1..420 1977 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22691-PA 420 GH22691-PA 1..420 1..420 819 48.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
ana2-PA 420 CG8262-PA 1..420 1..420 2200 100 Plus
ana2-PB 419 CG8262-PB 1..419 1..420 2184 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20618-PA 427 GI20618-PA 1..427 1..420 807 49.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17356-PA 429 GL17356-PA 1..402 1..389 1047 58.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20939-PA 441 GA20939-PA 1..441 1..420 1103 57 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20659-PA 419 GM20659-PA 1..419 1..420 1955 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10133-PA 265 GD10133-PA 20..265 176..420 987 83.9 Plus
Dsim\GD10132-PA 108 GD10132-PA 1..106 1..106 535 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21059-PA 444 GJ21059-PA 1..444 1..420 826 47.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20941-PA 444 GK20941-PA 1..444 1..420 858 49.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22763-PA 413 GE22763-PA 1..413 1..420 1951 90.7 Plus

LD22033.hyp Sequence

Translation from 56 to 1318

> LD22033.hyp
MFVPETEDMLPRLAPRPSAAVPMGHTNEIIGPTVPEVSILFGQPPQDPQM
QPQQPNHAHQESSPRAAPTFASWKKQMLPRVNFSPILATELGPRTAPSSN
SPCSSKEYQVMPRDRNYASDAQQTTNHMNCNAGGYNAEPKQQAYQSRRLS
SSSNADVLTICAGTQTDPFNPSPPRKSLPQVVYSDIDVSNLANKSDLAAL
VSLVESVRHEQQQLRNLCEMILEQQQRAKPEAISKASSTTGTQCDILTTN
QAGRRLSPIMQDYIAEEEEPLPPPQARVIPQFPSPRPHPPIAQSTGYRAN
TPQAKRIPQLAKPNTEKSMVMNELALKYLRQPVDELMKDMRLGASPKSPN
PEPLRPIDNIGHAQSPNDISNASYKYLKKYRLLPEEQLEPVCPQSPMAAT
APSPHIQLDLENIRNQPKLL*

LD22033.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
ana2-PA 420 CG8262-PA 1..420 1..420 2200 100 Plus
ana2-PB 419 CG8262-PB 1..419 1..420 2184 99.8 Plus