Clone LD22034 Report

Search the DGRC for LD22034

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:220
Well:34
Vector:pOT2
Associated Gene/TranscriptGILT2-RA
Protein status:LD22034.pep: gold
Preliminary Size:722
Sequenced Size:743

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10157 2001-01-01 Release 2 assignment
CG10157 2002-04-09 Blastp of sequenced clone
CG10157 2003-01-01 Sim4 clustering to Release 3
CG10157 2008-04-29 Release 5.5 accounting
CG10157 2008-08-15 Release 5.9 accounting
CG10157 2008-12-18 5.12 accounting

Clone Sequence Records

LD22034.complete Sequence

743 bp (743 high quality bases) assembled on 2002-04-09

GenBank Submission: AY095188

> LD22034.complete
CTGGCGTTGAGCGGCCGAATATTTCAAGATCAGCTCGGGATTAAACTGAA
TTTGCCATGAGGGCGGCTGTCTTTGTGTGTCTGCTGCTGGGATGGGTGGG
CGTGGCCACGCCAAGGCGTTTGCGCGGACCGCAAGCTGACCGACTGGCGA
TCACCCTGTACTACGAAGCATTGTGTCCCTACTGCATGGAGTTCGTGACC
ACGCAGCTCAATCCCTCGATGGTCCGTCAGGATCGACTTCCATTCACTGA
TCTTACGCTGGTTCCTTATGGAAATGCCAGGACGAACGATGACGGAAATG
TGGAGTGCCAGCACGGAGTGATGGAGTGCGAATTGAACGCGTGGCACGCC
TGCATACTGGAGCACCATGACATTGCCCAATCCCTCAAGCTGATCGCCTG
CATGATGAGGGGTAAGAAGAACAGGCTGGAAAAGTGCGCTGACCACTATC
AAATCGACGTGGGCGATGTCAAAAATTGCAAGAAAACGCGACAGGTGAAC
GACATTCTGAGGAAGTACGGCAAGGAAACGGCCAAGGTCTCATTTCAGGG
AGTGCCAGCCGTAGCTCTGGATAACGTTTATAACGCGGATCTATCAGCAA
ACTTAACTGATCATTTTGATGCCATTTTTTGCGCCAAGTATAAGGAAAAG
TTCAATAAGCAGCTAAATAATTGTCAATAAATATTGTGTTCATTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD22034.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10157-RA 826 CG10157-RA 66..762 1..697 3485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19502789..19503085 281..577 1485 100 Plus
chr3R 27901430 chr3R 19502499..19502664 116..281 830 100 Plus
chr3R 27901430 chr3R 19503138..19503261 572..695 605 99.2 Plus
chr3R 27901430 chr3R 19502318..19502433 1..116 580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23679383..23679679 281..577 1485 100 Plus
3R 32079331 3R 23679093..23679258 116..281 830 100 Plus
3R 32079331 3R 23679732..23679857 572..697 615 99.2 Plus
3R 32079331 3R 23678912..23679027 1..116 580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23420214..23420510 281..577 1485 100 Plus
3R 31820162 3R 23419924..23420089 116..281 830 100 Plus
3R 31820162 3R 23420563..23420688 572..697 615 99.2 Plus
3R 31820162 3R 23419743..23419858 1..116 580 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:23:27 has no hits.

LD22034.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:24:18 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19502318..19502433 1..116 100 -> Plus
chr3R 19502500..19502664 117..281 100 -> Plus
chr3R 19502790..19503083 282..575 100 -> Plus
chr3R 19503142..19503261 576..695 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:49 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 1..624 57..680 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:11:30 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 1..624 57..680 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:08 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 1..624 57..680 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:16 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 1..624 57..680 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:49 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
GILT2-RA 1..624 57..680 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:45:03 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 22..716 1..695 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:11:30 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 21..715 1..695 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:08 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 18..712 1..695 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:17 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 22..716 1..695 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:49 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
GILT2-RA 18..712 1..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:18 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23678912..23679027 1..116 100 -> Plus
3R 23679094..23679258 117..281 100 -> Plus
3R 23679384..23679677 282..575 100 -> Plus
3R 23679736..23679855 576..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:18 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23678912..23679027 1..116 100 -> Plus
3R 23679094..23679258 117..281 100 -> Plus
3R 23679384..23679677 282..575 100 -> Plus
3R 23679736..23679855 576..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:18 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23678912..23679027 1..116 100 -> Plus
3R 23679094..23679258 117..281 100 -> Plus
3R 23679384..23679677 282..575 100 -> Plus
3R 23679736..23679855 576..695 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:08 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19504634..19504749 1..116 100 -> Plus
arm_3R 19504816..19504980 117..281 100 -> Plus
arm_3R 19505106..19505399 282..575 100 -> Plus
arm_3R 19505458..19505577 576..695 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:42 Download gff for LD22034.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23420215..23420508 282..575 100 -> Plus
3R 23420567..23420686 576..695 100   Plus
3R 23419743..23419858 1..116 100 -> Plus
3R 23419925..23420089 117..281 100 -> Plus

LD22034.hyp Sequence

Translation from 56 to 679

> LD22034.hyp
MRAAVFVCLLLGWVGVATPRRLRGPQADRLAITLYYEALCPYCMEFVTTQ
LNPSMVRQDRLPFTDLTLVPYGNARTNDDGNVECQHGVMECELNAWHACI
LEHHDIAQSLKLIACMMRGKKNRLEKCADHYQIDVGDVKNCKKTRQVNDI
LRKYGKETAKVSFQGVPAVALDNVYNADLSANLTDHFDAIFCAKYKEKFN
KQLNNCQ*

LD22034.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
GILT2-PA 207 CG10157-PA 1..207 1..207 1117 100 Plus
GILT3-PA 216 CG13822-PA 11..212 7..206 381 38.5 Plus
CG41378-PD 205 CG41378-PD 8..172 15..172 201 29.9 Plus
CG41378-PB 228 CG41378-PB 21..195 5..172 197 28.2 Plus
CG41378-PC 196 CG41378-PC 5..163 21..172 196 29.8 Plus

LD22034.pep Sequence

Translation from 56 to 679

> LD22034.pep
MRAAVFVCLLLGWVGVATPRRLRGPQADRLAITLYYEALCPYCMEFVTTQ
LNPSMVRQDRLPFTDLTLVPYGNARTNDDGNVECQHGVMECELNAWHACI
LEHHDIAQSLKLIACMMRGKKNRLEKCADHYQIDVGDVKNCKKTRQVNDI
LRKYGKETAKVSFQGVPAVALDNVYNADLSANLTDHFDAIFCAKYKEKFN
KQLNNCQ*

LD22034.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16249-PA 207 GF16249-PA 1..206 1..206 799 71.5 Plus
Dana\GF16248-PA 226 GF16248-PA 39..225 25..206 376 38.5 Plus
Dana\GF17838-PA 213 GF17838-PA 17..202 11..198 193 28.1 Plus
Dana\GF17383-PA 251 GF17383-PA 21..208 26..192 187 25.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11213-PA 207 GG11213-PA 1..207 1..207 1050 91.8 Plus
Dere\GG11212-PA 218 GG11212-PA 20..216 18..207 355 37.6 Plus
Dere\GG17054-PA 250 GG17054-PA 8..208 7..192 183 26.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14296-PA 193 GH14296-PA 16..193 29..206 646 65.2 Plus
Dgri\GH18523-PA 204 GH18523-PA 5..203 10..206 380 37.1 Plus
Dgri\GH19011-PA 208 GH19011-PA 28..208 26..207 193 29.7 Plus
Dgri\GH18545-PA 245 GH18545-PA 18..204 27..192 186 27.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
GILT2-PA 207 CG10157-PA 1..207 1..207 1117 100 Plus
GILT3-PA 216 CG13822-PA 11..212 7..206 381 38.5 Plus
CG41378-PD 205 CG41378-PD 8..172 15..172 201 29.9 Plus
CG41378-PB 228 CG41378-PB 21..195 5..172 197 28.2 Plus
CG41378-PC 196 CG41378-PC 5..163 21..172 196 29.8 Plus
CG9427-PA 213 CG9427-PA 11..202 5..198 176 26.8 Plus
GILT1-PA 250 CG9796-PA 8..192 7..176 175 27.6 Plus
CG9427-PB 212 CG9427-PB 33..201 29..198 157 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23191-PA 206 GI23191-PA 6..206 5..206 670 62.4 Plus
Dmoj\GI22060-PA 234 GI22060-PA 43..233 17..206 356 38.5 Plus
Dmoj\GI23244-PA 245 GI23244-PA 18..204 27..192 201 28.2 Plus
Dmoj\GI23067-PA 208 GI23067-PA 28..208 26..207 190 29.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13649-PA 210 GL13649-PA 1..209 1..206 739 61.7 Plus
Dper\GL13648-PA 224 GL13648-PA 11..223 11..206 379 35.7 Plus
Dper\GL23064-PA 250 GL23064-PA 8..208 7..192 200 29.3 Plus
Dper\GL22172-PA 217 GL22172-PA 30..206 19..198 185 28.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10118-PA 210 GA10118-PA 1..209 1..206 739 61.7 Plus
Dpse\GA12550-PA 214 GA12550-PA 11..213 11..206 388 37.4 Plus
Dpse\GA24052-PA 250 GA24052-PA 8..208 7..192 206 29.8 Plus
Dpse\GA22042-PA 250 GA22042-PA 8..208 7..192 206 29.8 Plus
Dpse\GA21779-PA 217 GA21779-PA 30..206 19..198 187 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26512-PA 208 GM26512-PA 4..208 3..207 1046 94.6 Plus
Dsec\GM26511-PA 216 GM26511-PA 11..213 7..207 373 36.9 Plus
Dsec\GM25939-PA 250 GM25939-PA 21..208 26..192 186 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21021-PA 208 GD21021-PA 4..208 3..207 1082 97.6 Plus
Dsim\GD21020-PA 172 GD21020-PA 1..169 44..207 306 36.7 Plus
Dsim\GD20500-PA 250 GD20500-PA 21..192 26..176 180 27.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14507-PA 204 GJ14507-PA 5..192 20..207 692 66 Plus
Dvir\GJ24109-PA 230 GJ24109-PA 43..229 25..206 365 38.5 Plus
Dvir\GJ24579-PA 209 GJ24579-PA 10..209 5..207 200 29.6 Plus
Dvir\GJ10741-PA 244 GJ10741-PA 18..204 27..192 192 27.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13875-PA 209 GK13875-PA 26..209 23..206 701 67.4 Plus
Dwil\GK13874-PA 223 GK13874-PA 31..221 21..206 353 36.6 Plus
Dwil\GK13347-PA 232 GK13347-PA 21..207 27..192 191 26.6 Plus
Dwil\GK11854-PA 217 GK11854-PA 5..206 1..198 176 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10377-PA 207 GE10377-PA 1..206 1..206 950 82.5 Plus
Dyak\GE10376-PA 472 GE10376-PA 336..472 70..206 289 40.1 Plus
Dyak\GE24442-PA 250 GE24442-PA 22..208 27..192 181 26.6 Plus