BDGP Sequence Production Resources |
Search the DGRC for LD22082
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 220 |
Well: | 82 |
Vector: | pOT2 |
Associated Gene/Transcript | Snx6-RA |
Protein status: | LD22082.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1803 |
Gene | Date | Evidence |
---|---|---|
CG8282 | 2001-01-01 | Release 2 assignment |
CG8282 | 2001-11-12 | Blastp of sequenced clone |
CG8282 | 2003-01-01 | Sim4 clustering to Release 3 |
Snx6 | 2008-04-29 | Release 5.5 accounting |
Snx6 | 2008-08-15 | Release 5.9 accounting |
Snx6 | 2008-12-18 | 5.12 accounting |
1803 bp (1803 high quality bases) assembled on 2001-11-12
GenBank Submission: AY069492
> LD22082.complete CCACCTCTAGTTGAAATTCGCTCTCTGTAATTTGTAATAAAAACTTGTTT TTAGCCAAATCATTTGTTATTTACTTGGCCGCAAGATGATGGACGGCACG GATGACTCAAATCTGCTTAACAGCCCCTCCACCAACAATGGAGCCACAAT GGAAATCGCCTCGCCAACAAATCCACTTGCCACTCCACCAGCAACAGGCG GTGCACCCGCACCAAGTGGAGCCACAAATGGCAGTGGATCCGCCACATCG CCGGATAGCTCCTCCTCAGCCCCGGCCACGCCGGCAGTTCTAGGCGAGAA CGCCCTGCATGTCGAGATCTCCGATGCGCTCAGCGAAAAGGAGAAGGTCA AGTTCACAGTGCACACCCGCACCACACTGCCGGGATTCTCAAAAAAGGAC AATAACGTAGTGCGTCAGCACGAGGAGTTCGTCTGGCTACATGACCGTAT TGAGGAGAACGACGACTATGCTGGCTACATTATTCCGCCCTGTCCACCTC GTCCGGACTTCGATGCCTCCCGAGAGAAGCTGCAGCGTCTTGGCGAGGGC GAAGGCAACATGACCAAAGAGGAGTTCAAAAAGATGAAGTCAGAGCTGGA GGCTGAGTACCTAGCTACCTTCAAGAAGACGGTGGCCATGCACGAGGTTT TCCTGCGCCGCCTTGCTAGTCATCCCGTCTTTCGCGTCGATCAGCACTTG AAGGTTTTCCTGGAATACGACCAAGATCTGTGCGCTAAGCCACGCAAGAA GATGGCCATCTTTGGCGGCTTTGTCAAGTCCCTGGGCAAGACCACAGACG AGATCTTGTTGAGCGCCACGGTTCGGGATGTAAATGACTTCTTTGAGAAC GAGCTGCAGTTCCTTACCGAGTACCACGGCCACTTGCGCGAGGCAGCACT CAGGACGGAGAAAATGACGCAACGCCACAAGGATGTAGGCGACTCGCATC AGAAGATTTCGAATGCGTTGACGCAGCTCTCGACTACGGAAAAGGGAAAT GTGGAGACGTTTGTGGCCAAGACAGCGGAGATATTTGAAAGGATCAAGAA TCTGGAAACCCGAGTGGCTAGCGATCAAGATCTCAAGCTGGGCGACACTC TGCGCTACTATCAGCGGGATAGCGACGCTGCCAAAGCTCTACTTATCCGG CGACTGCGGTGTTTGGCTGCTTATGAAGCGGCCAATCGAAACCTGGAGAA GGCTCGCTCCAAAAACAAGGATGTTCATGCGGCCGAGACTGCCCAGGCGG AGGCCTGTGAAAAATTCGAATCTATGTCTGCATGTGGAAAGGAGGAGTTG ATCGGTTTCCGCAACCGACGGGTAGCTGCTTTCAAGAAGAGCCTCGTCGA GCTCTCAGAGCTGGAGATCAAGCATGCCAAGACGCAGTATGAATATCTGC GCCAATCACTGCTAGCGCTCAAAGAGATTGCCTGAGACGGGGAGCCGGAA GTAGACAAGGAATAGAAGGATGAGTCACCCGCACATTGTTTACACACCCC ATTGAAACGCAAGCCTCATCGATTACACACATCCGGGAGACGAAGTAAAT CAATTGTTTAATTGCTAAGCAAACAGTTTATTATTGCACAGGCCAAATCG AGTGCAACATTATTATCTTAGCCCACGTATTATATTAACGAATATTCATT TGTTTTGTGAACAGAGCGCTTTTATATTTGTCAAACAAGCATTCCTCTCT ACAGCATAAACTACAACTACATATATTGTAAACACTTGCATTTGAAGCAG AATATAAACGAGAAATATTGTACAGAAAAAAAAAAAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8218338..8218782 | 1048..604 | 2195 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 8217047..8217482 | 1775..1340 | 2165 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 8219021..8219411 | 481..91 | 1940 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 8218091..8218277 | 1232..1046 | 920 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 8218846..8218967 | 603..482 | 595 | 99.2 | Minus |
chr2L | 23010047 | chr2L | 8217546..8217656 | 1341..1231 | 555 | 100 | Minus |
chr2L | 23010047 | chr2L | 8219598..8219689 | 92..1 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8219362..8219806 | 1048..604 | 2225 | 100 | Minus |
2L | 23513712 | 2L | 8218069..8218506 | 1777..1340 | 2190 | 100 | Minus |
2L | 23513712 | 2L | 8220045..8220435 | 481..91 | 1955 | 100 | Minus |
2L | 23513712 | 2L | 8219115..8219301 | 1232..1046 | 935 | 100 | Minus |
2L | 23513712 | 2L | 8219870..8219991 | 603..482 | 610 | 100 | Minus |
2L | 23513712 | 2L | 8218570..8218680 | 1341..1231 | 555 | 100 | Minus |
2L | 23513712 | 2L | 8220622..8220713 | 92..1 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8219362..8219806 | 1048..604 | 2225 | 100 | Minus |
2L | 23513712 | 2L | 8218069..8218506 | 1777..1340 | 2190 | 100 | Minus |
2L | 23513712 | 2L | 8220045..8220435 | 481..91 | 1955 | 100 | Minus |
2L | 23513712 | 2L | 8219115..8219301 | 1232..1046 | 935 | 100 | Minus |
2L | 23513712 | 2L | 8219870..8219991 | 603..482 | 610 | 100 | Minus |
2L | 23513712 | 2L | 8218570..8218680 | 1341..1231 | 555 | 100 | Minus |
2L | 23513712 | 2L | 8220622..8220713 | 92..1 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 328..395 | 105..36 | 120 | 65.7 | Minus |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 6914..6981 | 105..36 | 120 | 65.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8217047..8217480 | 1342..1775 | 99 | <- | Minus |
chr2L | 8217546..8217655 | 1232..1341 | 100 | <- | Minus |
chr2L | 8218092..8218274 | 1049..1231 | 99 | <- | Minus |
chr2L | 8218338..8218782 | 604..1048 | 99 | <- | Minus |
chr2L | 8218846..8218967 | 482..603 | 99 | <- | Minus |
chr2L | 8219021..8219410 | 92..481 | 99 | <- | Minus |
chr2L | 8219599..8219689 | 1..91 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 1..1350 | 86..1435 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 1..1350 | 86..1435 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 1..1350 | 86..1435 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 1..1350 | 86..1435 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 1..1350 | 86..1435 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 25..1799 | 1..1775 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 25..1799 | 1..1775 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 29..1803 | 1..1775 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 25..1799 | 1..1775 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx6-RA | 29..1803 | 1..1775 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8219116..8219298 | 1049..1231 | 100 | <- | Minus |
2L | 8218071..8218504 | 1342..1775 | 100 | <- | Minus |
2L | 8218570..8218679 | 1232..1341 | 100 | <- | Minus |
2L | 8219362..8219806 | 604..1048 | 100 | <- | Minus |
2L | 8219870..8219991 | 482..603 | 100 | <- | Minus |
2L | 8220045..8220434 | 92..481 | 100 | <- | Minus |
2L | 8220623..8220713 | 1..91 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8219116..8219298 | 1049..1231 | 100 | <- | Minus |
2L | 8218071..8218504 | 1342..1775 | 100 | <- | Minus |
2L | 8218570..8218679 | 1232..1341 | 100 | <- | Minus |
2L | 8219362..8219806 | 604..1048 | 100 | <- | Minus |
2L | 8219870..8219991 | 482..603 | 100 | <- | Minus |
2L | 8220045..8220434 | 92..481 | 100 | <- | Minus |
2L | 8220623..8220713 | 1..91 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8219116..8219298 | 1049..1231 | 100 | <- | Minus |
2L | 8218071..8218504 | 1342..1775 | 100 | <- | Minus |
2L | 8218570..8218679 | 1232..1341 | 100 | <- | Minus |
2L | 8219362..8219806 | 604..1048 | 100 | <- | Minus |
2L | 8219870..8219991 | 482..603 | 100 | <- | Minus |
2L | 8220045..8220434 | 92..481 | 100 | <- | Minus |
2L | 8220623..8220713 | 1..91 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8218071..8218504 | 1342..1775 | 100 | <- | Minus |
arm_2L | 8218570..8218679 | 1232..1341 | 100 | <- | Minus |
arm_2L | 8219116..8219298 | 1049..1231 | 100 | <- | Minus |
arm_2L | 8219362..8219806 | 604..1048 | 100 | <- | Minus |
arm_2L | 8219870..8219991 | 482..603 | 100 | <- | Minus |
arm_2L | 8220045..8220434 | 92..481 | 100 | <- | Minus |
arm_2L | 8220623..8220713 | 1..91 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8218071..8218504 | 1342..1775 | 100 | <- | Minus |
2L | 8218570..8218679 | 1232..1341 | 100 | <- | Minus |
2L | 8219116..8219298 | 1049..1231 | 100 | <- | Minus |
2L | 8219362..8219806 | 604..1048 | 100 | <- | Minus |
2L | 8219870..8219991 | 482..603 | 100 | <- | Minus |
2L | 8220045..8220434 | 92..481 | 100 | <- | Minus |
2L | 8220623..8220713 | 1..91 | 100 | Minus |
Translation from 85 to 1434
> LD22082.pep MMDGTDDSNLLNSPSTNNGATMEIASPTNPLATPPATGGAPAPSGATNGS GSATSPDSSSSAPATPAVLGENALHVEISDALSEKEKVKFTVHTRTTLPG FSKKDNNVVRQHEEFVWLHDRIEENDDYAGYIIPPCPPRPDFDASREKLQ RLGEGEGNMTKEEFKKMKSELEAEYLATFKKTVAMHEVFLRRLASHPVFR VDQHLKVFLEYDQDLCAKPRKKMAIFGGFVKSLGKTTDEILLSATVRDVN DFFENELQFLTEYHGHLREAALRTEKMTQRHKDVGDSHQKISNALTQLST TEKGNVETFVAKTAEIFERIKNLETRVASDQDLKLGDTLRYYQRDSDAAK ALLIRRLRCLAAYEAANRNLEKARSKNKDVHAAETAQAEACEKFESMSAC GKEELIGFRNRRVAAFKKSLVELSELEIKHAKTQYEYLRQSLLALKEIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14626-PA | 448 | GF14626-PA | 1..448 | 1..449 | 2313 | 96.2 | Plus |
Dana\GF21580-PA | 457 | GF21580-PA | 34..446 | 35..438 | 195 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23465-PA | 449 | GG23465-PA | 1..449 | 1..449 | 2366 | 98.2 | Plus |
Dere\GG24942-PA | 458 | GG24942-PA | 33..447 | 35..438 | 197 | 22.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10246-PA | 448 | GH10246-PA | 1..448 | 1..449 | 2146 | 89.8 | Plus |
Dgri\GH11581-PA | 457 | GH11581-PA | 94..445 | 90..437 | 188 | 21.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snx6-PA | 449 | CG8282-PA | 1..449 | 1..449 | 2295 | 100 | Plus |
Snx6-PB | 455 | CG8282-PB | 1..455 | 1..449 | 2278 | 98.7 | Plus |
Snx1-PB | 456 | CG2774-PB | 33..444 | 35..437 | 224 | 21.1 | Plus |
Snx1-PA | 458 | CG2774-PA | 33..446 | 35..437 | 222 | 21 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15397-PA | 438 | GI15397-PA | 1..438 | 1..449 | 2150 | 92.7 | Plus |
Dmoj\GI17151-PA | 462 | GI17151-PA | 6..450 | 32..437 | 198 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19393-PA | 422 | GL19393-PA | 1..422 | 1..449 | 1969 | 87.8 | Plus |
Dper\GL19242-PA | 456 | GL19242-PA | 31..445 | 40..438 | 189 | 21.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20953-PA | 448 | GA20953-PA | 1..448 | 1..449 | 2146 | 94.2 | Plus |
Dpse\GA15459-PA | 456 | GA15459-PA | 31..445 | 40..438 | 194 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13127-PA | 449 | GM13127-PA | 1..449 | 1..449 | 2397 | 99.8 | Plus |
Dsec\GM11137-PA | 458 | GM11137-PA | 33..446 | 35..437 | 191 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22430-PA | 411 | GD22430-PA | 1..411 | 1..449 | 2158 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17278-PA | 432 | GJ17278-PA | 1..432 | 1..449 | 2094 | 91.1 | Plus |
Dvir\GJ17655-PA | 461 | GJ17655-PA | 6..449 | 33..437 | 191 | 21.9 | Plus |
Translation from 85 to 1434
> LD22082.hyp MMDGTDDSNLLNSPSTNNGATMEIASPTNPLATPPATGGAPAPSGATNGS GSATSPDSSSSAPATPAVLGENALHVEISDALSEKEKVKFTVHTRTTLPG FSKKDNNVVRQHEEFVWLHDRIEENDDYAGYIIPPCPPRPDFDASREKLQ RLGEGEGNMTKEEFKKMKSELEAEYLATFKKTVAMHEVFLRRLASHPVFR VDQHLKVFLEYDQDLCAKPRKKMAIFGGFVKSLGKTTDEILLSATVRDVN DFFENELQFLTEYHGHLREAALRTEKMTQRHKDVGDSHQKISNALTQLST TEKGNVETFVAKTAEIFERIKNLETRVASDQDLKLGDTLRYYQRDSDAAK ALLIRRLRCLAAYEAANRNLEKARSKNKDVHAAETAQAEACEKFESMSAC GKEELIGFRNRRVAAFKKSLVELSELEIKHAKTQYEYLRQSLLALKEIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snx6-PA | 449 | CG8282-PA | 1..449 | 1..449 | 2295 | 100 | Plus |
Snx6-PB | 455 | CG8282-PB | 1..455 | 1..449 | 2278 | 98.7 | Plus |
Snx1-PB | 456 | CG2774-PB | 33..444 | 35..437 | 224 | 21.1 | Plus |
Snx1-PA | 458 | CG2774-PA | 33..446 | 35..437 | 222 | 21 | Plus |