Clone LD22082 Report

Search the DGRC for LD22082

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:220
Well:82
Vector:pOT2
Associated Gene/TranscriptSnx6-RA
Protein status:LD22082.pep: gold
Preliminary Size:2200
Sequenced Size:1803

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8282 2001-01-01 Release 2 assignment
CG8282 2001-11-12 Blastp of sequenced clone
CG8282 2003-01-01 Sim4 clustering to Release 3
Snx6 2008-04-29 Release 5.5 accounting
Snx6 2008-08-15 Release 5.9 accounting
Snx6 2008-12-18 5.12 accounting

Clone Sequence Records

LD22082.complete Sequence

1803 bp (1803 high quality bases) assembled on 2001-11-12

GenBank Submission: AY069492

> LD22082.complete
CCACCTCTAGTTGAAATTCGCTCTCTGTAATTTGTAATAAAAACTTGTTT
TTAGCCAAATCATTTGTTATTTACTTGGCCGCAAGATGATGGACGGCACG
GATGACTCAAATCTGCTTAACAGCCCCTCCACCAACAATGGAGCCACAAT
GGAAATCGCCTCGCCAACAAATCCACTTGCCACTCCACCAGCAACAGGCG
GTGCACCCGCACCAAGTGGAGCCACAAATGGCAGTGGATCCGCCACATCG
CCGGATAGCTCCTCCTCAGCCCCGGCCACGCCGGCAGTTCTAGGCGAGAA
CGCCCTGCATGTCGAGATCTCCGATGCGCTCAGCGAAAAGGAGAAGGTCA
AGTTCACAGTGCACACCCGCACCACACTGCCGGGATTCTCAAAAAAGGAC
AATAACGTAGTGCGTCAGCACGAGGAGTTCGTCTGGCTACATGACCGTAT
TGAGGAGAACGACGACTATGCTGGCTACATTATTCCGCCCTGTCCACCTC
GTCCGGACTTCGATGCCTCCCGAGAGAAGCTGCAGCGTCTTGGCGAGGGC
GAAGGCAACATGACCAAAGAGGAGTTCAAAAAGATGAAGTCAGAGCTGGA
GGCTGAGTACCTAGCTACCTTCAAGAAGACGGTGGCCATGCACGAGGTTT
TCCTGCGCCGCCTTGCTAGTCATCCCGTCTTTCGCGTCGATCAGCACTTG
AAGGTTTTCCTGGAATACGACCAAGATCTGTGCGCTAAGCCACGCAAGAA
GATGGCCATCTTTGGCGGCTTTGTCAAGTCCCTGGGCAAGACCACAGACG
AGATCTTGTTGAGCGCCACGGTTCGGGATGTAAATGACTTCTTTGAGAAC
GAGCTGCAGTTCCTTACCGAGTACCACGGCCACTTGCGCGAGGCAGCACT
CAGGACGGAGAAAATGACGCAACGCCACAAGGATGTAGGCGACTCGCATC
AGAAGATTTCGAATGCGTTGACGCAGCTCTCGACTACGGAAAAGGGAAAT
GTGGAGACGTTTGTGGCCAAGACAGCGGAGATATTTGAAAGGATCAAGAA
TCTGGAAACCCGAGTGGCTAGCGATCAAGATCTCAAGCTGGGCGACACTC
TGCGCTACTATCAGCGGGATAGCGACGCTGCCAAAGCTCTACTTATCCGG
CGACTGCGGTGTTTGGCTGCTTATGAAGCGGCCAATCGAAACCTGGAGAA
GGCTCGCTCCAAAAACAAGGATGTTCATGCGGCCGAGACTGCCCAGGCGG
AGGCCTGTGAAAAATTCGAATCTATGTCTGCATGTGGAAAGGAGGAGTTG
ATCGGTTTCCGCAACCGACGGGTAGCTGCTTTCAAGAAGAGCCTCGTCGA
GCTCTCAGAGCTGGAGATCAAGCATGCCAAGACGCAGTATGAATATCTGC
GCCAATCACTGCTAGCGCTCAAAGAGATTGCCTGAGACGGGGAGCCGGAA
GTAGACAAGGAATAGAAGGATGAGTCACCCGCACATTGTTTACACACCCC
ATTGAAACGCAAGCCTCATCGATTACACACATCCGGGAGACGAAGTAAAT
CAATTGTTTAATTGCTAAGCAAACAGTTTATTATTGCACAGGCCAAATCG
AGTGCAACATTATTATCTTAGCCCACGTATTATATTAACGAATATTCATT
TGTTTTGTGAACAGAGCGCTTTTATATTTGTCAAACAAGCATTCCTCTCT
ACAGCATAAACTACAACTACATATATTGTAAACACTTGCATTTGAAGCAG
AATATAAACGAGAAATATTGTACAGAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

LD22082.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Snx6-RA 1929 Snx6-RA 93..1869 1..1777 8885 100 Plus
Snx6.a 1327 Snx6.a 28..1258 1..1231 6155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8218338..8218782 1048..604 2195 99.6 Minus
chr2L 23010047 chr2L 8217047..8217482 1775..1340 2165 99.8 Minus
chr2L 23010047 chr2L 8219021..8219411 481..91 1940 99.7 Minus
chr2L 23010047 chr2L 8218091..8218277 1232..1046 920 99.5 Minus
chr2L 23010047 chr2L 8218846..8218967 603..482 595 99.2 Minus
chr2L 23010047 chr2L 8217546..8217656 1341..1231 555 100 Minus
chr2L 23010047 chr2L 8219598..8219689 92..1 460 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8219362..8219806 1048..604 2225 100 Minus
2L 23513712 2L 8218069..8218506 1777..1340 2190 100 Minus
2L 23513712 2L 8220045..8220435 481..91 1955 100 Minus
2L 23513712 2L 8219115..8219301 1232..1046 935 100 Minus
2L 23513712 2L 8219870..8219991 603..482 610 100 Minus
2L 23513712 2L 8218570..8218680 1341..1231 555 100 Minus
2L 23513712 2L 8220622..8220713 92..1 460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8219362..8219806 1048..604 2225 100 Minus
2L 23513712 2L 8218069..8218506 1777..1340 2190 100 Minus
2L 23513712 2L 8220045..8220435 481..91 1955 100 Minus
2L 23513712 2L 8219115..8219301 1232..1046 935 100 Minus
2L 23513712 2L 8219870..8219991 603..482 610 100 Minus
2L 23513712 2L 8218570..8218680 1341..1231 555 100 Minus
2L 23513712 2L 8220622..8220713 92..1 460 100 Minus
Blast to na_te.dros performed 2019-03-16 16:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 328..395 105..36 120 65.7 Minus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6914..6981 105..36 120 65.7 Minus

LD22082.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:35:42 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8217047..8217480 1342..1775 99 <- Minus
chr2L 8217546..8217655 1232..1341 100 <- Minus
chr2L 8218092..8218274 1049..1231 99 <- Minus
chr2L 8218338..8218782 604..1048 99 <- Minus
chr2L 8218846..8218967 482..603 99 <- Minus
chr2L 8219021..8219410 92..481 99 <- Minus
chr2L 8219599..8219689 1..91 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:57:52 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 1..1350 86..1435 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:52 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 1..1350 86..1435 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:07 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 1..1350 86..1435 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:29 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 1..1350 86..1435 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:33:51 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 1..1350 86..1435 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:04:49 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 25..1799 1..1775 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:52 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 25..1799 1..1775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:07 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 29..1803 1..1775 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:29 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 25..1799 1..1775 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:33:51 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 29..1803 1..1775 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:42 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8219116..8219298 1049..1231 100 <- Minus
2L 8218071..8218504 1342..1775 100 <- Minus
2L 8218570..8218679 1232..1341 100 <- Minus
2L 8219362..8219806 604..1048 100 <- Minus
2L 8219870..8219991 482..603 100 <- Minus
2L 8220045..8220434 92..481 100 <- Minus
2L 8220623..8220713 1..91 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:42 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8219116..8219298 1049..1231 100 <- Minus
2L 8218071..8218504 1342..1775 100 <- Minus
2L 8218570..8218679 1232..1341 100 <- Minus
2L 8219362..8219806 604..1048 100 <- Minus
2L 8219870..8219991 482..603 100 <- Minus
2L 8220045..8220434 92..481 100 <- Minus
2L 8220623..8220713 1..91 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:42 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8219116..8219298 1049..1231 100 <- Minus
2L 8218071..8218504 1342..1775 100 <- Minus
2L 8218570..8218679 1232..1341 100 <- Minus
2L 8219362..8219806 604..1048 100 <- Minus
2L 8219870..8219991 482..603 100 <- Minus
2L 8220045..8220434 92..481 100 <- Minus
2L 8220623..8220713 1..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:07 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8218071..8218504 1342..1775 100 <- Minus
arm_2L 8218570..8218679 1232..1341 100 <- Minus
arm_2L 8219116..8219298 1049..1231 100 <- Minus
arm_2L 8219362..8219806 604..1048 100 <- Minus
arm_2L 8219870..8219991 482..603 100 <- Minus
arm_2L 8220045..8220434 92..481 100 <- Minus
arm_2L 8220623..8220713 1..91 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:31 Download gff for LD22082.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8218071..8218504 1342..1775 100 <- Minus
2L 8218570..8218679 1232..1341 100 <- Minus
2L 8219116..8219298 1049..1231 100 <- Minus
2L 8219362..8219806 604..1048 100 <- Minus
2L 8219870..8219991 482..603 100 <- Minus
2L 8220045..8220434 92..481 100 <- Minus
2L 8220623..8220713 1..91 100   Minus

LD22082.pep Sequence

Translation from 85 to 1434

> LD22082.pep
MMDGTDDSNLLNSPSTNNGATMEIASPTNPLATPPATGGAPAPSGATNGS
GSATSPDSSSSAPATPAVLGENALHVEISDALSEKEKVKFTVHTRTTLPG
FSKKDNNVVRQHEEFVWLHDRIEENDDYAGYIIPPCPPRPDFDASREKLQ
RLGEGEGNMTKEEFKKMKSELEAEYLATFKKTVAMHEVFLRRLASHPVFR
VDQHLKVFLEYDQDLCAKPRKKMAIFGGFVKSLGKTTDEILLSATVRDVN
DFFENELQFLTEYHGHLREAALRTEKMTQRHKDVGDSHQKISNALTQLST
TEKGNVETFVAKTAEIFERIKNLETRVASDQDLKLGDTLRYYQRDSDAAK
ALLIRRLRCLAAYEAANRNLEKARSKNKDVHAAETAQAEACEKFESMSAC
GKEELIGFRNRRVAAFKKSLVELSELEIKHAKTQYEYLRQSLLALKEIA*

LD22082.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14626-PA 448 GF14626-PA 1..448 1..449 2313 96.2 Plus
Dana\GF21580-PA 457 GF21580-PA 34..446 35..438 195 22.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23465-PA 449 GG23465-PA 1..449 1..449 2366 98.2 Plus
Dere\GG24942-PA 458 GG24942-PA 33..447 35..438 197 22.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10246-PA 448 GH10246-PA 1..448 1..449 2146 89.8 Plus
Dgri\GH11581-PA 457 GH11581-PA 94..445 90..437 188 21.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Snx6-PA 449 CG8282-PA 1..449 1..449 2295 100 Plus
Snx6-PB 455 CG8282-PB 1..455 1..449 2278 98.7 Plus
Snx1-PB 456 CG2774-PB 33..444 35..437 224 21.1 Plus
Snx1-PA 458 CG2774-PA 33..446 35..437 222 21 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15397-PA 438 GI15397-PA 1..438 1..449 2150 92.7 Plus
Dmoj\GI17151-PA 462 GI17151-PA 6..450 32..437 198 22.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19393-PA 422 GL19393-PA 1..422 1..449 1969 87.8 Plus
Dper\GL19242-PA 456 GL19242-PA 31..445 40..438 189 21.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20953-PA 448 GA20953-PA 1..448 1..449 2146 94.2 Plus
Dpse\GA15459-PA 456 GA15459-PA 31..445 40..438 194 22.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13127-PA 449 GM13127-PA 1..449 1..449 2397 99.8 Plus
Dsec\GM11137-PA 458 GM11137-PA 33..446 35..437 191 22.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22430-PA 411 GD22430-PA 1..411 1..449 2158 91.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17278-PA 432 GJ17278-PA 1..432 1..449 2094 91.1 Plus
Dvir\GJ17655-PA 461 GJ17655-PA 6..449 33..437 191 21.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14977-PA 455 GK14977-PA 1..455 1..449 2198 92.1 Plus
Dwil\GK24153-PA 456 GK24153-PA 19..445 48..438 178 22.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11109-PA 449 GE11109-PA 1..449 1..449 2378 98.7 Plus
Dyak\GE18233-PA 458 GE18233-PA 33..446 35..437 191 22.7 Plus

LD22082.hyp Sequence

Translation from 85 to 1434

> LD22082.hyp
MMDGTDDSNLLNSPSTNNGATMEIASPTNPLATPPATGGAPAPSGATNGS
GSATSPDSSSSAPATPAVLGENALHVEISDALSEKEKVKFTVHTRTTLPG
FSKKDNNVVRQHEEFVWLHDRIEENDDYAGYIIPPCPPRPDFDASREKLQ
RLGEGEGNMTKEEFKKMKSELEAEYLATFKKTVAMHEVFLRRLASHPVFR
VDQHLKVFLEYDQDLCAKPRKKMAIFGGFVKSLGKTTDEILLSATVRDVN
DFFENELQFLTEYHGHLREAALRTEKMTQRHKDVGDSHQKISNALTQLST
TEKGNVETFVAKTAEIFERIKNLETRVASDQDLKLGDTLRYYQRDSDAAK
ALLIRRLRCLAAYEAANRNLEKARSKNKDVHAAETAQAEACEKFESMSAC
GKEELIGFRNRRVAAFKKSLVELSELEIKHAKTQYEYLRQSLLALKEIA*

LD22082.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
Snx6-PA 449 CG8282-PA 1..449 1..449 2295 100 Plus
Snx6-PB 455 CG8282-PB 1..455 1..449 2278 98.7 Plus
Snx1-PB 456 CG2774-PB 33..444 35..437 224 21.1 Plus
Snx1-PA 458 CG2774-PA 33..446 35..437 222 21 Plus