Clone LD22180 Report

Search the DGRC for LD22180

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:221
Well:80
Vector:pOT2
Associated Gene/TranscriptBCL7-like-RA
Protein status:LD22180.pep: gold
Preliminary Size:1721
Sequenced Size:1670

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17252 2001-01-01 Release 2 assignment
CG17252 2001-09-19 Blastp of sequenced clone
CG17252 2003-01-01 Sim4 clustering to Release 3
BCL7-like 2008-04-29 Release 5.5 accounting
BCL7-like 2008-08-15 Release 5.9 accounting
BCL7-like 2008-12-18 5.12 accounting

Clone Sequence Records

LD22180.complete Sequence

1670 bp (1670 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060366

> LD22180.complete
AATCACGCTTGCTATCGATTACTTATTTTTGTTGTATTAAAAAATATTTT
TGCGAATTGCCAAAAAAACTGAACTATCCACTGGTTAACTGGTCGAGACC
AGCCAAAATCACGAGACACGATCCCACTTAAAAGCCAGACGGGGAGAGTT
CAGTTGTGAAGCAGCCAGAAGTAGCGAAAACACTTAGCGGCTTTTCGTGT
GACGCCGACTTTGGCTAAGGAGGAAAAGCGATTAAAGCAGGAAGAGCCAG
ACCAGGCGCCATCGACCCACAGACATGTCGCGCAGCGTGCGGGCGGAGAC
GCGCAGCCGGGCGAAGGATGACATCAAGCGGGTGATGCAGGCGGTGGACA
AGGTGCGCCACTGGGAGAAGAAGTGGGTGACCATCAGCGACACCACCATG
AAAATCTACAAATGGGTGCCCATCGCCTCCGCCAGTGAGAAGAAGGCCAA
GCTGGAGTCCTCGCCGGGATCGGCTGCTGTCCGGAGACCGCCCCCCGGCT
CGGGCGTTACGCCGGTCGGCGGCAGCAAGAGCGATAAGGAGAACTCTCAG
AAGGGCACGCCCACGCCGCCGCAGATCACGCCCAGCTACCAGGGACTAAC
CGCCGAGGACTCTAACACCTGTTTCTCCGTCGTGTCCGACAGCCAGGGCG
CCGACTTCGTGTCGAGTATGCCCTTCTCTGAGGACTCGAACTCGCAGGGC
AGCGATGGACCCGTGAAGCGATTGAAGACGAGCGACTAGCCAAACATTCG
CAGGCACAGCGTCTACAGCAGCAGCAGCAACTAACTAAGAGCCCTAGTTA
AGTTAGGTTAGCACCGACAGCACCGGACGACGAGAGAGTATCTGCCTCAG
CCCAAGACTTAAGCACTTCCCTTACACTAGCAGTTTCTTTACGGCTGTCA
GACTGTCCCGCCATAAGCCTCATTTATTTGTCATCAAAGCGGGGGTAGCT
GATGGTCGATAGGTCATAGGTCCATAGCATTAAGATCAAATGTGACAACT
TATTTATTAGAAAGACATGCGAATCGATTTGAGTACGAACGTAGAATGGA
TATGTAATTTTGTAATAGCTGCTTAAGATACAAAACAGCCAGTCTGAATG
TTGTAAACCGTGTAAAGTTTTTTGACTTTCGATTTCTAGACGTTTTGACA
ACAACTAGTTTATAACTTAGCGTACTAACATAAAGGCTACTTTTTTTTGT
TCACTATAAAACTGGCTTGAAAACAATTGATGTACTCGTTCATAAGTTGA
TTTTCCTTGTAAATTTCGCTTGTAAACGCTTTTCTACGCATTCAGTGAAT
GCAACAGACTTGAAATCGAAGCGTTTACAAGCTAAAGCTTATAGTTTGTT
AACGAATTGATCAAAGCAAGTCAAACCGAAAACGAATATGAACCCGCGAT
AGATGCACAAAGATTAACCGAAATCGAAAATTGAACCAGTAAACCTCTTT
ATAGTACACTTACCAACATAAATGTGACATTAACATTTAACTGCCAGCAG
GGCGCGAAAAATATGCAAATGTTCGCTGAAGATTTACTTATTGTTTTTTT
TTTACATTTTTTTATGATTTTTCTTTATTGAATGTTTTAGTTTTCTTCAT
CTTACAATTTTCCCCCCGTATGTATAATAATAAAAAAAAGTTTTATTCTT
TCAAAAAAAAAAAAAAAAAA

LD22180.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
BCL7-like.a 2604 BCL7-like.a 165..1822 1..1658 8275 99.9 Plus
BCL7-like-RA 1816 BCL7-like-RA 165..1816 1..1652 8260 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9249251..9250284 621..1652 5075 99.6 Plus
chrX 22417052 chrX 9248334..9248955 1..622 3080 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:10:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9357563..9358600 621..1658 5175 99.9 Plus
X 23542271 X 9356646..9357267 1..622 3110 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9365661..9366698 621..1658 5175 99.9 Plus
X 23527363 X 9364744..9365365 1..622 3110 100 Plus
Blast to na_te.dros performed 2019-03-16 09:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2431..2552 743..868 113 61.7 Plus

LD22180.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:30:38 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9248334..9248953 1..620 99 -> Plus
chrX 9249251..9250284 621..1652 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:02 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..465 275..739 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:50 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..465 275..739 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:01:51 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..465 275..739 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:27 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..465 275..739 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:25 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..465 275..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:37 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..1652 1..1652 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:50 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..1652 1..1652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:01:51 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 13..1664 1..1652 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:27 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..1652 1..1652 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:25 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 13..1664 1..1652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:38 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
X 9356646..9357265 1..620 100 -> Plus
X 9357563..9358594 621..1652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:38 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
X 9356646..9357265 1..620 100 -> Plus
X 9357563..9358594 621..1652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:38 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
X 9356646..9357265 1..620 100 -> Plus
X 9357563..9358594 621..1652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:01:51 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9250679..9251298 1..620 100 -> Plus
arm_X 9251596..9252627 621..1652 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:20 Download gff for LD22180.complete
Subject Subject Range Query Range Percent Splice Strand
X 9364744..9365363 1..620 100 -> Plus
X 9365661..9366692 621..1652 100   Plus

LD22180.pep Sequence

Translation from 274 to 738

> LD22180.pep
MSRSVRAETRSRAKDDIKRVMQAVDKVRHWEKKWVTISDTTMKIYKWVPI
ASASEKKAKLESSPGSAAVRRPPPGSGVTPVGGSKSDKENSQKGTPTPPQ
ITPSYQGLTAEDSNTCFSVVSDSQGADFVSSMPFSEDSNSQGSDGPVKRL
KTSD*

LD22180.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21781-PA 160 GF21781-PA 1..160 1..154 630 81.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18312-PA 154 GG18312-PA 1..154 1..154 783 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24064-PA 136 GH24064-PA 1..136 1..154 609 79.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
BCL7-like-PA 154 CG17252-PA 1..154 1..154 794 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14646-PA 135 GI14646-PA 1..135 1..154 626 81.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16501-PA 136 GL16501-PA 1..136 1..154 627 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14415-PA 136 GA14415-PA 1..136 1..154 624 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11367-PA 154 GM11367-PA 1..154 1..154 777 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\BCL7-like-PA 156 GD24692-PA 1..116 1..116 593 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19292-PA 135 GJ19292-PA 1..135 1..154 620 80.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25375-PA 135 GK25375-PA 1..135 1..154 618 80.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17793-PA 154 GE17793-PA 1..154 1..154 781 98.1 Plus

LD22180.hyp Sequence

Translation from 274 to 738

> LD22180.hyp
MSRSVRAETRSRAKDDIKRVMQAVDKVRHWEKKWVTISDTTMKIYKWVPI
ASASEKKAKLESSPGSAAVRRPPPGSGVTPVGGSKSDKENSQKGTPTPPQ
ITPSYQGLTAEDSNTCFSVVSDSQGADFVSSMPFSEDSNSQGSDGPVKRL
KTSD*

LD22180.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
BCL7-like-PA 154 CG17252-PA 1..154 1..154 794 100 Plus