BDGP Sequence Production Resources |
Search the DGRC for LD22216
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 222 |
Well: | 16 |
Vector: | pOT2 |
Associated Gene/Transcript | mod-RA |
Protein status: | LD22216.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1936 |
Gene | Date | Evidence |
---|---|---|
CG2050 | 2001-01-01 | Release 2 assignment |
CG2050 | 2001-09-19 | Blastp of sequenced clone |
CG2050 | 2003-01-01 | Sim4 clustering to Release 3 |
mod | 2008-04-29 | Release 5.5 accounting |
mod | 2008-08-15 | Release 5.9 accounting |
mod | 2008-12-18 | 5.12 accounting |
1936 bp (1936 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058519
> LD22216.complete ATTGAACGAAACCACGCGTTGTTCAGTCCAAACTTGACTTTGCTAATTTT GCCCAGAAAACCTCTAAAAGCTGTCAAAATGGCCCAAAAGAAAGCCGTCA CCGTCAAAGGAAAAAAAGCTACGAATGGAGAGGAAAAGCCTTTGGCCAAA CGGGTAACCAAGTCCACAAAGGTACAGGAAGAGGAGACAGTAGTCCCCCA ATCGCCTTCCAAAAAATCCAGAAAACAGCCTGTTAAAGAAGTGCCGCAGT TCAGTGAAGAGGACGAGTCTGATGTGGAGGAGCAAAATGACGAGCAGCCA GGGGACGACAGCGACTTTGAGACCGAAGAGGCAGCGGGCTTAATTGACGA CGAGGCTGAGGAAGATGAAGAGTACAATAGTGACGATGAGGAAGATGATG ATGACGATGAGTTGGAGCCTGGTGAGGTTTCCAAAAGTGAAGGCGCGGAT GAGGTAGATGAATCCGATGATGATGAAGAAGCGCCTGTAGAGAAGCCAGT TTCCAAGAAATCAGAAAAAGCCAACTCTGAAAAGTCCGAAGAAAATAGAG GAATTCCAAAAGTAAAGGTTGGCAAGATTCCGCTGGGAACGCCAAAAAAC CAGATCGTTTTTGTCACAAACCTACCAAACGAGTATCTCCACAAGGACTT GGTCGCATTGTTCGCCAAGTTCGGACGACTTTCCGCTTTGCAGCGTTTCA CTAATTTGAATGGCAATAAATCAGTTCTCATTGCCTTTGATACGTCAACT GGAGCAGAAGCTGTTCTGCAGGCTAAGCCTAAAGCGTTAACCCTTGGAGA CAATGTTTTGTCTGTGTCCCAACCGAGAAATAAGGAAGAGAACAACGAAC GCACGGTGGTGGTTGGCCTGATTGGACCTAATATTACCAAGGACGACTTA AAAACCTTTTTTGAGAAGGTAGCTCCCGTGGAGGCGGTGACTATATCCAG TAACCGCCTCATGCCCAGAGCTTTTGTACGTTTGGCGTCGGTCGATGACA TACCGAAGGCTCTTAAACTGCATAGCACTGAGCTGTTTTCTCGCTTTATA ACGGTTCGTCGGATCTCACAAGAATCGATTTCACGTACCAGTGAACTTAC CTTGGTTGTCGAAAATGTGGGCAAACACGAGTCTTACAGCTCCGACGCTC TAGAAAAGATATTCAAAAAATTTGGTGATGTTGAAGAAATCGACGTTGTG TGCAGCAAGGCAGTTTTAGCTTTTGTCACGTTCAAGCAGTCGGATGCCGC CACGAAGGCTTTAGCACAACTCGACGGAAAGACTGTTAATAAGTTTGAGT GGAAGCTTCACCGATTCGAACGCAGCACCTCGGGGAGGGCCATTCTTGTG ACGAACTTGACTTCAGATGCTACTGAAGCCGACCTGCGGAAAGTGTTTAA CGATAGCGGCGAAATCGAAAGCATCATAATGTTGGGCCAAAAAGCGGTAG TAAAGTTCAAGGACGATGAGGGTTTCTGCAAATCTTTCTTGGCTAATGAA AGCATTGTAAACAACGCCCCTATATTTATTGAGCCAAACTCTCTGCTGAA GCATAGATTGTTAAAGAAACGCTTAGCTATTGGTCAGACCCGCGCCCCGC GGAAGTTCCAAAAGGACACTAAGCCAAACTTTGGTAAAAAACCATTTAAC AAGCGCCCGGCACAAGAGAATGGTGGTAAATCGTTTGTTAAAAGGGCAAG ATTTTAGAACTTGAACACTACAAGAATTAGCTTTAAGTTGCGTAGTACCA TAAATACGGCCACAGCCCCGATAATTCCATACAACTTGATGTTATGGATT TAGTTGATAAGAGATACTCCATTAAATTTTTACCGGAGAAATGCTAGCCG TATTCAAGCAGATGTCGATTTTTATAAGCATCGGACATGGAACTAAATAA AAGTAAATAAAAACCCCGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mod-RA | 2512 | mod-RA | 389..2307 | 1..1919 | 9595 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 27875725..27876460 | 631..1366 | 3650 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 27876525..27877078 | 1365..1918 | 2770 | 100 | Plus |
chr3R | 27901430 | chr3R | 27874760..27875080 | 1..321 | 1575 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 27875343..27875658 | 316..631 | 1565 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 32053622..32054357 | 631..1366 | 3680 | 100 | Plus |
3R | 32079331 | 3R | 32054422..32054976 | 1365..1919 | 2775 | 100 | Plus |
3R | 32079331 | 3R | 32052657..32052977 | 1..321 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 32053240..32053555 | 316..631 | 1565 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 31794453..31795188 | 631..1366 | 3680 | 100 | Plus |
3R | 31820162 | 3R | 31795253..31795807 | 1365..1919 | 2775 | 100 | Plus |
3R | 31820162 | 3R | 31793488..31793808 | 1..321 | 1605 | 100 | Plus |
3R | 31820162 | 3R | 31794071..31794386 | 316..631 | 1565 | 99.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27874760..27875080 | 1..321 | 99 | -> | Plus |
chr3R | 27875349..27875371 | 322..344 | 100 | == | Plus |
chr3R | 27875438..27875658 | 411..631 | 100 | -> | Plus |
chr3R | 27875726..27876460 | 632..1366 | 99 | -> | Plus |
chr3R | 27876527..27877078 | 1367..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RA | 1..1629 | 79..1707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RB | 1..1629 | 79..1707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RA | 1..1629 | 79..1707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RA | 1..1629 | 79..1707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RA | 1..1629 | 79..1707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RA | 359..2275 | 1..1917 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RB | 56..1972 | 1..1917 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RA | 371..2287 | 1..1917 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RA | 359..2275 | 1..1917 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mod-RA | 371..2287 | 1..1917 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 32052657..32052977 | 1..321 | 100 | -> | Plus |
3R | 32053246..32053555 | 322..631 | 100 | -> | Plus |
3R | 32053623..32054357 | 632..1366 | 100 | -> | Plus |
3R | 32054424..32054975 | 1367..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 32052657..32052977 | 1..321 | 100 | -> | Plus |
3R | 32053246..32053555 | 322..631 | 100 | -> | Plus |
3R | 32053623..32054357 | 632..1366 | 100 | -> | Plus |
3R | 32054424..32054975 | 1367..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 32052657..32052977 | 1..321 | 100 | -> | Plus |
3R | 32053246..32053555 | 322..631 | 100 | -> | Plus |
3R | 32053623..32054357 | 632..1366 | 100 | -> | Plus |
3R | 32054424..32054975 | 1367..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27878379..27878699 | 1..321 | 100 | -> | Plus |
arm_3R | 27878968..27879277 | 322..631 | 100 | -> | Plus |
arm_3R | 27879345..27880079 | 632..1366 | 100 | -> | Plus |
arm_3R | 27880146..27880697 | 1367..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31793488..31793808 | 1..321 | 100 | -> | Plus |
3R | 31794077..31794386 | 322..631 | 100 | -> | Plus |
3R | 31794454..31795188 | 632..1366 | 100 | -> | Plus |
3R | 31795255..31795806 | 1367..1918 | 100 | Plus |
Translation from 0 to 1706
> LD22216.hyp IERNHALFSPNLTLLILPRKPLKAVKMAQKKAVTVKGKKATNGEEKPLAK RVTKSTKVQEEETVVPQSPSKKSRKQPVKEVPQFSEEDESDVEEQNDEQP GDDSDFETEEAAGLIDDEAEEDEEYNSDDEEDDDDDELEPGEVSKSEGAD EVDESDDDEEAPVEKPVSKKSEKANSEKSEENRGIPKVKVGKIPLGTPKN QIVFVTNLPNEYLHKDLVALFAKFGRLSALQRFTNLNGNKSVLIAFDTST GAEAVLQAKPKALTLGDNVLSVSQPRNKEENNERTVVVGLIGPNITKDDL KTFFEKVAPVEAVTISSNRLMPRAFVRLASVDDIPKALKLHSTELFSRFI TVRRISQESISRTSELTLVVENVGKHESYSSDALEKIFKKFGDVEEIDVV CSKAVLAFVTFKQSDAATKALAQLDGKTVNKFEWKLHRFERSTSGRAILV TNLTSDATEADLRKVFNDSGEIESIIMLGQKAVVKFKDDEGFCKSFLANE SIVNNAPIFIEPNSLLKHRLLKKRLAIGQTRAPRKFQKDTKPNFGKKPFN KRPAQENGGKSFVKRARF*
Translation from 78 to 1706
> LD22216.pep MAQKKAVTVKGKKATNGEEKPLAKRVTKSTKVQEEETVVPQSPSKKSRKQ PVKEVPQFSEEDESDVEEQNDEQPGDDSDFETEEAAGLIDDEAEEDEEYN SDDEEDDDDDELEPGEVSKSEGADEVDESDDDEEAPVEKPVSKKSEKANS EKSEENRGIPKVKVGKIPLGTPKNQIVFVTNLPNEYLHKDLVALFAKFGR LSALQRFTNLNGNKSVLIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQPR NKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTISSNRLMPRAFV RLASVDDIPKALKLHSTELFSRFITVRRISQESISRTSELTLVVENVGKH ESYSSDALEKIFKKFGDVEEIDVVCSKAVLAFVTFKQSDAATKALAQLDG KTVNKFEWKLHRFERSTSGRAILVTNLTSDATEADLRKVFNDSGEIESII MLGQKAVVKFKDDEGFCKSFLANESIVNNAPIFIEPNSLLKHRLLKKRLA IGQTRAPRKFQKDTKPNFGKKPFNKRPAQENGGKSFVKRARF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17499-PA | 542 | GF17499-PA | 1..526 | 1..527 | 1024 | 51.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11841-PA | 537 | GG11841-PA | 15..537 | 15..542 | 2121 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13848-PA | 534 | GH13848-PA | 28..533 | 50..541 | 1005 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mod-PC | 542 | CG2050-PC | 1..542 | 1..542 | 2725 | 100 | Plus |
mod-PA | 542 | CG2050-PA | 1..542 | 1..542 | 2725 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24822-PA | 520 | GI24822-PA | 36..518 | 59..541 | 882 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23456-PA | 596 | GL23456-PA | 132..593 | 90..541 | 1019 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15207-PA | 595 | GA15207-PA | 1..592 | 1..541 | 1012 | 45.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16461-PA | 546 | GM16461-PA | 1..546 | 1..542 | 2428 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21612-PA | 540 | GD21612-PA | 1..540 | 1..542 | 2397 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24466-PA | 543 | GJ24466-PA | 53..531 | 76..532 | 927 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12167-PA | 548 | GK12167-PA | 14..533 | 18..533 | 951 | 43.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10975-PA | 537 | GE10975-PA | 1..537 | 1..542 | 1937 | 77 | Plus |