Clone LD22216 Report

Search the DGRC for LD22216

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:222
Well:16
Vector:pOT2
Associated Gene/Transcriptmod-RA
Protein status:LD22216.pep: gold
Preliminary Size:2200
Sequenced Size:1936

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2050 2001-01-01 Release 2 assignment
CG2050 2001-09-19 Blastp of sequenced clone
CG2050 2003-01-01 Sim4 clustering to Release 3
mod 2008-04-29 Release 5.5 accounting
mod 2008-08-15 Release 5.9 accounting
mod 2008-12-18 5.12 accounting

Clone Sequence Records

LD22216.complete Sequence

1936 bp (1936 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058519

> LD22216.complete
ATTGAACGAAACCACGCGTTGTTCAGTCCAAACTTGACTTTGCTAATTTT
GCCCAGAAAACCTCTAAAAGCTGTCAAAATGGCCCAAAAGAAAGCCGTCA
CCGTCAAAGGAAAAAAAGCTACGAATGGAGAGGAAAAGCCTTTGGCCAAA
CGGGTAACCAAGTCCACAAAGGTACAGGAAGAGGAGACAGTAGTCCCCCA
ATCGCCTTCCAAAAAATCCAGAAAACAGCCTGTTAAAGAAGTGCCGCAGT
TCAGTGAAGAGGACGAGTCTGATGTGGAGGAGCAAAATGACGAGCAGCCA
GGGGACGACAGCGACTTTGAGACCGAAGAGGCAGCGGGCTTAATTGACGA
CGAGGCTGAGGAAGATGAAGAGTACAATAGTGACGATGAGGAAGATGATG
ATGACGATGAGTTGGAGCCTGGTGAGGTTTCCAAAAGTGAAGGCGCGGAT
GAGGTAGATGAATCCGATGATGATGAAGAAGCGCCTGTAGAGAAGCCAGT
TTCCAAGAAATCAGAAAAAGCCAACTCTGAAAAGTCCGAAGAAAATAGAG
GAATTCCAAAAGTAAAGGTTGGCAAGATTCCGCTGGGAACGCCAAAAAAC
CAGATCGTTTTTGTCACAAACCTACCAAACGAGTATCTCCACAAGGACTT
GGTCGCATTGTTCGCCAAGTTCGGACGACTTTCCGCTTTGCAGCGTTTCA
CTAATTTGAATGGCAATAAATCAGTTCTCATTGCCTTTGATACGTCAACT
GGAGCAGAAGCTGTTCTGCAGGCTAAGCCTAAAGCGTTAACCCTTGGAGA
CAATGTTTTGTCTGTGTCCCAACCGAGAAATAAGGAAGAGAACAACGAAC
GCACGGTGGTGGTTGGCCTGATTGGACCTAATATTACCAAGGACGACTTA
AAAACCTTTTTTGAGAAGGTAGCTCCCGTGGAGGCGGTGACTATATCCAG
TAACCGCCTCATGCCCAGAGCTTTTGTACGTTTGGCGTCGGTCGATGACA
TACCGAAGGCTCTTAAACTGCATAGCACTGAGCTGTTTTCTCGCTTTATA
ACGGTTCGTCGGATCTCACAAGAATCGATTTCACGTACCAGTGAACTTAC
CTTGGTTGTCGAAAATGTGGGCAAACACGAGTCTTACAGCTCCGACGCTC
TAGAAAAGATATTCAAAAAATTTGGTGATGTTGAAGAAATCGACGTTGTG
TGCAGCAAGGCAGTTTTAGCTTTTGTCACGTTCAAGCAGTCGGATGCCGC
CACGAAGGCTTTAGCACAACTCGACGGAAAGACTGTTAATAAGTTTGAGT
GGAAGCTTCACCGATTCGAACGCAGCACCTCGGGGAGGGCCATTCTTGTG
ACGAACTTGACTTCAGATGCTACTGAAGCCGACCTGCGGAAAGTGTTTAA
CGATAGCGGCGAAATCGAAAGCATCATAATGTTGGGCCAAAAAGCGGTAG
TAAAGTTCAAGGACGATGAGGGTTTCTGCAAATCTTTCTTGGCTAATGAA
AGCATTGTAAACAACGCCCCTATATTTATTGAGCCAAACTCTCTGCTGAA
GCATAGATTGTTAAAGAAACGCTTAGCTATTGGTCAGACCCGCGCCCCGC
GGAAGTTCCAAAAGGACACTAAGCCAAACTTTGGTAAAAAACCATTTAAC
AAGCGCCCGGCACAAGAGAATGGTGGTAAATCGTTTGTTAAAAGGGCAAG
ATTTTAGAACTTGAACACTACAAGAATTAGCTTTAAGTTGCGTAGTACCA
TAAATACGGCCACAGCCCCGATAATTCCATACAACTTGATGTTATGGATT
TAGTTGATAAGAGATACTCCATTAAATTTTTACCGGAGAAATGCTAGCCG
TATTCAAGCAGATGTCGATTTTTATAAGCATCGGACATGGAACTAAATAA
AAGTAAATAAAAACCCCGAAAAAAAAAAAAAAAAAA

LD22216.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
mod-RA 2512 mod-RA 389..2307 1..1919 9595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27875725..27876460 631..1366 3650 99.7 Plus
chr3R 27901430 chr3R 27876525..27877078 1365..1918 2770 100 Plus
chr3R 27901430 chr3R 27874760..27875080 1..321 1575 99.4 Plus
chr3R 27901430 chr3R 27875343..27875658 316..631 1565 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 32053622..32054357 631..1366 3680 100 Plus
3R 32079331 3R 32054422..32054976 1365..1919 2775 100 Plus
3R 32079331 3R 32052657..32052977 1..321 1605 100 Plus
3R 32079331 3R 32053240..32053555 316..631 1565 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31794453..31795188 631..1366 3680 100 Plus
3R 31820162 3R 31795253..31795807 1365..1919 2775 100 Plus
3R 31820162 3R 31793488..31793808 1..321 1605 100 Plus
3R 31820162 3R 31794071..31794386 316..631 1565 99.6 Plus
Blast to na_te.dros performed on 2019-03-15 18:24:48 has no hits.

LD22216.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:45 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27874760..27875080 1..321 99 -> Plus
chr3R 27875349..27875371 322..344 100 == Plus
chr3R 27875438..27875658 411..631 100 -> Plus
chr3R 27875726..27876460 632..1366 99 -> Plus
chr3R 27876527..27877078 1367..1918 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:06 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RA 1..1629 79..1707 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:52 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RB 1..1629 79..1707 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:31 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RA 1..1629 79..1707 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:28 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RA 1..1629 79..1707 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:50 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RA 1..1629 79..1707 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:39 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RA 359..2275 1..1917 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:51 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RB 56..1972 1..1917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:31 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RA 371..2287 1..1917 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:28 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RA 359..2275 1..1917 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:50 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
mod-RA 371..2287 1..1917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:45 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 32052657..32052977 1..321 100 -> Plus
3R 32053246..32053555 322..631 100 -> Plus
3R 32053623..32054357 632..1366 100 -> Plus
3R 32054424..32054975 1367..1918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:45 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 32052657..32052977 1..321 100 -> Plus
3R 32053246..32053555 322..631 100 -> Plus
3R 32053623..32054357 632..1366 100 -> Plus
3R 32054424..32054975 1367..1918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:45 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 32052657..32052977 1..321 100 -> Plus
3R 32053246..32053555 322..631 100 -> Plus
3R 32053623..32054357 632..1366 100 -> Plus
3R 32054424..32054975 1367..1918 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:31 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27878379..27878699 1..321 100 -> Plus
arm_3R 27878968..27879277 322..631 100 -> Plus
arm_3R 27879345..27880079 632..1366 100 -> Plus
arm_3R 27880146..27880697 1367..1918 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:22 Download gff for LD22216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31793488..31793808 1..321 100 -> Plus
3R 31794077..31794386 322..631 100 -> Plus
3R 31794454..31795188 632..1366 100 -> Plus
3R 31795255..31795806 1367..1918 100   Plus

LD22216.hyp Sequence

Translation from 0 to 1706

> LD22216.hyp
IERNHALFSPNLTLLILPRKPLKAVKMAQKKAVTVKGKKATNGEEKPLAK
RVTKSTKVQEEETVVPQSPSKKSRKQPVKEVPQFSEEDESDVEEQNDEQP
GDDSDFETEEAAGLIDDEAEEDEEYNSDDEEDDDDDELEPGEVSKSEGAD
EVDESDDDEEAPVEKPVSKKSEKANSEKSEENRGIPKVKVGKIPLGTPKN
QIVFVTNLPNEYLHKDLVALFAKFGRLSALQRFTNLNGNKSVLIAFDTST
GAEAVLQAKPKALTLGDNVLSVSQPRNKEENNERTVVVGLIGPNITKDDL
KTFFEKVAPVEAVTISSNRLMPRAFVRLASVDDIPKALKLHSTELFSRFI
TVRRISQESISRTSELTLVVENVGKHESYSSDALEKIFKKFGDVEEIDVV
CSKAVLAFVTFKQSDAATKALAQLDGKTVNKFEWKLHRFERSTSGRAILV
TNLTSDATEADLRKVFNDSGEIESIIMLGQKAVVKFKDDEGFCKSFLANE
SIVNNAPIFIEPNSLLKHRLLKKRLAIGQTRAPRKFQKDTKPNFGKKPFN
KRPAQENGGKSFVKRARF*

LD22216.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
mod-PC 542 CG2050-PC 1..542 27..568 2725 100 Plus
mod-PA 542 CG2050-PA 1..542 27..568 2725 100 Plus

LD22216.pep Sequence

Translation from 78 to 1706

> LD22216.pep
MAQKKAVTVKGKKATNGEEKPLAKRVTKSTKVQEEETVVPQSPSKKSRKQ
PVKEVPQFSEEDESDVEEQNDEQPGDDSDFETEEAAGLIDDEAEEDEEYN
SDDEEDDDDDELEPGEVSKSEGADEVDESDDDEEAPVEKPVSKKSEKANS
EKSEENRGIPKVKVGKIPLGTPKNQIVFVTNLPNEYLHKDLVALFAKFGR
LSALQRFTNLNGNKSVLIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQPR
NKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTISSNRLMPRAFV
RLASVDDIPKALKLHSTELFSRFITVRRISQESISRTSELTLVVENVGKH
ESYSSDALEKIFKKFGDVEEIDVVCSKAVLAFVTFKQSDAATKALAQLDG
KTVNKFEWKLHRFERSTSGRAILVTNLTSDATEADLRKVFNDSGEIESII
MLGQKAVVKFKDDEGFCKSFLANESIVNNAPIFIEPNSLLKHRLLKKRLA
IGQTRAPRKFQKDTKPNFGKKPFNKRPAQENGGKSFVKRARF*

LD22216.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17499-PA 542 GF17499-PA 1..526 1..527 1024 51.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11841-PA 537 GG11841-PA 15..537 15..542 2121 84 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13848-PA 534 GH13848-PA 28..533 50..541 1005 47.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
mod-PC 542 CG2050-PC 1..542 1..542 2725 100 Plus
mod-PA 542 CG2050-PA 1..542 1..542 2725 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24822-PA 520 GI24822-PA 36..518 59..541 882 45.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23456-PA 596 GL23456-PA 132..593 90..541 1019 49.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15207-PA 595 GA15207-PA 1..592 1..541 1012 45.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16461-PA 546 GM16461-PA 1..546 1..542 2428 93.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21612-PA 540 GD21612-PA 1..540 1..542 2397 93.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24466-PA 543 GJ24466-PA 53..531 76..532 927 45.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12167-PA 548 GK12167-PA 14..533 18..533 951 43.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10975-PA 537 GE10975-PA 1..537 1..542 1937 77 Plus