Clone LD22255 Report

Search the DGRC for LD22255

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:222
Well:55
Vector:pOT2
Associated Gene/TranscriptEip55E-RA
Protein status:LD22255.pep: gold
Preliminary Size:1520
Sequenced Size:1313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5345 2001-01-01 Release 2 assignment
CG5345 2001-12-12 Blastp of sequenced clone
CG5345 2003-01-01 Sim4 clustering to Release 3
Eip55E 2008-04-29 Release 5.5 accounting
Eip55E 2008-08-15 Release 5.9 accounting
Eip55E 2008-12-18 5.12 accounting

Clone Sequence Records

LD22255.complete Sequence

1313 bp (1313 high quality bases) assembled on 2001-12-12

GenBank Submission: AY089545

> LD22255.complete
CCCAGACAAGATGAGCTACAGAGTCCAGCCGAGCGGCTTCGCCACCAAGT
CCATCCACTCGGGCCAGAGCCCCGACCAGTGGAAGAGTGCTGCCGTGATT
CCGCCGATATCGCTGAGCACCACCTTCAAGCAAGATGCACCGGGCGAGCA
CAGGGGCTATGAGTACTCCCGCAGTGGAAATCCCACTAGGAACGTGCTGG
AGACGTGCTTCGCCGCCTTGGATAATGCCAAATACGGCCTCACGTTCTCA
TCGGGATTGGGAGCCACCACCGCTGTGCTAACTATGCTGAGCAGCGGCGA
TCACATCATCATGGGCGACGATGTTTACGGAGGCACCAACCGTTTGATCC
GACAGGTTGCCACCCGTCTGGGAATCTCAGCCACCTTTGTGGATCCCACG
AAGTTGGATCTAATTAAAAGTTCCATCAAGCCGGAGACCAAGTTGGTGTG
GATCGAGTCACCAACTAATCCATTGGTAAAGGTAGCCGACATCGAGGCTA
TTGCGCAGCTGGTCCATGGAGTACGCGAGGATATCGTCCTGGCCGTCGAC
AACACCTTCCTGACCTCCTACTTCCAGCGACCCTTGGAGCTGGGCGCTGA
TCTGGTCTGCTACTCCCTGACCAAGTACATGAACGGTCATACGGATGTGG
TCATGGGTGGCATCACCATGAACTCGGAGAAGCTCTACAAAAGCTTGAAG
TTCCTGCAGAACGCAGTGGGCATTGTGCCGTCTCCATTCGACTGCTATCA
GGTGAACAGAAGTCTTAAGACGCTCTCGCTGCGCATGGAACAGCACCAGA
AGAATGCTCTGAAGGTTGCCAAATACCTGGAGACGAATCCGTTCGTGGAG
AAGGTGTTGCATCCCTCTTTGCCCTCCCATCCGCAGCACAAGATCGCTCT
GAAGCAGGCATACGGATACAGCGGCGTGTTCTCCTTCTACATTAAGGGCG
AGCTGAAGCACTCCTCGGCTTTCCTCAAGGCCCTCAAGGTGTTCACCCTG
GCAGAGAGTCTGGGTGGCTACGAGAGTCTGGCCGAGCTTCCATCAATAAT
GACCCATGCCTCGGTTCCAGCGGAGGATAGGAAAACTTTGGGCATCACTG
ACGGTCTAGTTCGCTTGTCCGTCGGACTGGAGGATGCCGATGATTTGATC
AAGGATCTGGAGCAGGCCCTTGAAATTGCATCGAAGGCCTAAGTTACTCG
CATCACATGTATTTTTTTTATTTTTCGCAGGAATTTGTTTAACCGAAAGC
TTATGAATTTGTATATTAATCACCCCAATAAAAGTGTTTTGTCTCAAAAA
AAAAAAAAAAAAA

LD22255.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Eip55E-RA 1386 Eip55E-RA 92..1386 1..1295 6475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14515105..14516399 1..1295 6370 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18627985..18629282 1..1298 6490 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18629184..18630481 1..1298 6490 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:24:51 has no hits.

LD22255.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:46 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14515105..14516399 1..1295 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:10 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 1..1182 11..1192 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:52 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 1..1182 11..1192 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:34 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 1..1182 11..1192 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:58 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 1..1182 11..1192 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:51 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 1..1182 11..1192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:50:39 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 92..1386 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:52 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 92..1386 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:34 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 68..1362 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:58 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 92..1386 1..1295 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:51 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
Eip55E-RA 68..1362 1..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:46 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18627985..18629279 1..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:46 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18627985..18629279 1..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:46 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18627985..18629279 1..1295 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:34 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14515490..14516784 1..1295 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:11 Download gff for LD22255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18629184..18630478 1..1295 100   Plus

LD22255.hyp Sequence

Translation from 0 to 1191

> LD22255.hyp
PDKMSYRVQPSGFATKSIHSGQSPDQWKSAAVIPPISLSTTFKQDAPGEH
RGYEYSRSGNPTRNVLETCFAALDNAKYGLTFSSGLGATTAVLTMLSSGD
HIIMGDDVYGGTNRLIRQVATRLGISATFVDPTKLDLIKSSIKPETKLVW
IESPTNPLVKVADIEAIAQLVHGVREDIVLAVDNTFLTSYFQRPLELGAD
LVCYSLTKYMNGHTDVVMGGITMNSEKLYKSLKFLQNAVGIVPSPFDCYQ
VNRSLKTLSLRMEQHQKNALKVAKYLETNPFVEKVLHPSLPSHPQHKIAL
KQAYGYSGVFSFYIKGELKHSSAFLKALKVFTLAESLGGYESLAELPSIM
THASVPAEDRKTLGITDGLVRLSVGLEDADDLIKDLEQALEIASKA*

LD22255.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Eip55E-PB 393 CG5345-PB 1..393 4..396 2001 100 Plus
Eip55E-PA 393 CG5345-PA 1..393 4..396 2001 100 Plus

LD22255.pep Sequence

Translation from 10 to 1191

> LD22255.pep
MSYRVQPSGFATKSIHSGQSPDQWKSAAVIPPISLSTTFKQDAPGEHRGY
EYSRSGNPTRNVLETCFAALDNAKYGLTFSSGLGATTAVLTMLSSGDHII
MGDDVYGGTNRLIRQVATRLGISATFVDPTKLDLIKSSIKPETKLVWIES
PTNPLVKVADIEAIAQLVHGVREDIVLAVDNTFLTSYFQRPLELGADLVC
YSLTKYMNGHTDVVMGGITMNSEKLYKSLKFLQNAVGIVPSPFDCYQVNR
SLKTLSLRMEQHQKNALKVAKYLETNPFVEKVLHPSLPSHPQHKIALKQA
YGYSGVFSFYIKGELKHSSAFLKALKVFTLAESLGGYESLAELPSIMTHA
SVPAEDRKTLGITDGLVRLSVGLEDADDLIKDLEQALEIASKA*

LD22255.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11978-PA 393 GF11978-PA 1..393 1..393 1950 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21913-PA 393 GG21913-PA 1..393 1..393 2042 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13557-PA 392 GH13557-PA 1..391 1..392 1785 83.2 Plus
Dgri\GH22532-PA 122 GH22532-PA 2..121 273..392 524 85 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Eip55E-PB 393 CG5345-PB 1..393 1..393 2001 100 Plus
Eip55E-PA 393 CG5345-PA 1..393 1..393 2001 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18710-PA 308 GI18710-PA 1..300 92..392 1347 81.7 Plus
Dmoj\GI16900-PA 71 GI16900-PA 1..48 1..48 234 85.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24795-PA 249 GL24795-PA 1..248 145..392 1153 83.9 Plus
Dper\GL24794-PA 167 GL24794-PA 1..146 1..146 678 82.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27605-PA 249 GA27605-PA 1..248 145..392 1153 83.9 Plus
Dpse\GA27604-PA 114 GA27604-PA 1..114 1..114 567 88.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21904-PA 393 GM21904-PA 1..393 1..393 2048 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11400-PA 393 GD11400-PA 1..393 1..393 2046 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15425-PA 392 GJ15425-PA 1..392 1..393 1788 83.2 Plus
Dvir\GJ23091-PA 393 GJ23091-PA 1..393 1..393 1740 79.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19674-PA 393 GK19674-PA 1..393 1..393 1823 84.2 Plus
Dwil\GK12336-PA 393 GK12336-PA 1..393 1..393 1711 78.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11987-PA 393 GE11987-PA 1..393 1..393 2044 96.9 Plus