Clone LD22345 Report

Search the DGRC for LD22345

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:223
Well:45
Vector:pOT2
Associated Gene/TranscriptCG6845-RE
Protein status:LD22345.pep: gold
Sequenced Size:2293

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6845 2002-12-10 Blastp of sequenced clone
CG6845 2008-04-29 Release 5.5 accounting
CG6845 2008-08-15 Release 5.9 accounting
CG6845 2008-12-18 5.12 accounting

Clone Sequence Records

LD22345.complete Sequence

2293 bp (2293 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003264

> LD22345.complete
TTGTGTTAGACTTTACAAATAAATTACAAAGAAATCGATCAAAATAAAAT
CATGGAAGAAAGTCAGCCAAGGTATGGCGCTATGTGGACATTCAAGCTGG
TGGCACCATACGTAATTGGCGGCTACCTATGCGGCCTCGCGGTAACGCTC
GCATGGAACTGGTGGCAGCTGGGCCACTTGGTTCTGGGTCTTAATCTCAC
CTTCGCGATTCCGGTGGCGCTTGTTCTGGCGGTCTTTTACAGCAGGCCCG
TAAGGTGCATTGTGACTTTGGCCCTTCCCTCGCTGTGCAGCTCTCGGGGA
AGGGCGTTCCTCATCAGCCTTGCCTTTGTTATTGCCGCAGTTGGGCCTAC
GGCGAACATTCTAGCCAATTTGAAGGTGATGCTCCGCAGCCTCGCTTGCG
GACAGGAGCTATTGCGTCAGGCGCTTGGCCAGATGTTGGACGTAATACTG
GAGCCGGTGAATGCCATCCAGCTAGCGGTGGATCTCTTGATGCGGGAAGT
GCGTCGGGTGCTCAAGCTGGCCATGGTAGTGCTGTTACGCATTCAGGACC
AATTGATCGCAATTAGTGAGTATCTGTATTAAAAAGTGCTGCAGTTTTCT
CTGCTGATTCATTTTTGTAGTTAAAACCCTGAAGAACTGCGCCGCTTGGC
TGAAATCCATCGTAGACCTGTGCAACACAGAAATGGGCACTCCCTGGGCA
CGTTGCAAAAAGACGGCGCATCACGCAATGATCAGGTGCCAGTCAAAGAT
GGGCGTATTCAAGGCGCTATGCCATGCTGCAAAGCTGTTTCTGGCCCTCT
GCTATCCAGCCAAGATCATCGATGTGTTTTGCAGCGGTTACTGGGATCTC
AGCTGGGGTCTTCTTGATAAAATCGCAGAACGCTACCGTGAATTTGTGCG
GCACATCGAGGAAATGTTTGATGCCAATATCACTTTTGAGCACGAATTTT
TCTTCGATACAAACTCTTCAAAGAGCCTGACGGACGTGGGGGAGGAAATT
TTACAGGATATTAACAAGCGTCTGTCGTCGTTTATCTTCTTGAGCAGCTT
TGTGGACATTCTCTGCTGGGTCATGGTGGTTACTGTATTTTTTAAGTAGG
CAAGAGCTTAATCATCTTATTAATTTAGTGTTGGTGATGCCTCAATTGTT
CCCATCAGAGCCACCATCTTCTACCTTCGATATATGCACAGCCGGCAATT
TCAGAATGTGTTCTTGACAAAGATACTAAGTGATATCGACCGGCGGCACG
AAAAGCACGGTTACGATCCACTGCTACCCCTTCATCAGCTTGAAAGGGCA
AAGTATATGAAGCTTACTAGCTTGCGTTTGACTTTGTTTGAGTTCGTGTC
CATTGTTGAGAACGCCTGTTTCATGGCCACAACCTGCTTGCAGTTGTTTG
CGATTTGCTTTCTGGATTACGGGCTGTTCTGGCTGTTGGCAACTATATCC
CTCCATGGCCACCAAGAGACTGGGCTGGAGGTGCCCGCTTACGTCGATCT
AGAGATTAAGGGTGGGGGCTTTGTGGCGGATGTCATGCGGGGAATCGCTA
ATGCCTTTCGACCCTTGACGCAAAAAAGCATTTTAGACGTGAATCCTTGC
CTCCCGCTGCCCGTGAAACCTGATTATGCGGAGTATCTAATTATATTATT
ACTCTGTCTGCTCGCTTGGCTGATCCTTTTGGCCGAGCCGTATATTTTGC
GTACTCGCCATCTTATAATGGCCCACTTTTATCCAAAACGCGCCAAGGAA
AGAGGCATGTTTCTGTACAACATGATTTCCGAAGATAGAACAAGCATTTT
TAAGTTTATCCGCCGCAGAAAGCGTAATGAGTTTAACCACACACGGAATG
TGAAGCACACCAGAAACTACACTTGGCTGAACAATAGATTCTCCTGTTTA
ATGTGCATGTGCTCCTGCTGCTCATCCTGTCAAAGCACTGAGAGGTGCAC
CATATGTGGCCGATCTCTGACTCTTTCAAATCGTAACCCCTGCGACACTC
CTGGATGCAAAGGGGTTTATTGCGGTAAATGCTTTGAAAAGTCACACAAT
AAGTGTTGTCTGTGCAATCGACCAGTGGATTATGGTGATTTTTCCGACGT
TACTGAAGTAGACGACTCTTCGGACTATTCTGAAAAAGAGTCTTTTAGCG
AAAGGCAGTACAGGAAGACCTGTGGAGGACAACGCTAGCAACGAGGGAAA
AACAGTTAAACATAGAGGTTGTGAGCGCATACACGTTATGCAGATAGCTC
AGAAATATAATATTTCCACCTATTAAAAAAAAAAAAAAAAAAA

LD22345.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6845-RE 2398 CG6845-RE 35..2311 1..2277 11385 100 Plus
CG6845.a 1682 CG6845.a 499..1618 1158..2277 5600 100 Plus
CG6845-RC 2223 CG6845-RC 1041..2159 1159..2277 5595 100 Plus
CG6845-RC 2223 CG6845-RC 1..565 1..565 2825 100 Plus
CG6845.a 1682 CG6845.a 1..499 577..1075 2495 100 Plus
CG6845-RC 2223 CG6845-RC 566..1040 621..1095 2375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 146732..147361 253..882 3150 100 Plus
chr3L 24539361 chr3L 147896..148375 1311..1790 2400 100 Plus
chr3L 24539361 chr3L 147415..147845 882..1312 2155 100 Plus
chr3L 24539361 chr3L 146415..146670 1..256 1280 100 Plus
chr3L 24539361 chr3L 148424..148607 1791..1974 920 100 Plus
chr3L 24539361 chr3L 148857..149018 2113..2274 810 100 Plus
chr3L 24539361 chr3L 148666..148803 1975..2112 690 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 146770..147399 253..882 3150 100 Plus
3L 28110227 3L 147934..148413 1311..1790 2400 100 Plus
3L 28110227 3L 147453..147883 882..1312 2155 100 Plus
3L 28110227 3L 146453..146708 1..256 1280 100 Plus
3L 28110227 3L 148462..148645 1791..1974 920 100 Plus
3L 28110227 3L 148895..149059 2113..2277 825 100 Plus
3L 28110227 3L 148704..148841 1975..2112 690 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 146770..147399 253..882 3150 100 Plus
3L 28103327 3L 147934..148413 1311..1790 2400 100 Plus
3L 28103327 3L 147453..147883 882..1312 2155 100 Plus
3L 28103327 3L 146453..146708 1..256 1280 100 Plus
3L 28103327 3L 148462..148645 1791..1974 920 100 Plus
3L 28103327 3L 148895..149059 2113..2277 825 100 Plus
3L 28103327 3L 148704..148841 1975..2112 690 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:53:10 has no hits.

LD22345.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:54:42 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 146415..146668 1..254 100 -> Plus
chr3L 146734..147360 255..881 100 -> Plus
chr3L 147415..147845 882..1312 100 -> Plus
chr3L 147898..148375 1313..1790 100 -> Plus
chr3L 148424..148607 1791..1974 100 -> Plus
chr3L 148666..148803 1975..2112 100 -> Plus
chr3L 148857..149018 2113..2274 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:21 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RC 990..2019 1159..2188 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:49 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RC 990..2019 1159..2188 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:45:19 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RC 990..2019 1159..2188 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:14 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RC 990..2019 1159..2188 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:19 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RC 990..2019 1159..2188 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:19:44 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RE 1..2274 1..2274 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:49 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RE 1..2274 1..2274 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:19 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RE 21..2294 1..2274 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:15 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RE 1..2274 1..2274 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:19 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6845-RE 21..2294 1..2274 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:42 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
3L 148462..148645 1791..1974 100 -> Plus
3L 148704..148841 1975..2112 100 -> Plus
3L 148895..149056 2113..2274 100   Plus
3L 146453..146706 1..254 100 -> Plus
3L 146772..147398 255..881 100 -> Plus
3L 147453..147883 882..1312 100 -> Plus
3L 147936..148413 1313..1790 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:42 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
3L 148462..148645 1791..1974 100 -> Plus
3L 148704..148841 1975..2112 100 -> Plus
3L 148895..149056 2113..2274 100   Plus
3L 146453..146706 1..254 100 -> Plus
3L 146772..147398 255..881 100 -> Plus
3L 147453..147883 882..1312 100 -> Plus
3L 147936..148413 1313..1790 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:42 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
3L 148462..148645 1791..1974 100 -> Plus
3L 148704..148841 1975..2112 100 -> Plus
3L 148895..149056 2113..2274 100   Plus
3L 146453..146706 1..254 100 -> Plus
3L 146772..147398 255..881 100 -> Plus
3L 147453..147883 882..1312 100 -> Plus
3L 147936..148413 1313..1790 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:19 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 148462..148645 1791..1974 100 -> Plus
arm_3L 148704..148841 1975..2112 100 -> Plus
arm_3L 148895..149056 2113..2274 100   Plus
arm_3L 146453..146706 1..254 100 -> Plus
arm_3L 146772..147398 255..881 100 -> Plus
arm_3L 147453..147883 882..1312 100 -> Plus
arm_3L 147936..148413 1313..1790 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:12 Download gff for LD22345.complete
Subject Subject Range Query Range Percent Splice Strand
3L 146453..146706 1..254 100 -> Plus
3L 146772..147398 255..881 100 -> Plus
3L 147453..147883 882..1312 100 -> Plus
3L 147936..148413 1313..1790 100 -> Plus
3L 148462..148645 1791..1974 100 -> Plus
3L 148704..148841 1975..2112 100 -> Plus
3L 148895..149056 2113..2274 100   Plus

LD22345.hyp Sequence

Translation from 1183 to 2187

> LD22345.hyp
MHSRQFQNVFLTKILSDIDRRHEKHGYDPLLPLHQLERAKYMKLTSLRLT
LFEFVSIVENACFMATTCLQLFAICFLDYGLFWLLATISLHGHQETGLEV
PAYVDLEIKGGGFVADVMRGIANAFRPLTQKSILDVNPCLPLPVKPDYAE
YLIILLLCLLAWLILLAEPYILRTRHLIMAHFYPKRAKERGMFLYNMISE
DRTSIFKFIRRRKRNEFNHTRNVKHTRNYTWLNNRFSCLMCMCSCCSSCQ
STERCTICGRSLTLSNRNPCDTPGCKGVYCGKCFEKSHNKCCLCNRPVDY
GDFSDVTEVDDSSDYSEKESFSERQYRKTCGGQR*

LD22345.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6845-PE 334 CG6845-PE 1..334 1..334 1818 100 Plus
CG6845-PC 672 CG6845-PC 339..672 1..334 1818 100 Plus
CG6845-PD 303 CG6845-PD 172..303 203..334 758 100 Plus
CG32320-PD 767 CG32320-PD 430..751 6..319 529 35.5 Plus
snky-PB 715 CG11281-PB 405..691 5..294 198 26.3 Plus

LD22345.pep Sequence

Translation from 1183 to 2187

> LD22345.pep
MHSRQFQNVFLTKILSDIDRRHEKHGYDPLLPLHQLERAKYMKLTSLRLT
LFEFVSIVENACFMATTCLQLFAICFLDYGLFWLLATISLHGHQETGLEV
PAYVDLEIKGGGFVADVMRGIANAFRPLTQKSILDVNPCLPLPVKPDYAE
YLIILLLCLLAWLILLAEPYILRTRHLIMAHFYPKRAKERGMFLYNMISE
DRTSIFKFIRRRKRNEFNHTRNVKHTRNYTWLNNRFSCLMCMCSCCSSCQ
STERCTICGRSLTLSNRNPCDTPGCKGVYCGKCFEKSHNKCCLCNRPVDY
GDFSDVTEVDDSSDYSEKESFSERQYRKTCGGQR*

LD22345.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24881-PA 692 GF24881-PA 354..683 1..331 1083 59.6 Plus
Dana\GF20092-PA 384 GF20092-PA 257..374 89..207 219 39.2 Plus
Dana\GF24032-PA 718 GF24032-PA 401..688 5..294 173 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14692-PA 672 GG14692-PA 339..672 1..334 1628 92.8 Plus
Dere\GG15629-PA 714 GG15629-PA 401..709 1..311 153 24.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15478-PA 659 GH15478-PA 344..648 1..332 832 49.1 Plus
Dgri\GH15479-PA 770 GH15479-PA 459..755 1..323 537 36.7 Plus
Dgri\GH24995-PA 242 GH24995-PA 1..227 71..323 484 39.1 Plus
Dgri\GH14425-PA 722 GH14425-PA 406..714 5..314 149 22.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6845-PE 334 CG6845-PE 1..334 1..334 1818 100 Plus
CG6845-PC 672 CG6845-PC 339..672 1..334 1818 100 Plus
CG6845-PD 303 CG6845-PD 172..303 203..334 758 100 Plus
CG32320-PD 767 CG32320-PD 430..751 6..319 529 35.5 Plus
snky-PB 715 CG11281-PB 405..691 5..294 198 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16754-PA 684 GI16754-PA 344..676 1..334 837 47 Plus
Dmoj\GI16755-PA 629 GI16755-PA 344..629 1..310 455 32.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16050-PA 273 GL16050-PA 1..267 64..334 760 52 Plus
Dper\GL14510-PA 257 GL14510-PA 1..249 84..332 711 51.8 Plus
Dper\GL14143-PA 253 GL14143-PA 1..245 88..332 698 51.4 Plus
Dper\GL22505-PA 770 GL22505-PA 399..596 3..203 419 41.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25497-PA 491 GA25497-PA 152..485 1..334 932 52.1 Plus
Dpse\GA16830-PA 664 GA16830-PA 239..539 3..310 586 39 Plus
Dpse\GA10888-PA 713 GA10888-PA 398..703 5..313 165 25.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14310-PA 672 GM14310-PA 339..672 1..334 1635 96.4 Plus
Dsec\GM14407-PA 378 GM14407-PA 272..374 100..204 195 40 Plus
Dsec\GM25404-PA 550 GM25404-PA 240..526 5..294 171 26.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13546-PA 672 GD13546-PA 339..672 1..334 1769 97 Plus
Dsim\GD13616-PA 305 GD13616-PA 199..301 100..204 199 41 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12498-PA 680 GJ12498-PA 344..672 1..334 816 53 Plus
Dvir\GJ12499-PA 111 GJ12499-PA 3..104 101..202 259 43.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21036-PA 307 GK21036-PA 1..297 1..327 837 49.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21054-PA 672 GE21054-PA 339..672 1..334 1515 89.8 Plus
Dyak\GE21151-PA 475 GE21151-PA 224..464 1..295 381 32.4 Plus