Clone LD22358 Report

Search the DGRC for LD22358

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:223
Well:58
Vector:pOT2
Associated Gene/TranscriptGp210-RA
Protein status:LD22358.pep: gold
Preliminary Size:5996
Sequenced Size:5957

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7897 2001-01-01 Release 2 assignment
CG7897 2003-01-01 Sim4 clustering to Release 3
CG7897 2003-07-07 Blastp of sequenced clone
gp210 2008-04-29 Release 5.5 accounting
gp210 2008-08-15 Release 5.9 accounting
gp210 2008-12-18 5.12 accounting

Clone Sequence Records

LD22358.complete Sequence

5957 bp (5957 high quality bases) assembled on 2003-07-07

GenBank Submission: BT011113

> LD22358.complete
CACGATGGATTCTATTCTTTGCATGATTTTGCTGATTTTGGTAAGAAATC
ATGCTTCTGAGGCAGCTAGGTTGAACCACCCGCGTGTGTTACTACCAATA
TTCGAAGACAAGGCAATAAACTTTACCCTGGAAGTCGACGAGCCGAACTG
CTACAAATGGTCGTCCTCACGCCAGGACTTGATATCTGTCATGCCCATTT
ACAAGGGCTTCAGCGAATGTGCATACCAGGCGGTGGTGACAGTCCGCACT
CACGATCGTCGGAGGAACACTGCAATCGTCTTCGCCGAGGAAGTACAAAC
GGGCGAGACGCTGCGTTCCGACGTGATTGTGGATGTCATTGCTAGTCTAA
ATGTGCGCACCGCCACTCGACAACTTTACCTGGAGGAGGCGCCCGCCATG
TTCGAGCTGCACGCCTTTGATGAACAAGGCAACGAGTTTTTTACCTTGGA
GGGAATCGAGTTTGACTGGGAGATTTTGGAACCCGGTAGCAAAAGGCCCA
CCGCAATGCGATACCTCACGTTCACGGACAGTCCGTACCACACTGTACCG
CCCACCATTGAAAAGTTTGAAGCCGACGGCAAGAAGGGGCACATGATCCT
CCTTGAGGGCATTAATACTGGCACCGCCAAGGTGACCATCGCCATGCCTC
AGGCCGAGTACAAGCATGTGCGGCCAGTTGAGGTGTACATCAGCGTTCTT
GCAAACATTATAATTGAGCCTTCCGAAGTCACCATAATGGCTGGAGACTC
CGTCTCATTTCGCATTCTGCAGCTGAAGATGGACCGACTGCACGTTATAG
ACAACAATCAGTATTATTTGGAGGTGGAGGACTCCAGCATTGCATACCTT
CGTGGAAACAGTGCCACCGGAGCGGCTCTGGGTCGCACCCAGGTCTTTCT
GCGAGACCGCAACATGGCGGACTCTGATGAGGTCCAAAAGGGACCCAGCG
CTCTATTGACTGTGGCATATCCGAATAGGTTGTCCATCAGTCTGTTGCCC
CATCTCAATTGGGTGACAGTACAAGGCGAGCATCACGCTATAGCATTGGA
TCTTTTTGCTGCCGACGGTCAGAAGATCACAATGGGCACTAAATATTCAA
TCAACTCAGAGGTGGATGAATCCTTTTTCGCCATTGTTGATCGTACTCGC
AACGGAAGCCGCCTTTTCGGTCAAGCAAAAAAAGAGGGAATCACTCAGGT
GTATGGCTCATATAAAGACCTGTCGGTACAAGCTGAGCTTCAGATATTTG
AGGAGCTTCAGTTAGCGCCAACCAAGGTGGTGTTGCCATACGATCCTAAC
AGCTTAAAACCTTTAAAGCTGCAGTTTCATGCATCTGGCGGAGATAACAA
CTACGCTTGGTTCTCCGGAAATCCACAGGTGATCCAGATTGACACCCAGG
GCCAAGCCACAACTGAAATCCGCGACGTGAAATCCGCTTACGTGAACCAG
GAGGTACTGAAAGATGGTGGTAAACTGACCGCCCACACCACCGTCAAGGT
GGCTCTATCCAAGAACCAGAAAATTTCCCGTGTGGCACATATCTACTTTC
TCCCCCCTGAGCGCCTTCAGATCACGCGGAGCAACTTTGAGACCGCCCTG
AAGGACTTCGTACACGTGCATGTGGGCGTATACGCTCGAATAAATAATTC
AGAGGTTCCCTACACAAGTTGTGATAATCTTCACTTCCAACTAGACTTCA
GCCAGCCCATTCTGCAGTTGGAGGGTAATGAAGGGGCGGAGGCTGCTCAC
GAGGCGTGTCATGTGCTTCGGTTGCGGGCCACCGCTGTGGGCACCACCTC
GCTACGCGTTTCCTATATGTATATGGACAAAGTGCTTTACGACATTATTG
ATTTGTATGTCTTTGAGCCATTAGTCGTGCTAAATCCAATAGAAAACGAG
GTTGTTCTTCCCGTTGGGTCATCCCGTAATATAATTTATGCTAATGGGCC
GCAGCGCAGTTTTACGGTGGCAGCAGAAATCATACAATCTACCGCTTTTG
ATGAAAAAATATTAAAAGTGTCTAAATTAGAGTTCGACACGCAAAATTTG
ATAACTGCGTTCACCGTGCTGTGTCGTGAGCTGGGCGAGACGCAGTTCAC
TTACCGAGTGCATAATAGCCTTCCCACCTCAAGCTTTGCCTTATATCAAT
CGGAGGTGACCACAAAGGTGCATTGCGTCCGTCCTCGCTTCCTAAAGCTC
TACGCTCGCCATAACCTGCGTGACTCCTGCCCCCTGGAGAAGCGCACCTC
GTTATTATTCCTGAAAGATCCAGAGAATAAAATTGAAATTGAAATCGAGG
TACACGATTCAAATAATCGTAGGCTCATGAATATCAGCTCACTAGGGCTT
GACTGGGAGTTTTCCGCTGGTGAAGAGCGATACCAGAAGAACATTATCCC
GCACCGTCAGATTTCTGAATTGGAGTTCAATCATGGAGTTACCCTGCCGA
GTCGCGACCTTCTTGTCTTGACATTGAGTGAAGTGGCGACCAACTTCCGC
ATTAAGGGAACGGTGTCCCAGTATAACGACAAGCTACTTGCCCAACACGG
TATTCACGCGGAGCGTCCTCCCTTTGGAATCAAAAATCCTCAGACGGGTT
TAATATACACTCCTCTGATTGAAAATGAAATTAGGTTACACGCCGTTAAC
AGTACGTTGTTGCCAAAAGATTACATGAGCATTTTTCTGGCCTCGGGCTA
TAGCGAGCGAATACCAATCGCCCAGGGCAGCGGCTACTTGCAGCTGGAGC
TCTCCGAGGCAGGTATTGTTCAAGTTGAATACAATGAAAATACCCGAATC
CTAGTGCTGACGCCACTACGCCTTGGCCATGTTCGTCTTGAGTTGACCGA
CCGTTGCTTAATGAACGAACCCAGCCATTTATCCATCTCTGTGGTTGGAA
TCGGGGCTATTGAGGTAGTTAGCATGGACCGGCTAGAACGCACTACTAGA
ATCGAAGCTATCGTAAGGCTTTTTGATACCAATGATAATCTCTTGCTTGT
GGACCAGAGCAAACTTAGTGCGTACGATTTATCCGAGGTTGTCGCAGACC
AAAGTATACTGAGCGTGCGCCTAGGCGAGCAGGAAAATGTAGGACCCGGA
GAGATCCGCTACACAATTACGGGCAACCAAGTCGGCGAAACCAAAATATT
ATTTCAGTCTGGCAAGGGCATTTATAAGGTGGCAAGCGACCCTCTAAATA
TTCAAGTTTTCGCTCCAATTCGTCTCTTTCCGCGCGACTCAACTCTAGTG
GTGGGCAGCAGTATACAGGTGTACTTCCATGGAGGACCGCACCCAAATAC
CAACATGATAATCTCAGTGGAGAAGGAGCAAGTAGCAACTATAAGCTCTA
CTGTTGTTACGGCCCATAAGCTGGGGACCACCAAAATCGTAGGCAAATGT
CTTCTAAAAAACCCTGTCACTGGAAAGGACGAGGTGGTCTCCCAGGACTC
GGTGGAGGTACACGTAGTGGCTCTGAAAGGAGTACAGATTCGAACGCCTT
TGGTCCGCATTCATAGTGGGGCCGTAATGCCAGCTACCTTGTGGGGTCTT
TCTGATTTGTCGCCCATGATTTTGGGTACCTTGCAAAACACTAAAATCTC
CTGGAAAGTAAGCCAACCACAGGTGGTTGAGATATTTAATGTATTTACAA
CTGCAGGAATAGAGTATCAGAGTGGGGATTTGATATCAGTTAGAGTAAGA
GCCCTCAATCCTGGAAAGGCAACAATCACGGCATCGGTTACTTTGGCAGA
CGGAACAATACTGCCACCAGCTACAGTGGACTTACAAGTTTTTAAAACAT
TGGAGCTGGTAACACCAAATGCCATTAAAATGGATTCAATTTTGGCTGCG
CCGCGAAGCATTCTTCAGCTTAAATCTAATATGGATAATGTGGTCTATAA
ACTGGACGATCGAAGTAATGGCATTGTCAGTGTAACACCAGATGGCCTTG
TACACACAAAGGACTCTCTTGGCCGTGATCTGATAATTGCGACGACCGCG
GACCAATCCCTACCCATAGGAATTGAAGTTAAAAATGTGCAATACATTTT
AGTAACGCTGATGCCAATCCTCAAATTAAGAGAGCTTGAACACAAAATCC
CGCGTGGAATGAACTTTGTGTTTAAAGTGTCGCTTCACGACAATTTAGGC
AACGAGCTGTCGCACAACATCGAGGATTTCAACGGACTACGATATGAACT
CGGCAACAAAGATGATGTGGATGTCCAGATAGATAATAATCTAACGTTTG
CGTTGAACTTGATGCGAGAGACCAACAATGTCATTGGCATTAGTCTAAAG
GACTCAACGGGTGTCAAGCACTCCATGGACTTCATAAAGCTATCTGTTGT
CGAGTCGGACAATTTATTTCCCACCAAGACTATTTTCTCTGTTGGCGACA
TAATTTGTTTCGATTCACCTTTAACGTTGTCATCGACTTGGCGAAGCTCC
AATGAGCAGATAGTTTACATTAATAAGCATACAGGCATTGCCCAGGTGTT
AAGTCATCGACTAAAGCCGGGAGAAAAGATTGAGATCACTAATGGCGACG
AGACAAAACGCGGCGGATTTTTAAAGTATGACCTGGAAGTTCGCGAATCG
GATACGATTTTGTTTGTCAAATCAGTGGACACATTTAGCGGACCAGAATA
TCGGGGACAACTAGTTATTCGCAACCATTTGCAGTCCGAAAAGTATAGTA
ACCTTATTGCACAAAATGTTTCAAAATGTGCCAGGGAATTGGGAAGCGTA
CCGGTGAATTTCTTTACATGTCGCCTGGCGGCCAAGGATGCTCTGGGACG
TAATTTACTAAAAATGTATAAAGTTGATGCATTGTTTGAGCCTAGCATCG
GGCAGTACTCTTGTCGACTACAGTTGCTCACCGGTTTTATTGAGTTGCTA
AGTATTGTCAAGACACACGACGTCTACCTGGAGCTGGAGGCAGTGGTGGC
CAAAGGAGTTTCCGATAAAATGTCATTGAAATTAGTACCCGGTATCAAAG
TTTTTCCTGAATCAGTGCGTGTCACCGACCTAAAGCCACATGAAATTCAT
ATAAGCGGACTAGACAAGGCGTTGCTCAAGGTTCAGGTGAAGCCATCGGA
TTCAAAATACTTTGCTGTGGACTTTATCGAGCATGGACATGGTTTAAGCA
AATATCGTTTGGAACTGTTTGATGACCTTCCGCTGGATGAAAACTTTTAC
ATTTTAGTAGTTTCACCGGACACCAAACAAAGCATCGAGGTGCCCATTAT
CGGCAATACCATGCTGGCCCCGAAGTGCACTGACCGCCGATATGGCGGTC
CTCTTGTGTATCGGATACTGGAGAATTTGGGCTTCGTCCTGACTACGACT
GTTATTGTAATCATTTCCATATGGGTATACATGTCTTGCTTTCAAACTCA
GGGCGTCACGCAAGTGAATTTTGAAGCATTCAAGAAAGGGAAGTCGAGGA
CGGAGTTGATGCAACAATCTGGAAGAAGCAGTCAAGACGATACATTTGGT
GACTCCTTTAACGTACGTAACTTTTCTCCGGATCGGCGAAGACCCCCATC
GAATGCTTTGTCGGAGTCGTATATTTATGGACACCCTCGTTTGAACTCTT
CAAACAGATCAGAAAACTCGACTAGCTTTAGTTAGTTGGATACGTAAATT
AAAGACTGTCAGCAAACTGACTCGGGTTTTTTTGTAAAATAATATAAGAT
AAACTCAGGCATTTGTAATACTTATATGCAGCTTCTGTCCTTTAAAGTAA
ATTCTTCTCATCCTGACGCCAGAAAAATAGTTTGTTAGGATAAGTCAATA
TTTGTTATGGAATAGAAGAATTAAAAAAAGAGTGAGATTGCAACGTCACA
AGTTTGTCAGATAAGCTTACGTTTGTTCTACGTTTCCGCAAAACACAACT
AGTTTTTAAATAAACATCAATTAAAATGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

LD22358.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
gp210-RA 6465 gp210-RA 64..5992 1..5930 29610 99.9 Plus
gp210.a 6037 gp210.a 37..5959 1..5930 29495 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1649979..1651346 1220..2587 6840 100 Plus
chr2R 21145070 chr2R 1648518..1649578 159..1219 5305 100 Plus
chr2R 21145070 chr2R 1651406..1652156 2588..3338 3755 100 Plus
chr2R 21145070 chr2R 1659455..1659881 5501..5928 2090 99.8 Plus
chr2R 21145070 chr2R 1652216..1652534 3339..3657 1595 100 Plus
chr2R 21145070 chr2R 1653325..1653588 3989..4252 1320 100 Plus
chr2R 21145070 chr2R 1655005..1655239 4706..4940 1175 100 Plus
chr2R 21145070 chr2R 1653063..1653265 3787..3989 1015 100 Plus
chr2R 21145070 chr2R 1648289..1648449 1..161 805 100 Plus
chr2R 21145070 chr2R 1656726..1656883 5085..5242 790 100 Plus
chr2R 21145070 chr2R 1655297..1655447 4938..5088 755 100 Plus
chr2R 21145070 chr2R 1652860..1653004 3644..3788 710 99.3 Plus
chr2R 21145070 chr2R 1657853..1657990 5238..5375 690 100 Plus
chr2R 21145070 chr2R 1653837..1653963 4252..4378 635 100 Plus
chr2R 21145070 chr2R 1654665..1654791 4480..4606 635 100 Plus
chr2R 21145070 chr2R 1654074..1654182 4377..4485 545 100 Plus
chr2R 21145070 chr2R 1654847..1654946 4606..4705 500 100 Plus
chr2R 21145070 chr2R 1659303..1659379 5425..5501 385 100 Plus
chr2R 21145070 chr2R 1658190..1658241 5375..5426 260 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5762594..5763961 1220..2587 6840 100 Plus
2R 25286936 2R 5761133..5762193 159..1219 5305 100 Plus
2R 25286936 2R 5764021..5764771 2588..3338 3755 100 Plus
2R 25286936 2R 5772066..5772494 5501..5930 2100 99.8 Plus
2R 25286936 2R 5764831..5765149 3339..3657 1595 100 Plus
2R 25286936 2R 5765940..5766203 3989..4252 1320 100 Plus
2R 25286936 2R 5767620..5767854 4706..4940 1175 100 Plus
2R 25286936 2R 5765678..5765880 3787..3989 1015 100 Plus
2R 25286936 2R 5760904..5761064 1..161 805 100 Plus
2R 25286936 2R 5769341..5769498 5085..5242 790 100 Plus
2R 25286936 2R 5767912..5768062 4938..5088 755 100 Plus
2R 25286936 2R 5765475..5765619 3644..3788 710 99.3 Plus
2R 25286936 2R 5770468..5770605 5238..5375 690 100 Plus
2R 25286936 2R 5766452..5766578 4252..4378 635 100 Plus
2R 25286936 2R 5767280..5767406 4480..4606 635 100 Plus
2R 25286936 2R 5766689..5766797 4377..4485 545 100 Plus
2R 25286936 2R 5767462..5767561 4606..4705 500 100 Plus
2R 25286936 2R 5771914..5771990 5425..5501 385 100 Plus
2R 25286936 2R 5770805..5770856 5375..5426 260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5763793..5765160 1220..2587 6840 100 Plus
2R 25260384 2R 5762332..5763392 159..1219 5305 100 Plus
2R 25260384 2R 5765220..5765970 2588..3338 3755 100 Plus
2R 25260384 2R 5773265..5773693 5501..5930 2110 99.7 Plus
2R 25260384 2R 5766030..5766348 3339..3657 1595 100 Plus
2R 25260384 2R 5767139..5767402 3989..4252 1320 100 Plus
2R 25260384 2R 5768819..5769053 4706..4940 1175 100 Plus
2R 25260384 2R 5766877..5767079 3787..3989 1015 100 Plus
2R 25260384 2R 5762103..5762263 1..161 805 100 Plus
2R 25260384 2R 5770540..5770697 5085..5242 790 100 Plus
2R 25260384 2R 5769111..5769261 4938..5088 755 100 Plus
2R 25260384 2R 5766674..5766818 3644..3788 710 99.3 Plus
2R 25260384 2R 5771667..5771804 5238..5375 690 100 Plus
2R 25260384 2R 5768479..5768605 4480..4606 635 100 Plus
2R 25260384 2R 5767651..5767777 4252..4378 635 100 Plus
2R 25260384 2R 5767888..5767996 4377..4485 545 100 Plus
2R 25260384 2R 5768661..5768760 4606..4705 500 100 Plus
2R 25260384 2R 5773113..5773189 5425..5501 385 100 Plus
2R 25260384 2R 5772004..5772055 5375..5426 260 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:34:47 has no hits.

LD22358.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:35:48 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1652873..1653004 3657..3788 100 -> Plus
chr2R 1656728..1656880 5087..5239 100 -> Plus
chr2R 1657855..1657990 5240..5375 100 -> Plus
chr2R 1658191..1658241 5376..5426 100 -> Plus
chr2R 1659305..1659379 5427..5501 100 -> Plus
chr2R 1648289..1648447 1..159 100 -> Plus
chr2R 1648519..1649578 160..1219 100 -> Plus
chr2R 1649979..1651346 1220..2587 100 -> Plus
chr2R 1651406..1652156 2588..3338 100 -> Plus
chr2R 1652216..1652533 3339..3656 100 -> Plus
chr2R 1653065..1653264 3789..3988 100 -> Plus
chr2R 1653325..1653588 3989..4252 100 -> Plus
chr2R 1653838..1653963 4253..4378 100 -> Plus
chr2R 1654076..1654181 4379..4484 100 -> Plus
chr2R 1654670..1654791 4485..4606 100 -> Plus
chr2R 1654848..1654946 4607..4705 100 -> Plus
chr2R 1655005..1655238 4706..4939 100 -> Plus
chr2R 1655299..1655445 4940..5086 100 -> Plus
chr2R 1659456..1659881 5502..5928 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:16:03 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
gp210-RA 1..5631 5..5635 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:52:54 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
gp210-RA 1..5631 5..5635 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:21 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
Gp210-RA 1..5631 5..5635 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:21:29 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
gp210-RA 1..5631 5..5635 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:02 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
Gp210-RA 1..5631 5..5635 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:16:02 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
gp210-RA 37..5963 1..5928 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:52:54 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
gp210-RA 37..5963 1..5928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:21 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
Gp210-RA 43..5969 1..5928 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:21:29 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
gp210-RA 37..5963 1..5928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:02 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
Gp210-RA 43..5969 1..5928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:48 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5767463..5767561 4607..4705 100 -> Plus
2R 5767620..5767853 4706..4939 100 -> Plus
2R 5767914..5768060 4940..5086 100 -> Plus
2R 5769343..5769495 5087..5239 100 -> Plus
2R 5770470..5770605 5240..5375 100 -> Plus
2R 5765940..5766203 3989..4252 100 -> Plus
2R 5770806..5770856 5376..5426 100 -> Plus
2R 5771916..5771990 5427..5501 100 -> Plus
2R 5766453..5766578 4253..4378 100 -> Plus
2R 5760904..5761062 1..159 100 -> Plus
2R 5766691..5766796 4379..4484 100 -> Plus
2R 5761134..5762193 160..1219 100 -> Plus
2R 5762594..5763961 1220..2587 100 -> Plus
2R 5764021..5764771 2588..3338 100 -> Plus
2R 5764831..5765148 3339..3656 100 -> Plus
2R 5765488..5765619 3657..3788 100 -> Plus
2R 5765680..5765879 3789..3988 100 -> Plus
2R 5767285..5767406 4485..4606 100 -> Plus
2R 5772067..5772492 5502..5928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:48 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5767463..5767561 4607..4705 100 -> Plus
2R 5767620..5767853 4706..4939 100 -> Plus
2R 5767914..5768060 4940..5086 100 -> Plus
2R 5769343..5769495 5087..5239 100 -> Plus
2R 5770470..5770605 5240..5375 100 -> Plus
2R 5765940..5766203 3989..4252 100 -> Plus
2R 5770806..5770856 5376..5426 100 -> Plus
2R 5771916..5771990 5427..5501 100 -> Plus
2R 5766453..5766578 4253..4378 100 -> Plus
2R 5760904..5761062 1..159 100 -> Plus
2R 5766691..5766796 4379..4484 100 -> Plus
2R 5761134..5762193 160..1219 100 -> Plus
2R 5762594..5763961 1220..2587 100 -> Plus
2R 5764021..5764771 2588..3338 100 -> Plus
2R 5764831..5765148 3339..3656 100 -> Plus
2R 5765488..5765619 3657..3788 100 -> Plus
2R 5765680..5765879 3789..3988 100 -> Plus
2R 5767285..5767406 4485..4606 100 -> Plus
2R 5772067..5772492 5502..5928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:48 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5767463..5767561 4607..4705 100 -> Plus
2R 5767620..5767853 4706..4939 100 -> Plus
2R 5767914..5768060 4940..5086 100 -> Plus
2R 5769343..5769495 5087..5239 100 -> Plus
2R 5770470..5770605 5240..5375 100 -> Plus
2R 5765940..5766203 3989..4252 100 -> Plus
2R 5770806..5770856 5376..5426 100 -> Plus
2R 5771916..5771990 5427..5501 100 -> Plus
2R 5766453..5766578 4253..4378 100 -> Plus
2R 5760904..5761062 1..159 100 -> Plus
2R 5766691..5766796 4379..4484 100 -> Plus
2R 5761134..5762193 160..1219 100 -> Plus
2R 5762594..5763961 1220..2587 100 -> Plus
2R 5764021..5764771 2588..3338 100 -> Plus
2R 5764831..5765148 3339..3656 100 -> Plus
2R 5765488..5765619 3657..3788 100 -> Plus
2R 5765680..5765879 3789..3988 100 -> Plus
2R 5767285..5767406 4485..4606 100 -> Plus
2R 5772067..5772492 5502..5928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:21 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1658311..1658361 5376..5426 100 -> Plus
arm_2R 1659421..1659495 5427..5501 100 -> Plus
arm_2R 1656848..1657000 5087..5239 100 -> Plus
arm_2R 1657975..1658110 5240..5375 100 -> Plus
arm_2R 1659572..1659997 5502..5928 99   Plus
arm_2R 1648409..1648567 1..159 100 -> Plus
arm_2R 1648639..1649698 160..1219 100 -> Plus
arm_2R 1650099..1651466 1220..2587 100 -> Plus
arm_2R 1651526..1652276 2588..3338 100 -> Plus
arm_2R 1652336..1652653 3339..3656 100 -> Plus
arm_2R 1652993..1653124 3657..3788 100 -> Plus
arm_2R 1653185..1653384 3789..3988 100 -> Plus
arm_2R 1653445..1653708 3989..4252 100 -> Plus
arm_2R 1653958..1654083 4253..4378 100 -> Plus
arm_2R 1654196..1654301 4379..4484 100 -> Plus
arm_2R 1654790..1654911 4485..4606 100 -> Plus
arm_2R 1654968..1655066 4607..4705 100 -> Plus
arm_2R 1655125..1655358 4706..4939 100 -> Plus
arm_2R 1655419..1655565 4940..5086 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:58:55 Download gff for LD22358.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5769113..5769259 4940..5086 100 -> Plus
2R 5768819..5769052 4706..4939 100 -> Plus
2R 5767139..5767402 3989..4252 100 -> Plus
2R 5767652..5767777 4253..4378 100 -> Plus
2R 5767890..5767995 4379..4484 100 -> Plus
2R 5768484..5768605 4485..4606 100 -> Plus
2R 5768662..5768760 4607..4705 100 -> Plus
2R 5762333..5763392 160..1219 100 -> Plus
2R 5763793..5765160 1220..2587 100 -> Plus
2R 5765220..5765970 2588..3338 100 -> Plus
2R 5766030..5766347 3339..3656 100 -> Plus
2R 5766687..5766818 3657..3788 100 -> Plus
2R 5766879..5767078 3789..3988 100 -> Plus
2R 5770542..5770694 5087..5239 100 -> Plus
2R 5771669..5771804 5240..5375 100 -> Plus
2R 5772005..5772055 5376..5426 100 -> Plus
2R 5773115..5773189 5427..5501 100 -> Plus
2R 5773266..5773691 5502..5928 99   Plus
2R 5762103..5762261 1..159 100 -> Plus

LD22358.hyp Sequence

Translation from 0 to 5634

> LD22358.hyp
TMDSILCMILLILVRNHASEAARLNHPRVLLPIFEDKAINFTLEVDEPNC
YKWSSSRQDLISVMPIYKGFSECAYQAVVTVRTHDRRRNTAIVFAEEVQT
GETLRSDVIVDVIASLNVRTATRQLYLEEAPAMFELHAFDEQGNEFFTLE
GIEFDWEILEPGSKRPTAMRYLTFTDSPYHTVPPTIEKFEADGKKGHMIL
LEGINTGTAKVTIAMPQAEYKHVRPVEVYISVLANIIIEPSEVTIMAGDS
VSFRILQLKMDRLHVIDNNQYYLEVEDSSIAYLRGNSATGAALGRTQVFL
RDRNMADSDEVQKGPSALLTVAYPNRLSISLLPHLNWVTVQGEHHAIALD
LFAADGQKITMGTKYSINSEVDESFFAIVDRTRNGSRLFGQAKKEGITQV
YGSYKDLSVQAELQIFEELQLAPTKVVLPYDPNSLKPLKLQFHASGGDNN
YAWFSGNPQVIQIDTQGQATTEIRDVKSAYVNQEVLKDGGKLTAHTTVKV
ALSKNQKISRVAHIYFLPPERLQITRSNFETALKDFVHVHVGVYARINNS
EVPYTSCDNLHFQLDFSQPILQLEGNEGAEAAHEACHVLRLRATAVGTTS
LRVSYMYMDKVLYDIIDLYVFEPLVVLNPIENEVVLPVGSSRNIIYANGP
QRSFTVAAEIIQSTAFDEKILKVSKLEFDTQNLITAFTVLCRELGETQFT
YRVHNSLPTSSFALYQSEVTTKVHCVRPRFLKLYARHNLRDSCPLEKRTS
LLFLKDPENKIEIEIEVHDSNNRRLMNISSLGLDWEFSAGEERYQKNIIP
HRQISELEFNHGVTLPSRDLLVLTLSEVATNFRIKGTVSQYNDKLLAQHG
IHAERPPFGIKNPQTGLIYTPLIENEIRLHAVNSTLLPKDYMSIFLASGY
SERIPIAQGSGYLQLELSEAGIVQVEYNENTRILVLTPLRLGHVRLELTD
RCLMNEPSHLSISVVGIGAIEVVSMDRLERTTRIEAIVRLFDTNDNLLLV
DQSKLSAYDLSEVVADQSILSVRLGEQENVGPGEIRYTITGNQVGETKIL
FQSGKGIYKVASDPLNIQVFAPIRLFPRDSTLVVGSSIQVYFHGGPHPNT
NMIISVEKEQVATISSTVVTAHKLGTTKIVGKCLLKNPVTGKDEVVSQDS
VEVHVVALKGVQIRTPLVRIHSGAVMPATLWGLSDLSPMILGTLQNTKIS
WKVSQPQVVEIFNVFTTAGIEYQSGDLISVRVRALNPGKATITASVTLAD
GTILPPATVDLQVFKTLELVTPNAIKMDSILAAPRSILQLKSNMDNVVYK
LDDRSNGIVSVTPDGLVHTKDSLGRDLIIATTADQSLPIGIEVKNVQYIL
VTLMPILKLRELEHKIPRGMNFVFKVSLHDNLGNELSHNIEDFNGLRYEL
GNKDDVDVQIDNNLTFALNLMRETNNVIGISLKDSTGVKHSMDFIKLSVV
ESDNLFPTKTIFSVGDIICFDSPLTLSSTWRSSNEQIVYINKHTGIAQVL
SHRLKPGEKIEITNGDETKRGGFLKYDLEVRESDTILFVKSVDTFSGPEY
RGQLVIRNHLQSEKYSNLIAQNVSKCARELGSVPVNFFTCRLAAKDALGR
NLLKMYKVDALFEPSIGQYSCRLQLLTGFIELLSIVKTHDVYLELEAVVA
KGVSDKMSLKLVPGIKVFPESVRVTDLKPHEIHISGLDKALLKVQVKPSD
SKYFAVDFIEHGHGLSKYRLELFDDLPLDENFYILVVSPDTKQSIEVPII
GNTMLAPKCTDRRYGGPLVYRILENLGFVLTTTVIVIISIWVYMSCFQTQ
GVTQVNFEAFKKGKSRTELMQQSGRSSQDDTFGDSFNVRNFSPDRRRPPS
NALSESYIYGHPRLNSSNRSENSTSFS*

LD22358.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Gp210-PB 1876 CG7897-PB 1..1876 2..1877 9548 100 Plus
Gp210-PA 1876 CG7897-PA 1..1876 2..1877 9548 100 Plus

LD22358.pep Sequence

Translation from 4 to 5634

> LD22358.pep
MDSILCMILLILVRNHASEAARLNHPRVLLPIFEDKAINFTLEVDEPNCY
KWSSSRQDLISVMPIYKGFSECAYQAVVTVRTHDRRRNTAIVFAEEVQTG
ETLRSDVIVDVIASLNVRTATRQLYLEEAPAMFELHAFDEQGNEFFTLEG
IEFDWEILEPGSKRPTAMRYLTFTDSPYHTVPPTIEKFEADGKKGHMILL
EGINTGTAKVTIAMPQAEYKHVRPVEVYISVLANIIIEPSEVTIMAGDSV
SFRILQLKMDRLHVIDNNQYYLEVEDSSIAYLRGNSATGAALGRTQVFLR
DRNMADSDEVQKGPSALLTVAYPNRLSISLLPHLNWVTVQGEHHAIALDL
FAADGQKITMGTKYSINSEVDESFFAIVDRTRNGSRLFGQAKKEGITQVY
GSYKDLSVQAELQIFEELQLAPTKVVLPYDPNSLKPLKLQFHASGGDNNY
AWFSGNPQVIQIDTQGQATTEIRDVKSAYVNQEVLKDGGKLTAHTTVKVA
LSKNQKISRVAHIYFLPPERLQITRSNFETALKDFVHVHVGVYARINNSE
VPYTSCDNLHFQLDFSQPILQLEGNEGAEAAHEACHVLRLRATAVGTTSL
RVSYMYMDKVLYDIIDLYVFEPLVVLNPIENEVVLPVGSSRNIIYANGPQ
RSFTVAAEIIQSTAFDEKILKVSKLEFDTQNLITAFTVLCRELGETQFTY
RVHNSLPTSSFALYQSEVTTKVHCVRPRFLKLYARHNLRDSCPLEKRTSL
LFLKDPENKIEIEIEVHDSNNRRLMNISSLGLDWEFSAGEERYQKNIIPH
RQISELEFNHGVTLPSRDLLVLTLSEVATNFRIKGTVSQYNDKLLAQHGI
HAERPPFGIKNPQTGLIYTPLIENEIRLHAVNSTLLPKDYMSIFLASGYS
ERIPIAQGSGYLQLELSEAGIVQVEYNENTRILVLTPLRLGHVRLELTDR
CLMNEPSHLSISVVGIGAIEVVSMDRLERTTRIEAIVRLFDTNDNLLLVD
QSKLSAYDLSEVVADQSILSVRLGEQENVGPGEIRYTITGNQVGETKILF
QSGKGIYKVASDPLNIQVFAPIRLFPRDSTLVVGSSIQVYFHGGPHPNTN
MIISVEKEQVATISSTVVTAHKLGTTKIVGKCLLKNPVTGKDEVVSQDSV
EVHVVALKGVQIRTPLVRIHSGAVMPATLWGLSDLSPMILGTLQNTKISW
KVSQPQVVEIFNVFTTAGIEYQSGDLISVRVRALNPGKATITASVTLADG
TILPPATVDLQVFKTLELVTPNAIKMDSILAAPRSILQLKSNMDNVVYKL
DDRSNGIVSVTPDGLVHTKDSLGRDLIIATTADQSLPIGIEVKNVQYILV
TLMPILKLRELEHKIPRGMNFVFKVSLHDNLGNELSHNIEDFNGLRYELG
NKDDVDVQIDNNLTFALNLMRETNNVIGISLKDSTGVKHSMDFIKLSVVE
SDNLFPTKTIFSVGDIICFDSPLTLSSTWRSSNEQIVYINKHTGIAQVLS
HRLKPGEKIEITNGDETKRGGFLKYDLEVRESDTILFVKSVDTFSGPEYR
GQLVIRNHLQSEKYSNLIAQNVSKCARELGSVPVNFFTCRLAAKDALGRN
LLKMYKVDALFEPSIGQYSCRLQLLTGFIELLSIVKTHDVYLELEAVVAK
GVSDKMSLKLVPGIKVFPESVRVTDLKPHEIHISGLDKALLKVQVKPSDS
KYFAVDFIEHGHGLSKYRLELFDDLPLDENFYILVVSPDTKQSIEVPIIG
NTMLAPKCTDRRYGGPLVYRILENLGFVLTTTVIVIISIWVYMSCFQTQG
VTQVNFEAFKKGKSRTELMQQSGRSSQDDTFGDSFNVRNFSPDRRRPPSN
ALSESYIYGHPRLNSSNRSENSTSFS*

LD22358.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11031-PA 1877 GF11031-PA 5..1877 4..1876 7092 69 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23181-PA 1876 GG23181-PA 1..1876 1..1876 9017 90 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21467-PA 1879 GH21467-PA 1..1874 1..1871 6947 68.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Gp210-PB 1876 CG7897-PB 1..1876 1..1876 9548 100 Plus
Gp210-PA 1876 CG7897-PA 1..1876 1..1876 9548 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19944-PA 622 GI19944-PA 1..562 1..559 2184 69.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20049-PA 1879 GL20049-PA 5..1879 4..1876 6944 69.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20669-PB 1879 GA20669-PB 5..1879 4..1876 6941 69.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16521-PA 1799 GM16521-PA 1..1799 1..1876 8986 90.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10385-PA 1876 GD10385-PA 1..1876 1..1876 9634 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17783-PA 1301 GJ17783-PA 1..563 1..558 2135 69.3 Plus
Dvir\GJ17783-PA 1301 GJ17783-PA 552..949 863..1260 1536 71.6 Plus
Dvir\GJ17783-PA 1301 GJ17783-PA 951..1295 1494..1870 1105 56 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21543-PA 1885 GK21543-PA 6..1877 4..1869 6709 65.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20583-PA 1876 GE20583-PA 1..1876 1..1876 9039 89.6 Plus