Clone LD22374 Report

Search the DGRC for LD22374

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:223
Well:74
Vector:pOT2
Associated Gene/TranscriptCG3107-RA
Protein status:LD22374.pep: gold
Preliminary Size:3700
Sequenced Size:3192

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3107 2001-01-01 Release 2 assignment
CG3107 2002-05-04 Blastp of sequenced clone
CG3107 2003-01-01 Sim4 clustering to Release 3
CG3107 2008-04-29 Release 5.5 accounting
CG3107 2008-08-15 Release 5.9 accounting
CG3107 2008-12-18 5.12 accounting

Clone Sequence Records

LD22374.complete Sequence

3192 bp (3192 high quality bases) assembled on 2002-05-04

GenBank Submission: AY102681

> LD22374.complete
CGCGATTCAGCACGGATGGTGCTGAGTTCATGTTAAAAGGTGGAATGTTA
TCGCGGTGGAAGATGTGGTCTCCACAATACAAAATCTTGAGAAATCACCT
TATAAATTTCAAGTCGGTGTCCACATATAAGAACATTTCTGGCGTCAATA
CCAAGCAGCCCAAATCTCCACGACAATTTGGTTGCATGCCACATGTAACT
AAGAAAAGAAAATACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCA
ATGCGAACGTGTGGAACACATTTCTGAATTTGAACTTACGTCCTATACTT
TTCGATATGAGCGCACGGGTACAGAATTATGGCATATCGACCGAAATGAT
TCAAACAACGTATTTTCCATTAATTTTCGAACCACGCCCTTTGATTCTAC
TGGTCTACCTCATATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAAT
ATCCTGTCAGGGACCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACA
TTTATGAATGCAATGACTGGTCCAGATTATACTATTTATCCTTTTTCGAC
GATGAATGAGATAGATTTTAGGAATTTGCAACATATTTATTTAGATGCCG
TATTCAGACCAAACCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGG
CTAGAAAACAAAGATATATTCGATAAACAATCGAAGCTTGTAATCAAAGG
AGTTGTTTATAACGAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTAT
TTAGTCAGAATTTACTCAATAATATTTTTCCTGATCACACATATCGACAT
GTGTCTGGCGGAAATCCATTGGAAATACCCAAGTTAGCATACAACGATTT
AGTTGAATTCCACAAAAAATACTATCATCCAAGTAATGCTCGCATATATT
CCTACGGATTATTTGATGCAAGTAAAACCCTCGCACTTCTCGACGAGGAG
TATTTATCAGATCAAAGCTGGGTTGACAACTCTTACAGTTTAATACGTCA
GCAAGAGCGTTGGACTCAGCCTCGTCTTGTACATATATCCAGTAGACTAG
ATAACATGGGTACAACAATTGATCGACAGAACCAAATTGCTATTGCACTG
CTGATGTGTGATGCAACCAATATACAAGAAAGTTTTGAATTACACGTGCT
ATCTGAGGTACTTATTCGTGGGCCTAACTCCCCTTTTTACAAAAACCTTA
TAGAACCAAATTTTTCCGGTGGATACAATCAAACCACTGGATATTCATCG
GATACTAAGGACACAACCTTCGTCGTTGGATTACAAGACCTTCGAGTTGA
AGACTTCAAAAAATGCATTGAAATTTTTGACAAAACCATTATTAATTCTA
TGAATGACGGGTTTGATTCCCAGCATGTTGAAAGTGTTCTGCACAATCTT
GAGTTGTCTTTAAAGCACCAGAATCCGAACTTCGGAAATACTTTGCTTTT
TAATTCCACAGCATTATGGAATCATGATGGCGATGTAGTCAGTAATCTCC
GCGTATCAGATATGATATCAGGGCTTCGGGAAAGCATAAGCCAGAATAAA
AAATATTTCCAAGAGAAAATAGAGAAATATTTCGCCAATAACAATCATAG
ACTAACATTAACTATGTCACCTGATGAGGCATATGAGGATAAATTCAAAC
AGGCCGAGTTGGAGTTGGTAGAACAAAAAGTAAAACTTTTGGATGAAGTT
AAGATTGAAAAAATATATGAGAGAGGATTAATATTGGATTCATATCAGAA
GGCTGAGTCAAATACTGATCTTTTACCTTGTCTGACAATGAATGATGTAA
GAGATCCACCAAAATGGCCTAAGCTATTCATACAAAATGTTCAAAATGTT
CGGACCCAGATTTGCAAGGTTCCGACCAATGAAATTACTTATTTTAAGTG
CATGTTTAATATAACAGGACTAAGTCATGAAGAAACTCAGCTTATGCCGC
TTTTTTGCAATGTTATTAGTGCAATGGGCACCACAAACTATAATTATCGG
GAGTTCGATAAGCACATCCTTTTAAAAACCGGTGGATTTGATTTTAAGTT
ACACTTAATTGAAGATGTTAGGGATTCAAAAAGTTACAGTCTAAGCGTAA
TGATAAACACACATGCACTTAATAACAATGTTCCAGAGATGTTTGCCTTG
TGCCAAGAGTTGATTAAAAATGTTAGGTTTGATGACTCGGAGCGACTTAA
AATGCTTATAGAAAATTATATATCATATATATCTGTGGGAGTGGCTAGTT
CTGGTCATTTATATGCTATGTTGGGAGCAACATCACAAGTGTGTGATGCT
GGTAAACTCAAATCGCTACTATATGGGGTAGATCATATAGACTTTATGAA
AAATTTTGTACATTCTACAAGCACGGTAGATATATGTGATAAATTGTCGA
CAATTGCATCAAAAGTTTTTAACAAGGATAATATGCGTGGCGCCATTAAC
ACAACACAATCTTATGAGCCATCGGCTATAAGTAATTACGAAAAATTTTT
GGAGAGCCTGCCAACATTTGGGAAAACACAAACAAGTCGAAATATCCATT
ATTTGGACCCTAGCTGTCAACAATACGTGATGAACATACCAGTTAATTAC
TGTGCTAAAGCTTTGTTCACAGTCCCATATCTCCACCAAGACCATCCAAC
ACTGCGAGTTTTGGCAAAATTGCTATCAGCCAAATATCTATTGCCTGTTA
TTCGCGAGAAGAATGGCGCTTACGGAGCTGGTGCGAAAATCAGCTCAGAC
GGGATTTTCAGTTTTTATAGTTATCGAGATCCAAATTCAACTAAAACGCT
TAACGCTTTTGATGAAACTTATAAATGGTTACGTGCAAATCAAAATGTAA
TTGACCAACAGTCTCTTTTTGAGTCGAAGCTTGGTGTGTTGCAGCAATTA
GACACTCCAATAGCACCTGGAAATATTGGCATCGATTATTTCCTTTATGA
AGTGTCACAAGAGGATTTTGAGAGCTATCGCTCCCGAATGCTCTCTGTAA
CTATTGATGATCTGCAATGCGCTATAGAAAATTATTTTGGAAAAGAGTCC
ATGCATTATGGAAAATGCATTTTGGGTCCAGTCAATGCAAATTTGGAGCT
TGAAACTAGTCACAAATGGATAATAAATAATTAACTAGTTGTAAATGTAA
TAAATTTATAAAATTCAATTTAAAAAAAAAAAAAAAAAAAAA

LD22374.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RA 3302 CG3107-RA 90..3261 1..3172 15860 100 Plus
CG3107.b 3924 CG3107.b 753..3922 3..3172 15850 100 Plus
CG3107.a 3241 CG3107.a 70..3239 3..3172 15850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 980021..982586 606..3171 12815 100 Plus
chr2R 21145070 chr2R 979367..979972 2..607 3030 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5092525..5095091 606..3172 12835 100 Plus
2R 25286936 2R 5091871..5092476 2..607 3030 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5093724..5096290 606..3172 12835 100 Plus
2R 25260384 2R 5093070..5093675 2..607 3030 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:30:16 has no hits.

LD22374.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:30:57 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 979366..979972 1..607 99 -> Plus
chr2R 980023..982586 608..3171 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:24 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 1..3105 30..3134 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:18 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 1..3105 30..3134 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:02:02 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RB 1..3105 30..3134 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:49 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 1..3105 30..3134 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:55 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 1..3105 30..3134 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:31:41 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 54..3224 1..3171 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:18 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 54..3224 1..3171 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:02:02 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 60..3230 1..3171 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:50 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 54..3224 1..3171 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:55 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 60..3230 1..3171 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:57 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5091870..5092476 1..607 99 -> Plus
2R 5092527..5095090 608..3171 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:57 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5091870..5092476 1..607 99 -> Plus
2R 5092527..5095090 608..3171 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:57 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5091870..5092476 1..607 99 -> Plus
2R 5092527..5095090 608..3171 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:02:02 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 979375..979981 1..607 99 -> Plus
arm_2R 980032..982595 608..3171 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:21 Download gff for LD22374.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5093069..5093675 1..607 99 -> Plus
2R 5093726..5096289 608..3171 100   Plus

LD22374.hyp Sequence

Translation from 2 to 3133

> LD22374.hyp
RFSTDGAEFMLKGGMLSRWKMWSPQYKILRNHLINFKSVSTYKNISGVNT
KQPKSPRQFGCMPHVTKKRKYKYEEGKTYHGFQCERVEHISEFELTSYTF
RYERTGTELWHIDRNDSNNVFSINFRTTPFDSTGLPHILEHLSLCGSQKY
PVRDPFFKMLNRSVATFMNAMTGPDYTIYPFSTMNEIDFRNLQHIYLDAV
FRPNLAYFDFLQEGWRLENKDIFDKQSKLVIKGVVYNEMKGAFSENAQVF
SQNLLNNIFPDHTYRHVSGGNPLEIPKLAYNDLVEFHKKYYHPSNARIYS
YGLFDASKTLALLDEEYLSDQSWVDNSYSLIRQQERWTQPRLVHISSRLD
NMGTTIDRQNQIAIALLMCDATNIQESFELHVLSEVLIRGPNSPFYKNLI
EPNFSGGYNQTTGYSSDTKDTTFVVGLQDLRVEDFKKCIEIFDKTIINSM
NDGFDSQHVESVLHNLELSLKHQNPNFGNTLLFNSTALWNHDGDVVSNLR
VSDMISGLRESISQNKKYFQEKIEKYFANNNHRLTLTMSPDEAYEDKFKQ
AELELVEQKVKLLDEVKIEKIYERGLILDSYQKAESNTDLLPCLTMNDVR
DPPKWPKLFIQNVQNVRTQICKVPTNEITYFKCMFNITGLSHEETQLMPL
FCNVISAMGTTNYNYREFDKHILLKTGGFDFKLHLIEDVRDSKSYSLSVM
INTHALNNNVPEMFALCQELIKNVRFDDSERLKMLIENYISYISVGVASS
GHLYAMLGATSQVCDAGKLKSLLYGVDHIDFMKNFVHSTSTVDICDKLST
IASKVFNKDNMRGAINTTQSYEPSAISNYEKFLESLPTFGKTQTSRNIHY
LDPSCQQYVMNIPVNYCAKALFTVPYLHQDHPTLRVLAKLLSAKYLLPVI
REKNGAYGAGAKISSDGIFSFYSYRDPNSTKTLNAFDETYKWLRANQNVI
DQQSLFESKLGVLQQLDTPIAPGNIGIDYFLYEVSQEDFESYRSRMLSVT
IDDLQCAIENYFGKESMHYGKCILGPVNANLELETSHKWIINN*

LD22374.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-PD 1034 CG3107-PD 1..1034 10..1043 5467 100 Plus
CG3107-PC 1034 CG3107-PC 1..1034 10..1043 5467 100 Plus
CG3107-PA 1034 CG3107-PA 1..1034 10..1043 5467 100 Plus
CG3107-PB 1034 CG3107-PB 1..1034 10..1043 5467 100 Plus

LD22374.pep Sequence

Translation from 29 to 3133

> LD22374.pep
MLKGGMLSRWKMWSPQYKILRNHLINFKSVSTYKNISGVNTKQPKSPRQF
GCMPHVTKKRKYKYEEGKTYHGFQCERVEHISEFELTSYTFRYERTGTEL
WHIDRNDSNNVFSINFRTTPFDSTGLPHILEHLSLCGSQKYPVRDPFFKM
LNRSVATFMNAMTGPDYTIYPFSTMNEIDFRNLQHIYLDAVFRPNLAYFD
FLQEGWRLENKDIFDKQSKLVIKGVVYNEMKGAFSENAQVFSQNLLNNIF
PDHTYRHVSGGNPLEIPKLAYNDLVEFHKKYYHPSNARIYSYGLFDASKT
LALLDEEYLSDQSWVDNSYSLIRQQERWTQPRLVHISSRLDNMGTTIDRQ
NQIAIALLMCDATNIQESFELHVLSEVLIRGPNSPFYKNLIEPNFSGGYN
QTTGYSSDTKDTTFVVGLQDLRVEDFKKCIEIFDKTIINSMNDGFDSQHV
ESVLHNLELSLKHQNPNFGNTLLFNSTALWNHDGDVVSNLRVSDMISGLR
ESISQNKKYFQEKIEKYFANNNHRLTLTMSPDEAYEDKFKQAELELVEQK
VKLLDEVKIEKIYERGLILDSYQKAESNTDLLPCLTMNDVRDPPKWPKLF
IQNVQNVRTQICKVPTNEITYFKCMFNITGLSHEETQLMPLFCNVISAMG
TTNYNYREFDKHILLKTGGFDFKLHLIEDVRDSKSYSLSVMINTHALNNN
VPEMFALCQELIKNVRFDDSERLKMLIENYISYISVGVASSGHLYAMLGA
TSQVCDAGKLKSLLYGVDHIDFMKNFVHSTSTVDICDKLSTIASKVFNKD
NMRGAINTTQSYEPSAISNYEKFLESLPTFGKTQTSRNIHYLDPSCQQYV
MNIPVNYCAKALFTVPYLHQDHPTLRVLAKLLSAKYLLPVIREKNGAYGA
GAKISSDGIFSFYSYRDPNSTKTLNAFDETYKWLRANQNVIDQQSLFESK
LGVLQQLDTPIAPGNIGIDYFLYEVSQEDFESYRSRMLSVTIDDLQCAIE
NYFGKESMHYGKCILGPVNANLELETSHKWIINN*

LD22374.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12276-PA 1034 GF12276-PA 27..1034 28..1034 3925 70.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23138-PA 1030 GG23138-PA 1..1029 6..1033 4988 88.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20154-PA 1021 GH20154-PA 15..1019 29..1032 3762 67 Plus
Dgri\GH20152-PA 1011 GH20152-PA 44..1007 53..1016 2861 53.3 Plus
Dgri\GH21752-PA 803 GH21752-PA 1..555 53..607 1708 54.1 Plus
Dgri\GH21752-PA 803 GH21752-PA 551..803 763..1015 765 54.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-PD 1034 CG3107-PD 1..1034 1..1034 5467 100 Plus
CG3107-PC 1034 CG3107-PC 1..1034 1..1034 5467 100 Plus
CG3107-PA 1034 CG3107-PA 1..1034 1..1034 5467 100 Plus
CG3107-PB 1034 CG3107-PB 1..1034 1..1034 5467 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20664-PA 1034 GI20664-PA 51..1032 51..1032 3787 69.1 Plus
Dmoj\GI20663-PA 1025 GI20663-PA 50..1021 54..1025 3183 57.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11044-PA 1000 GL11044-PA 2..998 36..1032 3983 72.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15984-PA 1000 GA15984-PA 2..998 36..1032 4004 72.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13556-PA 1031 GM13556-PA 1..1031 6..1034 5318 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16680-PA 1031 GD16680-PA 1..1031 6..1034 5293 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20413-PA 1032 GJ20413-PA 42..1030 43..1032 3866 70.5 Plus
Dvir\GJ20412-PA 1032 GJ20412-PA 27..1016 26..1023 3273 58.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10626-PA 1030 GK10626-PA 49..1026 53..1030 3881 71 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11344-PA 1039 GE11344-PA 5..1038 2..1033 4959 88.2 Plus