Clone LD22376 Report

Search the DGRC for LD22376

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:223
Well:76
Vector:pOT2
Associated Gene/TranscriptCG6903-RA
Protein status:LD22376.pep: gold
Preliminary Size:2168
Sequenced Size:2104

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6903 2001-01-01 Release 2 assignment
CG6903 2002-06-12 Blastp of sequenced clone
CG6903 2003-01-01 Sim4 clustering to Release 3
CG6903 2008-04-29 Release 5.5 accounting
CG6903 2008-08-15 Release 5.9 accounting
CG6903 2008-12-18 5.12 accounting

Clone Sequence Records

LD22376.complete Sequence

2104 bp (2104 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122161

> LD22376.complete
TTTGTTGTTGCTATTGGCATAGCGGTTTTGTTTTTATTGCGCACTCGAAA
TTGTTTTGTTATTTGCTGGCGATACGATTCGAAAAACGCTCCTCAGATGG
TGCAAAATTTAGTTTAGTCCAATCCAGACGCTCGTCGCGTTTAAATGCAA
GTTTGTTTGTGTCTGTGTCGTAAGTAACTGTTGAATGCAATTTGGCTATT
TGGCAATTGCAGTTGCAACTTTGCAAACTGCAACTTTGTGAATGAGAAGC
GCGACAAGAACGCAAATCACCGAAAAATGTCGCTTTTTGTGGAATATACG
GAGCCGAAGTGGCGCCACCTGGATATGCGCGCGCTATCCGTTGACGAGTT
TTACCTGTACCTGCGCTCGGAGTTCAGCAGCCAGACCCATCTGTACTCAC
TGTCCGACGAATGCTACACGTGTCCGTATACCAAAGTGAAAGCTCTGCCC
GCTGCCGACGTCGCTGCCGTCGTCGTTGAACCGTTACGTTTGAGTTCGGC
ATATTCGCTGAATTTCAAAATATTCGACCTCGATCAGGGTCACTATGCCT
ACGACAATGTCTCGTCGCTCTGCTGGCTGCGTCGCAGCGATCTGCAGGAA
TTCGGTGTCTACAACTTGACCCTGCAAGCGAATGGCACCTGTGCCTTTGC
CGTGGACAAGCCGGGCGTACCAATTAATTACGCTTTCATCGCCGTTTTCG
TTCTGGTTGCCGCCCTGCTAATCGCCCTGAAGCTAGTGAGCTGCGCCTGG
CGTTATTATCGCTATGACGAGGCCACCGCCGCTGCCGACAGCATCGGCGA
AGCCGCCACCAAGGCGACGCAGAGGAAGCGCCTCCGCAGCCTGGACACCT
TTCGCGGAATTTCGATTGTTCTGATGATCTTCGTGAACAGCGGCGGCGGC
GGTTACGCCTGGATCGAGCATGCAGCCTGGAACGGACTACACTTGGCCGA
TGTCGTCTTCCCCTCGTTCCTCTGGATCATGGGCGTGTGCATACCGCTCT
CCGTCAAATCGCAATTGTCGCGAGGCAGCAGTAAGGCGAGGATTTGCCTG
CGCATACTGTGGCGATCGATAAAGCTGTTCGTCATCGGCCTGTGCCTCAA
CTCGATGAGCGGGCCGAATCTGGAGCAGCTGCGCATCATGGGTGTGCTGC
AGCGATTCGGAGTGGCATACCTGGTGGTTGCGATTCTTCATACTTTGTGC
TGTCGCAGGGAGCCTATCAGTCCTCAAAGATCCTGGCAGCGCGCCGTTCA
CGATGTGTGCCTGTTCAGCGGAGAGTTGGCTGTGCTGCTGGCCCTGGTGG
CCACCTATTTGGGCCTGACCTTCGGCCTACGCGTGCCTGGCTGTCCGCGC
GGCTATTTGGGCCCTGGCGGCAAACACGACTACAATGCCCATCCCAAGTG
CATTGGTGGCGCAGCGGGCTATGCGGACCTTCAGGTGCTGGGCAATGCGC
ATATCTACCAGCATCCGACTGCCAAGTATGTTTACGATTCCACAGCCTTC
GATCCAGAGGGTATATTCGGCTGCATTCTAAGCGTTGTGCAAGTGCTGCT
CGGCGCCTTTGCCGGCGTAACACTGCTTGTGCATCCCAACTTTCAGTCAA
GGATCCGTCGCTGGACACTACTCGCCATTCTTCTGGGCCTCATTGGCGGT
GCTCTGTGCGGATTCTCTCGTGAGGGCGGCGCCATACCCATGAACAAGAA
CCTTTGGTCGCTGTCCTTCGTGTGCGTCACCGTCAGCTTGGCCCTGTTGA
TTCTCTCACTGATGTACTACTTCATCGACGTGCGGGAGACGTGGAGCTGG
TCGGGCTATCCCTTCACCGAATGCGGCATGAACGCCATCGTGATGTACGT
GGGCCACTCAGTGCTGCACAAGATGCTGCCCTGGCACTGGCGGATCGGCG
AGATGAACACGCACTTCATGCTCCTGCTGGAGGCCACGTGGAACACGCTG
GTCTGGGTGGGCATCGCGCTGTATCTGGACGCGCAGGAATTCTACTACAG
CGTGTAGGGCCACACGAGAGTAACCATATGCACAATCAATTCAATTGCCA
AATAAATTAGATACTATCGTTGTACGATCGCAAATCAAAAAAAAAAAAAA
AAAA

LD22376.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6903-RA 2599 CG6903-RA 196..2285 1..2090 10450 100 Plus
CG6903.c 5925 CG6903.c 196..2285 1..2090 10450 100 Plus
CG6903.a 2079 CG6903.a 68..1947 211..2090 9400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4813063..4813726 857..1520 3305 99.8 Plus
chrX 22417052 chrX 4813779..4814346 1519..2086 2810 99.6 Plus
chrX 22417052 chrX 4811655..4812074 1..420 2100 100 Plus
chrX 22417052 chrX 4812828..4813003 682..857 880 100 Plus
chrX 22417052 chrX 4812187..4812327 420..560 705 100 Plus
chrX 22417052 chrX 4812633..4812754 561..682 595 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4920329..4920992 857..1520 3320 100 Plus
X 23542271 X 4921045..4921616 1519..2090 2860 100 Plus
X 23542271 X 4918921..4919340 1..420 2100 100 Plus
X 23542271 X 4920094..4920269 682..857 880 100 Plus
X 23542271 X 4919453..4919593 420..560 705 100 Plus
X 23542271 X 4919899..4920020 561..682 610 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4928427..4929090 857..1520 3320 100 Plus
X 23527363 X 4929143..4929714 1519..2090 2860 100 Plus
X 23527363 X 4927019..4927438 1..420 2100 100 Plus
X 23527363 X 4928192..4928367 682..857 880 100 Plus
X 23527363 X 4927551..4927691 420..560 705 100 Plus
X 23527363 X 4927997..4928118 561..682 610 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:22:31 has no hits.

LD22376.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:23:46 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4812188..4812327 421..560 100 -> Plus
chrX 4812633..4812754 561..682 99 -> Plus
chrX 4812829..4813003 683..857 100 -> Plus
chrX 4811655..4812074 1..420 100 -> Plus
chrX 4813064..4813725 858..1519 99 -> Plus
chrX 4813780..4814346 1520..2086 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:25 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 1..1731 277..2007 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:25 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 1..1731 277..2007 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:28 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 1..1731 277..2007 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:11 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 1..1731 277..2007 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:53 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 1..1731 277..2007 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:49:06 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 192..2277 1..2086 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:25 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 192..2277 1..2086 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:28 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 192..2277 1..2086 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:11 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 192..2277 1..2086 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:53 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6903-RA 192..2277 1..2086 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:46 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
X 4918921..4919340 1..420 100 -> Plus
X 4919454..4919593 421..560 100 -> Plus
X 4919899..4920020 561..682 100 -> Plus
X 4920095..4920269 683..857 100 -> Plus
X 4920330..4920991 858..1519 100 -> Plus
X 4921046..4921612 1520..2086 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:46 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
X 4918921..4919340 1..420 100 -> Plus
X 4919454..4919593 421..560 100 -> Plus
X 4919899..4920020 561..682 100 -> Plus
X 4920095..4920269 683..857 100 -> Plus
X 4920330..4920991 858..1519 100 -> Plus
X 4921046..4921612 1520..2086 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:46 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
X 4918921..4919340 1..420 100 -> Plus
X 4919454..4919593 421..560 100 -> Plus
X 4919899..4920020 561..682 100 -> Plus
X 4920095..4920269 683..857 100 -> Plus
X 4920330..4920991 858..1519 100 -> Plus
X 4921046..4921612 1520..2086 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:28 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4812954..4813373 1..420 100 -> Plus
arm_X 4813487..4813626 421..560 100 -> Plus
arm_X 4813932..4814053 561..682 100 -> Plus
arm_X 4814128..4814302 683..857 100 -> Plus
arm_X 4814363..4815024 858..1519 100 -> Plus
arm_X 4815079..4815645 1520..2086 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:58 Download gff for LD22376.complete
Subject Subject Range Query Range Percent Splice Strand
X 4927019..4927438 1..420 100 -> Plus
X 4927552..4927691 421..560 100 -> Plus
X 4927997..4928118 561..682 100 -> Plus
X 4928193..4928367 683..857 100 -> Plus
X 4928428..4929089 858..1519 100 -> Plus
X 4929144..4929710 1520..2086 100   Plus

LD22376.pep Sequence

Translation from 276 to 2006

> LD22376.pep
MSLFVEYTEPKWRHLDMRALSVDEFYLYLRSEFSSQTHLYSLSDECYTCP
YTKVKALPAADVAAVVVEPLRLSSAYSLNFKIFDLDQGHYAYDNVSSLCW
LRRSDLQEFGVYNLTLQANGTCAFAVDKPGVPINYAFIAVFVLVAALLIA
LKLVSCAWRYYRYDEATAAADSIGEAATKATQRKRLRSLDTFRGISIVLM
IFVNSGGGGYAWIEHAAWNGLHLADVVFPSFLWIMGVCIPLSVKSQLSRG
SSKARICLRILWRSIKLFVIGLCLNSMSGPNLEQLRIMGVLQRFGVAYLV
VAILHTLCCRREPISPQRSWQRAVHDVCLFSGELAVLLALVATYLGLTFG
LRVPGCPRGYLGPGGKHDYNAHPKCIGGAAGYADLQVLGNAHIYQHPTAK
YVYDSTAFDPEGIFGCILSVVQVLLGAFAGVTLLVHPNFQSRIRRWTLLA
ILLGLIGGALCGFSREGGAIPMNKNLWSLSFVCVTVSLALLILSLMYYFI
DVRETWSWSGYPFTECGMNAIVMYVGHSVLHKMLPWHWRIGEMNTHFMLL
LEATWNTLVWVGIALYLDAQEFYYSV*

LD22376.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20351-PA 576 GF20351-PA 1..576 1..576 2540 85.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18736-PA 576 GG18736-PA 1..576 1..576 2953 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12115-PA 573 GH12115-PA 1..573 1..576 2372 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6903-PB 576 CG6903-PB 1..576 1..576 3051 100 Plus
CG6903-PA 576 CG6903-PA 1..576 1..576 3051 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16326-PA 570 GI16326-PA 1..570 1..576 2314 75.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15027-PA 493 GL15027-PA 1..228 1..229 914 79.5 Plus
Dper\GL15027-PA 493 GL15027-PA 234..493 317..576 797 66.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19944-PA 574 GA19944-PA 1..574 1..576 2278 81.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12376-PA 576 GM12376-PA 1..576 1..576 2987 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16714-PA 318 GD16714-PA 1..299 1..299 1539 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15666-PA 572 GJ15666-PA 1..572 1..576 2251 77.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25317-PA 537 GK25317-PA 1..526 1..524 1974 73.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16376-PA 576 GE16376-PA 1..576 1..576 2888 95.7 Plus

LD22376.hyp Sequence

Translation from 276 to 2006

> LD22376.hyp
MSLFVEYTEPKWRHLDMRALSVDEFYLYLRSEFSSQTHLYSLSDECYTCP
YTKVKALPAADVAAVVVEPLRLSSAYSLNFKIFDLDQGHYAYDNVSSLCW
LRRSDLQEFGVYNLTLQANGTCAFAVDKPGVPINYAFIAVFVLVAALLIA
LKLVSCAWRYYRYDEATAAADSIGEAATKATQRKRLRSLDTFRGISIVLM
IFVNSGGGGYAWIEHAAWNGLHLADVVFPSFLWIMGVCIPLSVKSQLSRG
SSKARICLRILWRSIKLFVIGLCLNSMSGPNLEQLRIMGVLQRFGVAYLV
VAILHTLCCRREPISPQRSWQRAVHDVCLFSGELAVLLALVATYLGLTFG
LRVPGCPRGYLGPGGKHDYNAHPKCIGGAAGYADLQVLGNAHIYQHPTAK
YVYDSTAFDPEGIFGCILSVVQVLLGAFAGVTLLVHPNFQSRIRRWTLLA
ILLGLIGGALCGFSREGGAIPMNKNLWSLSFVCVTVSLALLILSLMYYFI
DVRETWSWSGYPFTECGMNAIVMYVGHSVLHKMLPWHWRIGEMNTHFMLL
LEATWNTLVWVGIALYLDAQEFYYSV*

LD22376.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6903-PB 576 CG6903-PB 1..576 1..576 3051 100 Plus
CG6903-PA 576 CG6903-PA 1..576 1..576 3051 100 Plus