Clone LD22381 Report

Search the DGRC for LD22381

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:223
Well:81
Vector:pOT2
Associated Gene/Transcriptchrb-RC
Protein status:LD22381.pep: gold
Preliminary Size:1317
Sequenced Size:1918

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7533 2001-09-19 Blastp of sequenced clone
CG7533 2003-01-01 Sim4 clustering to Release 3
chrb 2008-04-29 Release 5.5 accounting
chrb 2008-08-15 Release 5.9 accounting
chrb 2008-12-18 5.12 accounting

Clone Sequence Records

LD22381.complete Sequence

1918 bp (1918 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060367

> LD22381.complete
ACATCGGCACATAAGGGGCAGAACGAGAAGAATTAGAGCCAGAAAATCGG
AAAACCAGAAAAGAATACTTCTACAAACGAAACGCAGCCATCAGCACTTG
AAACTCCGCCATATGTAGGAAAGCAAAGCAAAGATAAATACGAAATTAAA
ATCTCTGTCCAAACAACAAGAACGTCATGAATTAAATCAAAACCATGTGC
TGTGCTTAAATTTAAAAAGGAAACCAGACAGAGCGAGACAAAAAGGGGAA
GCGAAAGCCCAGAGGAAGAAAATAGCGAGAGAGAGCTGAACGGGGCGGCA
ATTTGCGTTGATTTTTTAGAATGTATTGAATTGAAATGTTTAACTAGAAT
AACAAATTTAGTTGTTGATACTTTTCCAATTGTTTGTTAAAACGCTGTCG
CTGGAAAATCGAACTCTCCACCACATACACACACACAACAAAGTAAACAC
ACAATAAAACACCTAACCACACGCGAAGTAAAATCAAATTCTTGTGATTA
AAGTGCATTTCTATACGTACGTTAAACTACAACTATTCACACCCACGCAA
TATATTAAACGCATCGAAAGTCGGTCGAGATCAAACGCCTATAGCCTATA
TAATCGCATTCGCATTCGGTGGCAGCAGCAGGCGGCAGACTTTCATTATA
AATCCAACAATCGGCTGAAAACACACAAAATAGCAGTTGCAACGGCGGCT
CTATGAAGATGGAAGTGCTCTCAGTACAAAATCACATTCAGGGAAAATTC
GGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACGGCGCCGCTGGAGGA
GGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACACAGCCGCCGGCGAGG
GCATTCTGGACGTCGACGTGGTAGATGGCCATCCAGCCTCTGTGCTCCAC
ATGCGACAGCACCAGGCGCTCAACACCCGCCCATCGGCCACGCCTCCATC
GGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATCCGTCGGTATGACCA
CTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCAGTTTTGAGGCGCCC
CTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCCTACATGACCAACGT
GCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCCCGCATCGCCGCTGC
AGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACAACTTGGACGATGTG
AGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTGCAGGCTCAGCTACG
GGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGTCACGCTGCCCAACG
ACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGATGTCGGAGCGGGAA
CCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAGTTCGAGAGCGAGCC
CAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGATCCGGACACGGTGT
CCATCTTCGAGCTGTACTTGACATTGAGGCAGGACAAGAGCGGCTGGAGC
TCCTTGGTGCCGCAGTTTATAAAAAACCTTACTCGTAGCAATACCATCAA
CATCAGTCCCGACTTCACGCTGACCAAGAAAAAGCTCTACTCATCCGAGT
GAGTCGCTCGACGGAGGAGCGGCATGGAGTGCGAACCAGAATCGCTGGGC
TGCTCAGAACTCAATCCCTCCGAACAACAACAGTAACAGCAGCAATCGCA
ATACGAACATCTATTGGTTGTGCCTCCTTCGTCGCAATAGCCAAGATTCA
TGATCTTCATTATGGAATATAGAGAGATGATGTTTAACCCTAGAGGCAAA
CTTTTGGACCACAAACTATCAACTTACTCCTGCAAATAACAAATCAACTC
AACGCTAAAGCAAAAACAATTATTTTGGAACCTAAGCTCTAAAACAAAAC
CAAAAAAAAAAAAAAAAA

LD22381.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 4481 chrb-RC 329..2236 1..1908 9540 100 Plus
chrb.f 5236 chrb.f 329..2236 1..1908 9540 100 Plus
chrb.e 5907 chrb.e 329..2236 1..1908 9540 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11478700..11479468 1..769 3830 99.9 Plus
chr3L 24539361 chr3L 11484962..11485607 768..1413 3215 99.8 Plus
chr3L 24539361 chr3L 11485891..11486268 1524..1901 1890 100 Plus
chr3L 24539361 chr3L 11485720..11485830 1413..1523 555 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11487833..11488601 1..769 3845 100 Plus
3L 28110227 3L 11494088..11494733 768..1413 3230 100 Plus
3L 28110227 3L 11495017..11495401 1524..1908 1925 100 Plus
3L 28110227 3L 11494846..11494956 1413..1523 555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11480933..11481701 1..769 3845 100 Plus
3L 28103327 3L 11487188..11487833 768..1413 3230 100 Plus
3L 28103327 3L 11488117..11488501 1524..1908 1925 100 Plus
3L 28103327 3L 11487946..11488056 1413..1523 555 100 Plus
Blast to na_te.dros performed 2019-03-15 15:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2392..2432 1673..1713 115 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2376 1673..1711 114 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2950..2988 1673..1711 114 76.9 Plus

LD22381.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:54:43 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11478700..11479468 1..769 99 -> Plus
chr3L 11484964..11485606 770..1412 99 -> Plus
chr3L 11485720..11485830 1413..1523 100 -> Plus
chr3L 11485891..11486257 1524..1890 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:27 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 1..900 703..1602 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:53 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 1..900 703..1602 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:45:24 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 1..900 703..1602 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:31 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 1..900 703..1602 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:22 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 1..900 703..1602 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:40 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 274..2174 1..1901 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:53 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 274..2174 1..1901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:24 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 284..2184 1..1901 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:31 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 274..2174 1..1901 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:22 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 284..2184 1..1901 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:43 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11487833..11488601 1..769 100 -> Plus
3L 11494090..11494732 770..1412 100 -> Plus
3L 11494846..11494956 1413..1523 100 -> Plus
3L 11495017..11495394 1524..1901 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:43 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11487833..11488601 1..769 100 -> Plus
3L 11494090..11494732 770..1412 100 -> Plus
3L 11494846..11494956 1413..1523 100 -> Plus
3L 11495017..11495394 1524..1901 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:43 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11487833..11488601 1..769 100 -> Plus
3L 11494090..11494732 770..1412 100 -> Plus
3L 11494846..11494956 1413..1523 100 -> Plus
3L 11495017..11495394 1524..1901 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:24 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11480933..11481701 1..769 100 -> Plus
arm_3L 11487190..11487832 770..1412 100 -> Plus
arm_3L 11487946..11488056 1413..1523 100 -> Plus
arm_3L 11488117..11488494 1524..1901 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:23 Download gff for LD22381.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11487946..11488056 1413..1523 100 -> Plus
3L 11488117..11488494 1524..1901 100   Plus
3L 11480933..11481701 1..769 100 -> Plus
3L 11487190..11487832 770..1412 100 -> Plus

LD22381.pep Sequence

Translation from 702 to 1601

> LD22381.pep
MKMEVLSVQNHIQGKFGVNKIKDWQASTAPLEEEEELTAGVNGNTAAGEG
ILDVDVVDGHPASVLHMRQHQALNTRPSATPPSAGGGGPLAGGGSVGMTT
PKQATSPVAAASFEAPLSGGSAAAYHHAYMTNVLSSTAQQHHPLPASPLQ
STACARFGAADNLDDVSASAVRELSQQLQAQLRDAKRRHLACTEVTLPND
LTQRIAAEIIRMSEREPCGERACTLFIEFESEPNKVKRIAYFKVDPDTVS
IFELYLTLRQDKSGWSSLVPQFIKNLTRSNTINISPDFTLTKKKLYSSE*

LD22381.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25267-PA 305 GF25267-PA 1..305 1..299 1268 85 Plus
Dana\GF25255-PA 274 GF25255-PA 110..248 159..299 455 58.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15507-PA 299 GG15507-PA 1..299 1..299 1562 97.3 Plus
Dere\GG15494-PA 276 GG15494-PA 115..250 162..299 443 60.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16655-PA 273 GH16655-PA 1..273 1..299 877 63.6 Plus
Dgri\GH16643-PA 280 GH16643-PA 121..249 165..299 439 63 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-PC 299 CG7533-PC 1..299 1..299 1533 100 Plus
chrb-PE 233 CG7533-PE 1..233 67..299 1193 100 Plus
scyl-PC 280 CG7590-PC 49..254 92..299 419 45.6 Plus
scyl-PA 280 CG7590-PA 49..254 92..299 419 45.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11614-PA 304 GI11614-PA 1..297 1..297 873 64.1 Plus
Dmoj\GI11599-PA 273 GI11599-PA 110..242 165..299 447 61.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22796-PA 289 GL22796-PA 1..289 1..299 1101 72.4 Plus
Dper\GL22775-PA 260 GL22775-PA 105..237 165..299 437 58.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20420-PA 289 GA20420-PA 1..289 1..299 1101 72.4 Plus
Dpse\GA20462-PA 260 GA20462-PA 105..237 165..299 437 58.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25275-PA 299 GM25275-PA 1..299 1..299 1570 98.3 Plus
Dsec\GM25265-PA 278 GM25265-PA 118..252 163..299 444 61.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14310-PA 299 GD14310-PA 1..299 1..299 1571 98.3 Plus
Dsim\GD14299-PA 481 GD14299-PA 118..211 163..256 292 59.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11294-PA 295 GJ11294-PA 1..288 1..297 842 61.9 Plus
Dvir\GJ11278-PA 284 GJ11278-PA 121..253 165..299 468 63 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17172-PA 323 GK17172-PA 1..323 1..299 947 64.8 Plus
Dwil\GK17162-PA 268 GK17162-PA 104..241 157..299 458 61.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21815-PA 299 GE21815-PA 1..299 1..299 1573 98 Plus
Dyak\GE21804-PA 291 GE21804-PA 131..265 163..299 444 60.6 Plus

LD22381.hyp Sequence

Translation from 702 to 1601

> LD22381.hyp
MKMEVLSVQNHIQGKFGVNKIKDWQASTAPLEEEEELTAGVNGNTAAGEG
ILDVDVVDGHPASVLHMRQHQALNTRPSATPPSAGGGGPLAGGGSVGMTT
PKQATSPVAAASFEAPLSGGSAAAYHHAYMTNVLSSTAQQHHPLPASPLQ
STACARFGAADNLDDVSASAVRELSQQLQAQLRDAKRRHLACTEVTLPND
LTQRIAAEIIRMSEREPCGERACTLFIEFESEPNKVKRIAYFKVDPDTVS
IFELYLTLRQDKSGWSSLVPQFIKNLTRSNTINISPDFTLTKKKLYSSE*

LD22381.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-PC 299 CG7533-PC 1..299 1..299 1533 100 Plus
chrb-PE 233 CG7533-PE 1..233 67..299 1193 100 Plus
scyl-PC 280 CG7590-PC 49..254 92..299 419 45.6 Plus
scyl-PA 280 CG7590-PA 49..254 92..299 419 45.6 Plus