BDGP Sequence Production Resources |
Search the DGRC for LD22396
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 223 |
Well: | 96 |
Vector: | pOT2 |
Associated Gene/Transcript | car-RA |
Protein status: | LD22396.pep: gold |
Preliminary Size: | 2304 |
Sequenced Size: | 2363 |
Gene | Date | Evidence |
---|---|---|
CG12230 | 2001-01-01 | Release 2 assignment |
CG12230 | 2001-11-29 | Blastp of sequenced clone |
CG12230 | 2003-01-01 | Sim4 clustering to Release 3 |
car | 2008-04-29 | Release 5.5 accounting |
car | 2008-08-15 | Release 5.9 accounting |
car | 2008-12-18 | 5.12 accounting |
2363 bp (2363 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069498
> LD22396.complete CCTGATCTTCTGCAGCCGAAATCCGTGGGCGTTGCACCAACACCACCAAC GCACTGCACAAACCGCCCACCAAGGACACGGTAGCGACCGACCGGAAGCC GCAGAGCATACGAATCAACACTTCTGGCAAGAGGAAAGGAGCATGTTCCC CCACTTGAAGGGCCATGGTCAGCGGGTCAACCTGCAGTTGCTGCAGGAGG CCGCCTGCCGCGAGCTGCTGCAGCAGCTGGACCGCATTGAGGGTTCCAAG GTTATTGTGCTGGACGAGACCATGATCGGACCGCTGGACTTGGTTACCCG GCCAAAGTTATTCGCTGATCGAGGCATCCGTCTGCTGGCCCTCAAGCCGG AGCTTCATTTGCCGCGCGAGGTGGCCAATGTGGTGTACGTGATGCGCCCA CGCGTGGCGCTGATGGAGCAGCTGGCCGCCCACGTGAAGGCAGGCGGAAG AGCGGCCGCTGGACGGCAGTACCACATCCTGTTCGCCCCGAGGCGGTCAT GTCTGTGCGTCAGCCAACTGGAGGTCAGCGGCGTGTTGGGCAGCTTCGGA AACATCGAGGAACTGGCCTGGAACTATCTGCCGCTGGATGTCGACCTGGT ATCGATGGAGATGCCCAATGCCTTCCGCGATGTGAGTGTGGACGGTGACA CTAGCTCGCTGTATCAGGCGGCAGTGGGCCTAGTGCAGCTGCAGCGTCTA TACGGTCGCATTCCGAAGATCTACGGAAAAGGAGAGTTTGCGCACAGGGT ATGGGAGCACGCCAAGCAGCTGGGCCGGGATGAGCGGACTCTGTACAACG GCGACAAGGGTGTCGTCGATCAGTTGATCCTTCTGGACAGAAGCATCGAT CTGCTCAGCCCGCTGGCCACACAACTCACCTACGAGGGGCTTATCGATGA GTTCTACGGCATCCGGCAGAACAAACTGACGCTGCCCGCCGAGAACTTTC CCTCTGACGGAGCCCTTCCCGGAGGCGGAGGCAGTGGCCCACGAGTCGAG GAATCGCAGTCGCTGCTGGGTGACACCGAGAAAAAGACCATCCTACTGCA CTCCGGCGAGCAGTTGTACGCGGAGCTGCGGAACAAGCACTTCAACGAGG TCACCAAGCTGCTCGCTCGCAAGGCACGGGAAATTCACGTCCAGATGCAC GCCACCTCCCAGGACAAGAGCGTGCAGGAGATCAAGAGCTTCGTCGAGAA CCTCCTGCCGCAGCTAATGGCCCAGAAGAAGGCCACCTCTGAGCATACGG CCATCGCTGGCCTCCTGCACGAACAGGTGAACGCGGTGCGCTTCGCTGAC GACCTGGCTGCCGAGCAGGAGTTCATGGTCTGCGCAGATATCGACAAGCC AAGCGCCTACATCGAGGACCTGATTGCCTGCAGGGTGGAGTTGAATCGCG TCCTGCGGCTCATCTGCATGCAGTGCCACGCCGCCTCCGGATTCAAGGAG AAGCTGCTTAACCACTACAAGCGCGAACTGGTCCATGTGTACGGTCTGGA AGTGCTGCTCACCATCAGCAACCTGGAGAAATCGGGCCTGCTCCATCTGC AAACAGAGTCGCGGGCTTACAGCGTTCTGCGAAAGACGCTGCACCTCACG GTGGACGACAACGTTGAAATTGAGCCAAAGGACATCAGCTACGTGCACAG CTTCTACGCTCCGCTGACCGCGCGCATTGTGGAGCATTCGCTCAAACCGC TGGGTTGGCAGACGCTTAAGAGCCAAATCAATAACCTGCCCGGACCGACG TTCGAGGACTTTCAGGCGCAGTTGGTGGGCATCGGTGGACGGCATACGGT CACCACAGTCAGCGAGGGATCCCTACTGAATGTGCCGCGAGTGGTGCTCG TCTGCTTTGTGGGCGGATGCACGTTCGCTGAAATAGCTGCGCTGCGTTTC CTCGCCGCCCAGGAGGACAACAACGTGGAGTTCCTGATTGCCACCACGAA GGTGGTCAACAAACACTCCTTCCTGGACAGCCTGATGAGCTCGTGAGGCC GGCGGCTAAGCCGACTGGAAGCCTATCGCCTGTCCAACGCCCACGGCCTG GCACGTGGATGAAACGCGTCCGTTCCGCTGAAGCCGAGATCAAAGAGAAA GGGCAAGCGGCGCAGCGCGGCAATCGGGACTGCAGATGAGAATCCAGGAT GCTAGGGGCGTTGTGAATGACACGATTACTAAGGACTCGCCGGCAAGCGG AAACCATAAAATATTTATTTTTCGAACGCGGCATTTATTATTTATTCTTG TAACCTAAAGAGCATGTATGTATATAGATAGATTCAAGCATAATATGTAT ATTTATGTATACCGAAGTATGTAGTCTTAAGCAGCAAAAAAAAAAAAAAA AAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 19455006..19456590 | 1..1585 | 99 | -> | Plus |
chrX | 19456713..19457460 | 1586..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RA | 1..1854 | 143..1996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RA | 1..1854 | 143..1996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RC | 1..1920 | 143..2062 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RA | 1..1854 | 143..1996 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RC | 1..1920 | 143..2062 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RA | 1..2333 | 1..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RA | 16..2348 | 1..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RA | 18..2350 | 1..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RA | 1..2333 | 1..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
car-RA | 18..2350 | 1..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19566200..19567784 | 1..1585 | 100 | -> | Plus |
X | 19567907..19568654 | 1586..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19566200..19567784 | 1..1585 | 100 | -> | Plus |
X | 19567907..19568654 | 1586..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19566200..19567784 | 1..1585 | 100 | -> | Plus |
X | 19567907..19568654 | 1586..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 19460233..19461817 | 1..1585 | 100 | -> | Plus |
arm_X | 19461940..19462687 | 1586..2335 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19574298..19575882 | 1..1585 | 100 | -> | Plus |
X | 19576005..19576752 | 1586..2335 | 99 | Plus |
Translation from 0 to 1995
> LD22396.hyp LIFCSRNPWALHQHHQRTAQTAHQGHGSDRPEAAEHTNQHFWQEERSMFP HLKGHGQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTR PKLFADRGIRLLALKPELHLPREVANVVYVMRPRVALMEQLAAHVKAGGR AAAGRQYHILFAPRRSCLCVSQLEVSGVLGSFGNIEELAWNYLPLDVDLV SMEMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGKGEFAHRV WEHAKQLGRDERTLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGLIDE FYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQSLLGDTEKKTILLH SGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSFVEN LLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADIDKP SAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLNHYKRELVHVYGLE VLLTISNLEKSGLLHLQTESRAYSVLRKTLHLTVDDNVEIEPKDISYVHS FYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGIGGRHTV TTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIATTK VVNKHSFLDSLMSS*
Translation from 142 to 1995
> LD22396.pep MFPHLKGHGQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDL VTRPKLFADRGIRLLALKPELHLPREVANVVYVMRPRVALMEQLAAHVKA GGRAAAGRQYHILFAPRRSCLCVSQLEVSGVLGSFGNIEELAWNYLPLDV DLVSMEMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGKGEFA HRVWEHAKQLGRDERTLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGL IDEFYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQSLLGDTEKKTI LLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSF VENLLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADI DKPSAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLNHYKRELVHVY GLEVLLTISNLEKSGLLHLQTESRAYSVLRKTLHLTVDDNVEIEPKDISY VHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGIGGR HTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIA TTKVVNKHSFLDSLMSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20198-PA | 621 | GF20198-PA | 1..621 | 1..617 | 2411 | 74.4 | Plus |
Dana\GF16935-PA | 640 | GF16935-PA | 9..362 | 14..368 | 192 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19231-PA | 617 | GG19231-PA | 1..617 | 1..617 | 3191 | 96.9 | Plus |
Dere\GG11405-PA | 641 | GG11405-PA | 9..614 | 14..588 | 188 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12312-PA | 616 | GH12312-PA | 1..615 | 1..616 | 2347 | 71.6 | Plus |
Dgri\GH19374-PA | 641 | GH19374-PA | 22..361 | 29..368 | 202 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
car-PC | 639 | CG12230-PC | 1..617 | 1..617 | 3144 | 100 | Plus |
car-PA | 617 | CG12230-PA | 1..617 | 1..617 | 3144 | 100 | Plus |
car-PB | 617 | CG12230-PB | 1..617 | 1..617 | 3144 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21456-PA | 610 | GI21456-PA | 1..610 | 1..617 | 2350 | 71.7 | Plus |
Dmoj\GI22576-PA | 642 | GI22576-PA | 9..615 | 14..588 | 203 | 22 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14537-PA | 283 | GL14537-PA | 1..283 | 335..617 | 1271 | 82.7 | Plus |
Dper\GL14536-PA | 309 | GL14536-PA | 1..297 | 1..305 | 1156 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11493-PA | 609 | GA11493-PA | 1..609 | 1..617 | 2588 | 77.8 | Plus |
Dpse\GA18679-PA | 644 | GA18679-PA | 9..617 | 14..588 | 207 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22966-PA | 617 | GM22966-PA | 1..617 | 1..617 | 3251 | 98.9 | Plus |
Dsec\GM10243-PA | 640 | GM10243-PA | 9..613 | 14..588 | 201 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17447-PA | 641 | GD17447-PA | 1..611 | 1..611 | 3226 | 99 | Plus |
Dsim\GD21217-PA | 640 | GD21217-PA | 9..613 | 14..588 | 198 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16477-PA | 618 | GJ16477-PA | 1..616 | 1..615 | 2330 | 70.7 | Plus |
Dvir\GJ10298-PA | 641 | GJ10298-PA | 9..614 | 14..588 | 212 | 22.9 | Plus |