Clone LD22396 Report

Search the DGRC for LD22396

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:223
Well:96
Vector:pOT2
Associated Gene/Transcriptcar-RA
Protein status:LD22396.pep: gold
Preliminary Size:2304
Sequenced Size:2363

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12230 2001-01-01 Release 2 assignment
CG12230 2001-11-29 Blastp of sequenced clone
CG12230 2003-01-01 Sim4 clustering to Release 3
car 2008-04-29 Release 5.5 accounting
car 2008-08-15 Release 5.9 accounting
car 2008-12-18 5.12 accounting

Clone Sequence Records

LD22396.complete Sequence

2363 bp (2363 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069498

> LD22396.complete
CCTGATCTTCTGCAGCCGAAATCCGTGGGCGTTGCACCAACACCACCAAC
GCACTGCACAAACCGCCCACCAAGGACACGGTAGCGACCGACCGGAAGCC
GCAGAGCATACGAATCAACACTTCTGGCAAGAGGAAAGGAGCATGTTCCC
CCACTTGAAGGGCCATGGTCAGCGGGTCAACCTGCAGTTGCTGCAGGAGG
CCGCCTGCCGCGAGCTGCTGCAGCAGCTGGACCGCATTGAGGGTTCCAAG
GTTATTGTGCTGGACGAGACCATGATCGGACCGCTGGACTTGGTTACCCG
GCCAAAGTTATTCGCTGATCGAGGCATCCGTCTGCTGGCCCTCAAGCCGG
AGCTTCATTTGCCGCGCGAGGTGGCCAATGTGGTGTACGTGATGCGCCCA
CGCGTGGCGCTGATGGAGCAGCTGGCCGCCCACGTGAAGGCAGGCGGAAG
AGCGGCCGCTGGACGGCAGTACCACATCCTGTTCGCCCCGAGGCGGTCAT
GTCTGTGCGTCAGCCAACTGGAGGTCAGCGGCGTGTTGGGCAGCTTCGGA
AACATCGAGGAACTGGCCTGGAACTATCTGCCGCTGGATGTCGACCTGGT
ATCGATGGAGATGCCCAATGCCTTCCGCGATGTGAGTGTGGACGGTGACA
CTAGCTCGCTGTATCAGGCGGCAGTGGGCCTAGTGCAGCTGCAGCGTCTA
TACGGTCGCATTCCGAAGATCTACGGAAAAGGAGAGTTTGCGCACAGGGT
ATGGGAGCACGCCAAGCAGCTGGGCCGGGATGAGCGGACTCTGTACAACG
GCGACAAGGGTGTCGTCGATCAGTTGATCCTTCTGGACAGAAGCATCGAT
CTGCTCAGCCCGCTGGCCACACAACTCACCTACGAGGGGCTTATCGATGA
GTTCTACGGCATCCGGCAGAACAAACTGACGCTGCCCGCCGAGAACTTTC
CCTCTGACGGAGCCCTTCCCGGAGGCGGAGGCAGTGGCCCACGAGTCGAG
GAATCGCAGTCGCTGCTGGGTGACACCGAGAAAAAGACCATCCTACTGCA
CTCCGGCGAGCAGTTGTACGCGGAGCTGCGGAACAAGCACTTCAACGAGG
TCACCAAGCTGCTCGCTCGCAAGGCACGGGAAATTCACGTCCAGATGCAC
GCCACCTCCCAGGACAAGAGCGTGCAGGAGATCAAGAGCTTCGTCGAGAA
CCTCCTGCCGCAGCTAATGGCCCAGAAGAAGGCCACCTCTGAGCATACGG
CCATCGCTGGCCTCCTGCACGAACAGGTGAACGCGGTGCGCTTCGCTGAC
GACCTGGCTGCCGAGCAGGAGTTCATGGTCTGCGCAGATATCGACAAGCC
AAGCGCCTACATCGAGGACCTGATTGCCTGCAGGGTGGAGTTGAATCGCG
TCCTGCGGCTCATCTGCATGCAGTGCCACGCCGCCTCCGGATTCAAGGAG
AAGCTGCTTAACCACTACAAGCGCGAACTGGTCCATGTGTACGGTCTGGA
AGTGCTGCTCACCATCAGCAACCTGGAGAAATCGGGCCTGCTCCATCTGC
AAACAGAGTCGCGGGCTTACAGCGTTCTGCGAAAGACGCTGCACCTCACG
GTGGACGACAACGTTGAAATTGAGCCAAAGGACATCAGCTACGTGCACAG
CTTCTACGCTCCGCTGACCGCGCGCATTGTGGAGCATTCGCTCAAACCGC
TGGGTTGGCAGACGCTTAAGAGCCAAATCAATAACCTGCCCGGACCGACG
TTCGAGGACTTTCAGGCGCAGTTGGTGGGCATCGGTGGACGGCATACGGT
CACCACAGTCAGCGAGGGATCCCTACTGAATGTGCCGCGAGTGGTGCTCG
TCTGCTTTGTGGGCGGATGCACGTTCGCTGAAATAGCTGCGCTGCGTTTC
CTCGCCGCCCAGGAGGACAACAACGTGGAGTTCCTGATTGCCACCACGAA
GGTGGTCAACAAACACTCCTTCCTGGACAGCCTGATGAGCTCGTGAGGCC
GGCGGCTAAGCCGACTGGAAGCCTATCGCCTGTCCAACGCCCACGGCCTG
GCACGTGGATGAAACGCGTCCGTTCCGCTGAAGCCGAGATCAAAGAGAAA
GGGCAAGCGGCGCAGCGCGGCAATCGGGACTGCAGATGAGAATCCAGGAT
GCTAGGGGCGTTGTGAATGACACGATTACTAAGGACTCGCCGGCAAGCGG
AAACCATAAAATATTTATTTTTCGAACGCGGCATTTATTATTTATTCTTG
TAACCTAAAGAGCATGTATGTATATAGATAGATTCAAGCATAATATGTAT
ATTTATGTATACCGAAGTATGTAGTCTTAAGCAGCAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

LD22396.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
car.a 3389 car.a 132..2483 1..2352 11715 99.8 Plus
car-RA 3211 car-RA 132..2483 1..2352 11715 99.8 Plus
car-RB 3173 car-RB 108..2445 15..2352 11645 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19455006..19456590 1..1585 7910 99.9 Plus
chrX 22417052 chrX 19456711..19457460 1584..2333 3750 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19566200..19567784 1..1585 7925 100 Plus
X 23542271 X 19567905..19568673 1584..2352 3800 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19574298..19575882 1..1585 7925 100 Plus
X 23527363 X 19576003..19576771 1584..2352 3800 99.6 Plus
Blast to na_te.dros performed on 2019-03-16 11:24:27 has no hits.

LD22396.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:25:07 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19455006..19456590 1..1585 99 -> Plus
chrX 19456713..19457460 1586..2335 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:29 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RA 1..1854 143..1996 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:12 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RA 1..1854 143..1996 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:16:12 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RC 1..1920 143..2062 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:30 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RA 1..1854 143..1996 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:07 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RC 1..1920 143..2062 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:23 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RA 1..2333 1..2335 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:11 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RA 16..2348 1..2335 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:16:12 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RA 18..2350 1..2335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:31 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RA 1..2333 1..2335 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:07 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
car-RA 18..2350 1..2335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:07 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
X 19566200..19567784 1..1585 100 -> Plus
X 19567907..19568654 1586..2335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:07 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
X 19566200..19567784 1..1585 100 -> Plus
X 19567907..19568654 1586..2335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:07 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
X 19566200..19567784 1..1585 100 -> Plus
X 19567907..19568654 1586..2335 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:16:12 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19460233..19461817 1..1585 100 -> Plus
arm_X 19461940..19462687 1586..2335 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:56 Download gff for LD22396.complete
Subject Subject Range Query Range Percent Splice Strand
X 19574298..19575882 1..1585 100 -> Plus
X 19576005..19576752 1586..2335 99   Plus

LD22396.hyp Sequence

Translation from 0 to 1995

> LD22396.hyp
LIFCSRNPWALHQHHQRTAQTAHQGHGSDRPEAAEHTNQHFWQEERSMFP
HLKGHGQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTR
PKLFADRGIRLLALKPELHLPREVANVVYVMRPRVALMEQLAAHVKAGGR
AAAGRQYHILFAPRRSCLCVSQLEVSGVLGSFGNIEELAWNYLPLDVDLV
SMEMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGKGEFAHRV
WEHAKQLGRDERTLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGLIDE
FYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQSLLGDTEKKTILLH
SGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSFVEN
LLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADIDKP
SAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLNHYKRELVHVYGLE
VLLTISNLEKSGLLHLQTESRAYSVLRKTLHLTVDDNVEIEPKDISYVHS
FYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGIGGRHTV
TTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIATTK
VVNKHSFLDSLMSS*

LD22396.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
car-PC 639 CG12230-PC 1..617 48..664 3144 100 Plus
car-PA 617 CG12230-PA 1..617 48..664 3144 100 Plus
car-PB 617 CG12230-PB 1..617 48..664 3144 100 Plus

LD22396.pep Sequence

Translation from 142 to 1995

> LD22396.pep
MFPHLKGHGQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDL
VTRPKLFADRGIRLLALKPELHLPREVANVVYVMRPRVALMEQLAAHVKA
GGRAAAGRQYHILFAPRRSCLCVSQLEVSGVLGSFGNIEELAWNYLPLDV
DLVSMEMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGKGEFA
HRVWEHAKQLGRDERTLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGL
IDEFYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQSLLGDTEKKTI
LLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSF
VENLLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADI
DKPSAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLNHYKRELVHVY
GLEVLLTISNLEKSGLLHLQTESRAYSVLRKTLHLTVDDNVEIEPKDISY
VHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGIGGR
HTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIA
TTKVVNKHSFLDSLMSS*

LD22396.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20198-PA 621 GF20198-PA 1..621 1..617 2411 74.4 Plus
Dana\GF16935-PA 640 GF16935-PA 9..362 14..368 192 24.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19231-PA 617 GG19231-PA 1..617 1..617 3191 96.9 Plus
Dere\GG11405-PA 641 GG11405-PA 9..614 14..588 188 23.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12312-PA 616 GH12312-PA 1..615 1..616 2347 71.6 Plus
Dgri\GH19374-PA 641 GH19374-PA 22..361 29..368 202 23.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
car-PC 639 CG12230-PC 1..617 1..617 3144 100 Plus
car-PA 617 CG12230-PA 1..617 1..617 3144 100 Plus
car-PB 617 CG12230-PB 1..617 1..617 3144 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21456-PA 610 GI21456-PA 1..610 1..617 2350 71.7 Plus
Dmoj\GI22576-PA 642 GI22576-PA 9..615 14..588 203 22 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14537-PA 283 GL14537-PA 1..283 335..617 1271 82.7 Plus
Dper\GL14536-PA 309 GL14536-PA 1..297 1..305 1156 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11493-PA 609 GA11493-PA 1..609 1..617 2588 77.8 Plus
Dpse\GA18679-PA 644 GA18679-PA 9..617 14..588 207 22.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22966-PA 617 GM22966-PA 1..617 1..617 3251 98.9 Plus
Dsec\GM10243-PA 640 GM10243-PA 9..613 14..588 201 23.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17447-PA 641 GD17447-PA 1..611 1..611 3226 99 Plus
Dsim\GD21217-PA 640 GD21217-PA 9..613 14..588 198 23.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16477-PA 618 GJ16477-PA 1..616 1..615 2330 70.7 Plus
Dvir\GJ10298-PA 641 GJ10298-PA 9..614 14..588 212 22.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10350-PA 617 GK10350-PA 1..617 1..617 2419 74.2 Plus
Dwil\GK11094-PA 652 GK11094-PA 7..625 14..588 264 24.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15849-PA 617 GE15849-PA 1..617 1..617 3213 97.2 Plus
Dyak\GE23601-PA 640 GE23601-PA 9..613 14..588 200 23.3 Plus